Wall clock time and date at job start Tue Mar 31 2020 16:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.52997 * 109.47469 * 184.99697 * 4 2 1 6 6 N 1.46497 * 109.47480 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00234 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99941 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00093 * 180.02562 * 7 6 5 10 10 S 1.80999 * 109.47101 * 180.02562 * 9 7 6 11 11 C 1.76202 * 100.00025 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.38795 * 120.00013 * 180.02562 * 11 10 9 14 14 N 1.31632 * 119.99987 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00138 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47306 * 90.00092 * 15 13 11 17 17 H 1.48502 * 109.47195 * 210.00110 * 15 13 11 18 18 H 1.48506 * 109.46913 * 330.00261 * 15 13 11 19 19 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 20 20 C 1.38577 * 119.99936 * 85.00295 * 19 2 1 21 21 C 1.39466 * 120.51440 * 359.72226 * 20 19 2 22 22 C 1.38471 * 118.31331 * 179.80427 * 21 20 19 23 23 F 1.35094 * 120.43066 * 180.21983 * 22 21 20 24 24 N 1.32783 * 119.13463 * 0.46671 * 22 21 20 25 25 C 1.31759 * 120.96687 * 359.75178 * 24 22 21 26 26 N 1.31764 * 121.86013 * 0.02562 * 25 24 22 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 31 31 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 32 32 H 1.08997 * 109.47151 * 300.00410 * 5 4 2 33 33 H 1.09006 * 109.46918 * 59.99351 * 5 4 2 34 34 H 0.96996 * 119.99359 * 0.02562 * 6 5 4 35 35 H 1.09008 * 109.47134 * 300.00471 * 9 7 6 36 36 H 1.08997 * 109.46916 * 60.00240 * 9 7 6 37 37 H 0.97004 * 120.00021 * 179.97438 * 14 13 11 38 38 H 0.97002 * 120.00410 * 264.99761 * 19 2 1 39 39 H 1.08006 * 120.84020 * 359.97438 * 21 20 19 40 40 H 1.08003 * 119.07532 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 7 4.0531 -1.3035 2.5101 7 6 5.3740 -1.3397 2.7753 8 8 6.1584 -0.8006 2.0237 9 6 5.8764 -2.0501 4.0058 10 16 7.6802 -1.9224 4.0820 11 6 7.9873 -2.8124 5.5715 12 1 7.1636 -3.2351 6.1275 13 6 9.2877 -2.9692 6.0306 14 7 9.5170 -3.6336 7.1436 15 14 10.7123 -2.2374 5.0693 16 1 10.9744 -0.8561 5.5472 17 1 11.9254 -3.0697 5.2716 18 1 10.3697 -2.2047 3.6246 19 7 2.0183 -0.6907 -1.1961 20 6 2.1506 0.0006 -2.3899 21 6 1.8167 1.3525 -2.4661 22 6 1.9705 1.9996 -3.6806 23 9 1.6642 3.3098 -3.8015 24 7 2.4184 1.3143 -4.7260 25 6 2.7203 0.0361 -4.6199 26 7 2.5929 -0.6165 -3.4824 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 3.9994 -1.0729 0.4260 33 1 3.8533 0.4369 1.3572 34 1 3.4258 -1.7350 3.1110 35 1 5.4420 -1.5904 4.8936 36 1 5.5877 -3.1003 3.9623 37 1 10.4259 -3.7436 7.4643 38 1 2.2490 -1.6319 -1.1526 39 1 1.4500 1.8820 -1.5991 40 1 3.0817 -0.4918 -5.4901 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098839008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:12 Heat of formation + Delta-G solvation = -33.715156 kcal Electronic energy + Delta-G solvation = -24037.633523 eV Core-core repulsion = 20121.354534 eV Total energy + Delta-G solvation = -3916.278989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.53271 -41.32209 -39.48680 -38.26609 -35.23645 -33.81986 -32.47467 -32.43059 -30.66831 -30.14923 -28.37552 -25.65287 -25.11422 -24.27102 -23.32028 -21.65707 -20.51987 -19.24551 -18.59411 -17.90643 -16.80758 -16.65369 -16.51206 -16.20456 -16.03921 -15.81428 -15.50382 -15.06165 -14.98215 -14.77177 -14.23877 -14.05519 -13.99442 -13.88201 -13.55544 -13.27717 -12.82471 -12.62164 -12.37104 -12.12303 -11.81733 -11.61079 -11.47099 -11.29170 -11.13333 -11.03278 -10.64337 -10.24806 -9.88848 -9.87968 -9.61179 -9.11914 -9.02314 -8.79514 -8.53909 -6.95664 -6.31894 -4.04078 0.44107 0.78627 2.32667 2.69792 2.89883 2.99137 3.22543 3.31244 3.32107 3.48419 3.57909 3.77283 4.08881 4.18240 4.23742 4.30586 4.41960 4.62229 4.67754 4.73438 4.79543 4.84122 5.07165 5.07337 5.09864 5.12093 5.22915 5.27698 5.50850 5.57912 5.71037 5.71660 5.80448 5.95356 6.11385 6.40277 6.58780 6.93768 7.49983 7.68099 7.91090 8.38210 8.40731 9.14251 10.77238 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.020139 B = 0.002030 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.985451 B =13787.800616 C =14567.051118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.148 3.852 3 H 0.091 0.909 4 C -0.140 4.140 5 C 0.120 3.880 6 N -0.738 5.738 7 C 0.530 3.470 8 O -0.518 6.518 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.697 5.697 20 C 0.467 3.533 21 C -0.320 4.320 22 C 0.384 3.616 23 F -0.102 7.102 24 N -0.594 5.594 25 C 0.378 3.622 26 N -0.582 5.582 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.400 0.600 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.271 0.729 38 H 0.413 0.587 39 H 0.154 0.846 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.999 7.354 -17.557 29.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.043 3.957 3 H 0.109 0.891 4 C -0.178 4.178 5 C -0.004 4.004 6 N -0.393 5.393 7 C 0.316 3.684 8 O -0.392 6.392 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.516 5.516 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.329 5.329 20 C 0.222 3.778 21 C -0.350 4.350 22 C 0.226 3.774 23 F -0.081 7.081 24 N -0.320 5.320 25 C 0.089 3.911 26 N -0.307 5.307 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.251 0.749 39 H 0.172 0.828 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -21.323 7.897 -19.238 29.785 hybrid contribution -0.752 -0.282 1.727 1.904 sum -22.074 7.616 -17.511 29.187 Atomic orbital electron populations 1.22293 0.94333 1.03220 1.02983 1.21103 0.94384 0.97323 0.82909 0.89088 1.22118 0.95589 1.02342 0.97728 1.21270 0.92497 0.98046 0.88634 1.45936 1.07781 1.58577 1.27036 1.20309 0.81594 0.79737 0.86792 1.90714 1.54970 1.44443 1.49064 1.23278 1.03143 1.03254 0.97809 1.84823 0.98025 1.73840 1.34879 1.22305 0.97296 1.39590 1.07752 0.89374 1.24717 0.98321 0.93883 0.94414 1.69938 1.21749 1.39407 1.20528 0.86734 0.82157 0.79900 0.83054 1.19199 1.19902 1.15928 1.44735 1.68945 1.13406 1.05780 1.18261 0.85545 0.87312 0.86652 1.21816 1.17134 0.96020 1.00025 1.18008 0.90382 0.79400 0.89602 1.91662 1.89176 1.30901 1.96398 1.67858 1.20681 1.10995 1.32453 1.24565 0.87579 0.84933 0.94039 1.68039 1.22802 1.40332 0.99576 0.91931 0.91662 0.90756 0.88864 0.90074 0.91432 0.91513 0.76622 0.88472 0.88435 0.91912 0.74900 0.82825 0.77580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 9.44 37.16 0.35 -0.22 16 2 C 0.15 0.65 2.27 -67.93 -0.15 0.50 16 3 H 0.09 0.41 6.52 -51.93 -0.34 0.07 16 4 C -0.14 -0.62 4.87 -26.73 -0.13 -0.75 16 5 C 0.12 1.08 5.56 -4.04 -0.02 1.05 16 6 N -0.74 -8.13 5.56 -60.30 -0.33 -8.46 16 7 C 0.53 8.93 7.85 -10.99 -0.09 8.84 16 8 O -0.52 -10.93 15.86 5.56 0.09 -10.85 16 9 C -0.12 -2.31 6.16 36.01 0.22 -2.08 16 10 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 11 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 12 H 0.09 2.61 8.03 -52.49 -0.42 2.18 16 13 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 14 N -0.88 -26.33 13.97 55.49 0.78 -25.56 16 15 Si 0.86 21.67 27.74 -169.99 -4.71 16.96 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 19 N -0.70 -4.29 4.68 -53.80 -0.25 -4.54 16 20 C 0.47 3.88 7.69 -154.76 -1.19 2.70 16 21 C -0.32 -2.55 8.90 -39.04 -0.35 -2.90 16 22 C 0.38 3.72 8.50 -17.05 -0.14 3.57 16 23 F -0.10 -1.00 17.30 2.25 0.04 -0.96 16 24 N -0.59 -6.03 10.45 -14.98 -0.16 -6.19 16 25 C 0.38 3.19 12.28 -92.21 -1.13 2.05 16 26 N -0.58 -5.40 10.47 -13.84 -0.14 -5.54 16 27 H 0.06 0.26 7.72 -51.93 -0.40 -0.14 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.31 8.14 -51.92 -0.42 -0.11 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.72 7.75 -51.93 -0.40 0.31 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.40 3.13 8.47 -40.82 -0.35 2.79 16 35 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 36 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 37 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.41 2.45 8.73 -40.82 -0.36 2.10 16 39 H 0.15 0.89 6.27 -52.48 -0.33 0.56 16 40 H 0.21 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -35.96 361.43 -8.80 -44.76 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.13 Total: -0.40 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -2.42 Total: 0.87 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.11 Total: -50.29 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.96 -8.80 -44.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098839008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.049 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds