Wall clock time and date at job start Tue Mar 31 2020 16:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.52997 * 109.47469 * 184.99697 * 4 2 1 6 6 N 1.46497 * 109.47480 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00234 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99941 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00093 * 180.02562 * 7 6 5 10 10 S 1.80999 * 109.47101 * 180.02562 * 9 7 6 11 11 C 1.76202 * 100.00025 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.38795 * 120.00013 * 180.02562 * 11 10 9 14 14 N 1.31632 * 119.99987 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00138 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47306 * 90.00092 * 15 13 11 17 17 H 1.48502 * 109.47195 * 210.00110 * 15 13 11 18 18 H 1.48506 * 109.46913 * 330.00261 * 15 13 11 19 19 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 20 20 C 1.38577 * 119.99936 * 85.00295 * 19 2 1 21 21 C 1.39466 * 120.51440 * 359.72226 * 20 19 2 22 22 C 1.38471 * 118.31331 * 179.80427 * 21 20 19 23 23 F 1.35094 * 120.43066 * 180.21983 * 22 21 20 24 24 N 1.32783 * 119.13463 * 0.46671 * 22 21 20 25 25 C 1.31759 * 120.96687 * 359.75178 * 24 22 21 26 26 N 1.31764 * 121.86013 * 0.02562 * 25 24 22 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 31 31 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 32 32 H 1.08997 * 109.47151 * 300.00410 * 5 4 2 33 33 H 1.09006 * 109.46918 * 59.99351 * 5 4 2 34 34 H 0.96996 * 119.99359 * 0.02562 * 6 5 4 35 35 H 1.09008 * 109.47134 * 300.00471 * 9 7 6 36 36 H 1.08997 * 109.46916 * 60.00240 * 9 7 6 37 37 H 0.97004 * 120.00021 * 179.97438 * 14 13 11 38 38 H 0.97002 * 120.00410 * 264.99761 * 19 2 1 39 39 H 1.08006 * 120.84020 * 359.97438 * 21 20 19 40 40 H 1.08003 * 119.07532 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 7 4.0531 -1.3035 2.5101 7 6 5.3740 -1.3397 2.7753 8 8 6.1584 -0.8006 2.0237 9 6 5.8764 -2.0501 4.0058 10 16 7.6802 -1.9224 4.0820 11 6 7.9873 -2.8124 5.5715 12 1 7.1636 -3.2351 6.1275 13 6 9.2877 -2.9692 6.0306 14 7 9.5170 -3.6336 7.1436 15 14 10.7123 -2.2374 5.0693 16 1 10.9744 -0.8561 5.5472 17 1 11.9254 -3.0697 5.2716 18 1 10.3697 -2.2047 3.6246 19 7 2.0183 -0.6907 -1.1961 20 6 2.1506 0.0006 -2.3899 21 6 1.8167 1.3525 -2.4661 22 6 1.9705 1.9996 -3.6806 23 9 1.6642 3.3098 -3.8015 24 7 2.4184 1.3143 -4.7260 25 6 2.7203 0.0361 -4.6199 26 7 2.5929 -0.6165 -3.4824 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 3.9994 -1.0729 0.4260 33 1 3.8533 0.4369 1.3572 34 1 3.4258 -1.7350 3.1110 35 1 5.4420 -1.5904 4.8936 36 1 5.5877 -3.1003 3.9623 37 1 10.4259 -3.7436 7.4643 38 1 2.2490 -1.6319 -1.1526 39 1 1.4500 1.8820 -1.5991 40 1 3.0817 -0.4918 -5.4901 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098839008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:11 Heat of formation + Delta-G solvation = -59.340506 kcal Electronic energy + Delta-G solvation = -24038.744722 eV Core-core repulsion = 20121.354534 eV Total energy + Delta-G solvation = -3917.390188 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.23924 -41.93294 -40.68907 -38.87004 -36.15942 -34.68016 -34.54327 -33.11056 -31.65179 -30.82926 -29.25628 -27.84809 -25.70559 -24.92876 -23.98645 -22.22821 -21.64576 -19.96939 -19.78301 -19.21190 -17.85108 -17.44038 -17.32663 -17.28521 -17.03719 -16.74332 -16.60817 -16.35072 -15.74297 -15.64466 -15.42986 -14.99730 -14.95716 -14.80890 -14.71546 -14.32353 -13.96815 -13.63730 -13.35318 -13.02796 -12.96013 -12.74161 -12.61413 -12.41298 -12.15396 -11.99328 -11.86588 -11.69615 -11.17885 -11.02446 -10.88178 -10.55020 -10.53573 -10.15853 -9.33534 -9.00367 -8.52233 -6.22904 -0.19600 0.14590 0.98998 1.30468 1.46294 1.55519 1.55886 1.82875 2.21066 2.25513 2.35617 2.68603 2.71475 2.86061 3.21033 3.56658 3.69580 3.74144 3.92705 3.97948 4.05818 4.14964 4.24123 4.36508 4.43228 4.47416 4.57115 4.61412 4.83289 4.88063 4.95303 5.09579 5.26449 5.34822 5.40701 5.55075 5.70242 6.01847 6.11006 6.41638 6.47475 6.93251 7.06578 7.20352 8.59952 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.020139 B = 0.002030 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.985451 B =13787.800616 C =14567.051118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 H 0.093 0.907 4 C -0.125 4.125 5 C 0.118 3.882 6 N -0.710 5.710 7 C 0.532 3.468 8 O -0.567 6.567 9 C -0.111 4.111 10 S -0.182 6.182 11 C -0.527 4.527 12 H 0.064 0.936 13 C 0.045 3.955 14 N -0.916 5.916 15 Si 0.913 3.087 16 H -0.263 1.263 17 H -0.260 1.260 18 H -0.238 1.238 19 N -0.690 5.690 20 C 0.457 3.543 21 C -0.314 4.314 22 C 0.365 3.635 23 F -0.108 7.108 24 N -0.618 5.618 25 C 0.374 3.626 26 N -0.600 5.600 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.420 0.580 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.277 0.723 38 H 0.415 0.585 39 H 0.174 0.826 40 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.731 7.493 -17.745 31.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.111 0.889 4 C -0.163 4.163 5 C -0.006 4.006 6 N -0.364 5.364 7 C 0.318 3.682 8 O -0.445 6.445 9 C -0.262 4.262 10 S 0.045 5.955 11 C -0.674 4.674 12 H 0.082 0.918 13 C -0.160 4.160 14 N -0.554 5.554 15 Si 0.736 3.264 16 H -0.188 1.188 17 H -0.184 1.184 18 H -0.162 1.162 19 N -0.321 5.321 20 C 0.212 3.788 21 C -0.344 4.344 22 C 0.207 3.793 23 F -0.087 7.087 24 N -0.345 5.345 25 C 0.085 3.915 26 N -0.325 5.325 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.257 0.743 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.253 0.747 39 H 0.191 0.809 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -23.126 8.020 -19.395 31.229 hybrid contribution -0.393 -0.359 1.803 1.880 sum -23.518 7.661 -17.592 30.352 Atomic orbital electron populations 1.22239 0.92983 1.03524 1.03441 1.21242 0.95244 0.97226 0.82027 0.88940 1.22065 0.91831 1.03753 0.98632 1.21424 0.95527 0.96825 0.86794 1.45682 1.05928 1.57183 1.27605 1.19992 0.83195 0.79320 0.85717 1.90704 1.56647 1.46766 1.50395 1.23275 0.97965 1.05047 0.99880 1.84783 1.04584 1.73289 1.32874 1.22450 0.96792 1.39395 1.08805 0.91759 1.25555 1.00821 0.94350 0.95315 1.70013 1.22720 1.40726 1.21939 0.85879 0.79600 0.79443 0.81525 1.18758 1.18393 1.16190 1.44888 1.68191 1.13473 1.05579 1.18494 0.85491 0.87660 0.87138 1.21948 1.16499 0.95917 1.00014 1.18260 0.91229 0.79406 0.90356 1.91639 1.89346 1.31280 1.96484 1.67867 1.21687 1.11818 1.33102 1.25147 0.86951 0.84585 0.94774 1.68098 1.23522 1.40775 1.00141 0.92679 0.91435 0.89116 0.86538 0.88457 0.92971 0.92597 0.74283 0.86636 0.86684 0.91381 0.74731 0.80869 0.74884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 9.44 71.98 0.68 0.11 16 2 C 0.15 0.86 2.27 44.99 0.10 0.96 16 3 H 0.09 0.56 6.52 -2.39 -0.02 0.55 16 4 C -0.12 -0.64 4.87 30.59 0.15 -0.49 16 5 C 0.12 1.82 5.56 86.38 0.48 2.30 16 6 N -0.71 -13.52 5.56 -463.07 -2.57 -16.09 16 7 C 0.53 16.99 7.85 87.66 0.69 17.68 16 8 O -0.57 -23.56 15.86 -3.03 -0.05 -23.61 16 9 C -0.11 -3.93 6.16 71.24 0.44 -3.49 16 10 S -0.18 -9.04 18.55 -56.49 -1.05 -10.08 16 11 C -0.53 -30.20 10.04 67.95 0.68 -29.52 16 12 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 13 C 0.05 2.62 5.50 84.86 0.47 3.09 16 14 N -0.92 -55.26 13.97 21.65 0.30 -54.95 16 15 Si 0.91 44.81 27.74 68.60 1.90 46.71 16 16 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 19 N -0.69 -7.13 4.68 -324.13 -1.52 -8.65 16 20 C 0.46 7.09 7.69 133.10 1.02 8.12 16 21 C -0.31 -4.69 8.90 22.62 0.20 -4.49 16 22 C 0.36 6.99 8.50 84.60 0.72 7.71 16 23 F -0.11 -2.12 17.30 44.97 0.78 -1.34 16 24 N -0.62 -12.52 10.45 -201.32 -2.10 -14.62 16 25 C 0.37 6.13 12.28 180.90 2.22 8.35 16 26 N -0.60 -10.67 10.47 -197.69 -2.07 -12.74 16 27 H 0.05 0.32 7.72 -2.39 -0.02 0.30 16 28 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 31 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.05 1.01 7.75 -2.39 -0.02 1.00 16 33 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.42 4.85 8.47 -92.71 -0.79 4.06 16 35 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 36 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 37 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.41 4.10 8.73 -92.71 -0.81 3.29 16 39 H 0.17 1.71 6.27 -2.91 -0.02 1.70 16 40 H 0.24 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -79.68 361.43 0.94 -78.74 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -0.53 Total: 6.32 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 7.85 Total: 10.32 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -7.96 Total: -107.06 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.05 Total: -23.61 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.78 Total: -1.34 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.71 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.05 Total: -10.08 kcal Total: -79.68 0.94 -78.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098839008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.399 kcal (2) G-P(sol) polarization free energy of solvation -79.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds