Wall clock time and date at job start Tue Mar 31 2020 16:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47188 * 2 1 4 4 C 1.53006 * 109.46811 * 119.99756 * 2 1 3 5 5 C 1.52999 * 109.46626 * 184.99727 * 4 2 1 6 6 N 1.46506 * 109.46691 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99880 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99750 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00141 * 180.02562 * 7 6 5 10 10 S 1.81003 * 109.47226 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99901 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99973 * 0.02562 * 11 10 9 13 13 C 1.38795 * 119.99962 * 179.97438 * 11 10 9 14 14 N 1.31631 * 119.99837 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00136 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46913 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47129 * 120.00181 * 15 13 11 18 18 H 1.48499 * 109.46713 * 240.00042 * 15 13 11 19 19 N 1.46496 * 109.47217 * 239.99560 * 2 1 3 20 20 C 1.39163 * 120.00063 * 85.00145 * 19 2 1 21 21 C 1.39203 * 120.05609 * 359.97438 * 20 19 2 22 22 N 1.32015 * 119.93039 * 180.02562 * 21 20 19 23 23 C 1.32393 * 120.05219 * 0.02562 * 22 21 20 24 24 F 1.35105 * 119.93953 * 180.02562 * 23 22 21 25 25 C 1.38467 * 120.12681 * 359.97438 * 23 22 21 26 26 N 1.32218 * 120.06869 * 359.72212 * 25 23 22 27 27 H 1.09001 * 109.47273 * 300.00092 * 1 2 3 28 28 H 1.09002 * 109.46911 * 60.00164 * 1 2 3 29 29 H 1.09009 * 109.47170 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46955 * 305.00200 * 4 2 1 31 31 H 1.09000 * 109.47050 * 65.00029 * 4 2 1 32 32 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 33 33 H 1.09000 * 109.47160 * 60.00369 * 5 4 2 34 34 H 0.96999 * 120.00076 * 0.02562 * 6 5 4 35 35 H 1.09004 * 109.47043 * 300.00223 * 9 7 6 36 36 H 1.09004 * 109.47476 * 60.00149 * 9 7 6 37 37 H 0.97010 * 119.99929 * 180.02562 * 14 13 11 38 38 H 0.97001 * 120.00360 * 265.00237 * 19 2 1 39 39 H 1.08001 * 120.03871 * 359.97438 * 21 20 19 40 40 H 1.08002 * 119.96675 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 7 4.0530 -1.3034 2.5103 7 6 5.3739 -1.3396 2.7755 8 8 6.1583 -0.8004 2.0238 9 6 5.8762 -2.0498 4.0060 10 16 7.6801 -1.9221 4.0823 11 6 7.9870 -2.8106 5.5726 12 1 7.1633 -3.2335 6.1286 13 6 9.2874 -2.9680 6.0315 14 7 10.2915 -2.4539 5.3531 15 14 9.6129 -3.9107 7.6111 16 1 8.3252 -4.3845 8.1790 17 1 10.4854 -5.0767 7.3209 18 1 10.2867 -3.0195 8.5893 19 7 2.0183 -0.6907 -1.1961 20 6 2.1513 0.0035 -2.3949 21 6 1.8201 1.3540 -2.4590 22 7 1.9467 2.0099 -3.5976 23 6 2.3877 1.3842 -4.6778 24 9 2.5168 2.0578 -5.8417 25 6 2.7178 0.0408 -4.6166 26 7 2.5986 -0.6194 -3.4773 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6053 -0.2617 2.1370 31 1 1.7515 -1.7715 1.2057 32 1 3.9994 -1.0728 0.4261 33 1 3.8531 0.4370 1.3573 34 1 3.4257 -1.7348 3.1113 35 1 5.4419 -1.5900 4.8937 36 1 5.5876 -3.1001 3.9627 37 1 11.2004 -2.5642 5.6736 38 1 2.2490 -1.6319 -1.1525 39 1 1.4591 1.8645 -1.5783 40 1 3.0777 -0.4670 -5.4992 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098837662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:25 Heat of formation + Delta-G solvation = -58.692196 kcal Electronic energy + Delta-G solvation = -23896.343387 eV Core-core repulsion = 19978.981312 eV Total energy + Delta-G solvation = -3917.362075 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -49.96033 -42.09124 -40.63269 -38.71699 -36.05115 -35.36301 -34.58752 -33.31808 -31.42842 -29.90645 -29.21681 -27.65706 -26.18460 -24.90995 -23.96915 -22.20634 -21.60378 -19.88193 -19.45726 -19.06658 -18.59004 -17.77302 -17.33705 -17.23261 -16.88302 -16.79146 -16.40626 -15.99253 -15.80157 -15.41822 -15.39195 -14.88211 -14.75281 -14.58418 -14.48076 -14.29214 -13.79215 -13.53844 -13.16223 -12.92024 -12.86201 -12.78307 -12.65957 -12.58077 -12.37788 -12.30019 -11.98855 -11.70416 -11.22899 -11.16344 -10.94646 -10.35341 -10.26822 -10.11606 -8.87422 -8.67349 -8.35171 -6.13345 -0.27803 -0.00071 1.27501 1.41481 1.47854 1.58486 1.61852 1.84781 2.25609 2.30112 2.47118 2.53446 2.99198 3.19203 3.31802 3.38660 3.71547 3.73484 3.80250 4.03551 4.06044 4.12518 4.29817 4.35571 4.44190 4.49431 4.51885 4.64498 4.88142 4.92436 4.98374 5.12894 5.24042 5.39243 5.41908 5.45298 5.63965 6.19757 6.22373 6.27071 6.52989 6.74944 7.06341 7.26974 8.74251 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.022394 B = 0.001880 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.056630 B =14888.364771 C =15774.574007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.148 3.852 3 H 0.095 0.905 4 C -0.123 4.123 5 C 0.117 3.883 6 N -0.710 5.710 7 C 0.531 3.469 8 O -0.570 6.570 9 C -0.129 4.129 10 S -0.158 6.158 11 C -0.544 4.544 12 H 0.085 0.915 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.255 1.255 17 H -0.275 1.275 18 H -0.275 1.275 19 N -0.696 5.696 20 C 0.351 3.649 21 C 0.027 3.973 22 N -0.455 5.455 23 C 0.157 3.843 24 F -0.117 7.117 25 C 0.106 3.894 26 N -0.502 5.502 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.419 0.581 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.271 0.729 38 H 0.412 0.588 39 H 0.199 0.801 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.801 3.104 -11.835 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.113 0.887 4 C -0.161 4.161 5 C -0.007 4.007 6 N -0.365 5.365 7 C 0.316 3.684 8 O -0.448 6.448 9 C -0.280 4.280 10 S 0.069 5.931 11 C -0.691 4.691 12 H 0.103 0.897 13 C -0.194 4.194 14 N -0.549 5.549 15 Si 0.822 3.178 16 H -0.178 1.178 17 H -0.200 1.200 18 H -0.200 1.200 19 N -0.328 5.328 20 C 0.110 3.890 21 C -0.143 4.143 22 N -0.173 5.173 23 C 0.001 3.999 24 F -0.097 7.097 25 C -0.056 4.056 26 N -0.224 5.224 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.135 0.865 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.257 0.743 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.249 0.751 39 H 0.216 0.784 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -25.410 4.154 -12.999 28.843 hybrid contribution -0.143 -1.282 1.336 1.857 sum -25.554 2.872 -11.663 28.236 Atomic orbital electron populations 1.22258 0.92933 1.03523 1.03522 1.21249 0.95243 0.97214 0.81976 0.88730 1.22056 0.91593 1.03732 0.98754 1.21430 0.95691 0.96769 0.86781 1.45698 1.05894 1.57301 1.27602 1.20100 0.83114 0.79280 0.85869 1.90706 1.56806 1.46793 1.50526 1.23374 1.00777 1.04437 0.99426 1.85642 1.00044 1.73393 1.34034 1.23237 0.96194 1.39956 1.09751 0.89738 1.26159 0.94746 0.96584 1.01893 1.70200 0.99928 1.44314 1.40441 0.84887 0.78832 0.77558 0.76554 1.17833 1.20040 1.20012 1.44877 1.69373 1.13295 1.05268 1.19592 0.90926 0.90448 0.87998 1.23322 1.04076 0.90880 0.96068 1.67529 1.10593 1.39840 0.99371 1.18955 1.07353 0.90270 0.83330 1.91594 1.93858 1.81058 1.43168 1.23649 0.94894 0.89792 0.97308 1.68103 1.17603 1.37950 0.98778 0.89022 0.92550 0.91527 0.86459 0.88557 0.93226 0.92713 0.74333 0.86998 0.87115 0.92037 0.75088 0.78437 0.77694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.52 9.42 71.98 0.68 0.16 16 2 C 0.15 0.87 2.26 44.99 0.10 0.97 16 3 H 0.09 0.52 6.47 -2.39 -0.02 0.51 16 4 C -0.12 -0.70 4.87 30.60 0.15 -0.55 16 5 C 0.12 1.98 5.56 86.38 0.48 2.46 16 6 N -0.71 -14.78 5.56 -463.06 -2.57 -17.35 16 7 C 0.53 18.43 7.85 87.66 0.69 19.12 16 8 O -0.57 -25.94 15.86 -3.04 -0.05 -25.99 16 9 C -0.13 -4.86 6.16 71.23 0.44 -4.42 16 10 S -0.16 -8.70 20.57 -56.49 -1.16 -9.86 16 11 C -0.54 -30.62 9.50 67.95 0.65 -29.97 16 12 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 13 C 0.01 0.61 5.49 84.86 0.47 1.07 16 14 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16 15 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 16 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 N -0.70 -7.51 4.70 -324.16 -1.52 -9.03 16 20 C 0.35 5.63 7.65 132.95 1.02 6.65 16 21 C 0.03 0.42 10.01 84.90 0.85 1.27 16 22 N -0.45 -9.63 10.50 -195.82 -2.06 -11.69 16 23 C 0.16 3.19 8.43 84.66 0.71 3.91 16 24 F -0.12 -2.47 17.29 44.97 0.78 -1.69 16 25 C 0.11 1.79 11.20 84.69 0.95 2.74 16 26 N -0.50 -9.41 10.53 -192.40 -2.03 -11.44 16 27 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 28 H 0.06 0.29 7.69 -2.39 -0.02 0.27 16 29 H 0.07 0.23 8.14 -2.38 -0.02 0.21 16 30 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 1.05 7.75 -2.39 -0.02 1.04 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.42 5.34 8.47 -92.71 -0.79 4.56 16 35 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 36 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 37 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 38 H 0.41 4.42 8.73 -92.71 -0.81 3.61 16 39 H 0.20 1.90 6.10 -2.91 -0.02 1.88 16 40 H 0.21 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -83.55 363.89 0.38 -83.17 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -0.50 Total: 10.99 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 7.18 Total: 3.38 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -7.89 Total: -105.14 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.05 Total: -25.99 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.78 Total: -1.69 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -83.55 0.38 -83.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098837662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.477 kcal (2) G-P(sol) polarization free energy of solvation -83.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds