Wall clock time and date at job start Tue Mar 31 2020 16:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46709 * 2 1 4 4 C 1.53001 * 109.46844 * 119.99997 * 2 1 3 5 5 C 1.53000 * 109.46690 * 184.99996 * 4 2 1 6 6 N 1.46505 * 109.46869 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99807 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00049 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99624 * 179.97438 * 7 6 5 10 10 S 1.81004 * 109.46944 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00059 * 180.02562 * 10 9 7 12 12 H 1.08007 * 120.00114 * 359.97438 * 11 10 9 13 13 C 1.38799 * 120.00076 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00008 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47372 * 89.99817 * 15 13 11 17 17 H 1.48503 * 109.46778 * 209.99650 * 15 13 11 18 18 H 1.48501 * 109.47379 * 329.99370 * 15 13 11 19 19 N 1.46496 * 109.47259 * 240.00388 * 2 1 3 20 20 C 1.39119 * 120.00250 * 84.99654 * 19 2 1 21 21 N 1.32557 * 120.10710 * 0.02701 * 20 19 2 22 22 C 1.32313 * 119.94358 * 179.97438 * 21 20 19 23 23 C 1.38064 * 120.16452 * 359.97438 * 22 21 20 24 24 N 1.32354 * 120.21924 * 0.02562 * 23 22 21 25 25 C 1.32066 * 120.05744 * 0.02562 * 24 23 22 26 26 F 1.35096 * 120.08422 * 180.02562 * 25 24 23 27 27 H 1.09008 * 109.47013 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47558 * 299.99954 * 1 2 3 29 29 H 1.09004 * 109.46864 * 60.00089 * 1 2 3 30 30 H 1.08999 * 109.47319 * 305.00145 * 4 2 1 31 31 H 1.09002 * 109.47077 * 65.00401 * 4 2 1 32 32 H 1.08999 * 109.47362 * 300.00123 * 5 4 2 33 33 H 1.09002 * 109.47030 * 60.00376 * 5 4 2 34 34 H 0.96999 * 119.99905 * 0.02562 * 6 5 4 35 35 H 1.08999 * 109.47479 * 300.00499 * 9 7 6 36 36 H 1.09002 * 109.46920 * 60.00756 * 9 7 6 37 37 H 0.97002 * 120.00352 * 180.02562 * 14 13 11 38 38 H 0.97006 * 119.99854 * 264.99791 * 19 2 1 39 39 H 1.07991 * 119.91942 * 179.97438 * 22 21 20 40 40 H 1.07995 * 119.88791 * 180.28255 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 7 4.0531 -1.3034 2.5102 7 6 5.3740 -1.3395 2.7754 8 8 6.1584 -0.8003 2.0238 9 6 5.8762 -2.0489 4.0065 10 16 7.6801 -1.9213 4.0827 11 6 7.9870 -2.8100 5.5729 12 1 7.1632 -3.2321 6.1294 13 6 9.2874 -2.9666 6.0322 14 7 10.2914 -2.4517 5.3544 15 14 9.6127 -3.9081 7.6124 16 1 9.8142 -5.3457 7.2996 17 1 10.8311 -3.3687 8.2681 18 1 8.4515 -3.7583 8.5259 19 7 2.0184 -0.6905 -1.1962 20 6 2.1512 0.0035 -2.3945 21 7 1.8370 1.2898 -2.4563 22 6 1.9651 1.9469 -3.5976 23 6 2.4258 1.2962 -4.7248 24 7 2.7414 0.0120 -4.6704 25 6 2.6160 -0.6525 -3.5361 26 9 2.9384 -1.9632 -3.4798 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6053 -0.2618 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 3.9994 -1.0728 0.4260 33 1 3.8531 0.4370 1.3574 34 1 3.4257 -1.7349 3.1111 35 1 5.4419 -1.5883 4.8939 36 1 5.5874 -3.0991 3.9639 37 1 11.2002 -2.5615 5.6751 38 1 2.2491 -1.6317 -1.1526 39 1 1.7086 2.9947 -3.6476 40 1 2.5329 1.8380 -5.6529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098842653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:37 Heat of formation + Delta-G solvation = -32.257237 kcal Electronic energy + Delta-G solvation = -24210.596182 eV Core-core repulsion = 20294.380413 eV Total energy + Delta-G solvation = -3916.215769 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.31857 -41.31425 -39.30864 -38.02048 -35.15673 -34.14314 -32.70992 -32.43695 -30.29611 -29.44356 -28.17673 -25.50688 -25.14070 -24.30175 -23.23914 -21.43035 -20.34821 -18.88277 -18.35598 -18.10511 -17.83830 -16.72817 -16.33315 -16.08369 -15.86080 -15.57648 -15.19350 -14.81301 -14.52110 -14.37744 -14.18387 -14.01068 -13.87100 -13.58845 -13.39818 -13.10797 -12.60327 -12.41963 -12.19576 -12.09916 -12.00574 -11.61472 -11.53848 -11.27949 -11.07158 -11.03372 -10.77197 -10.57083 -9.82732 -9.65381 -9.43297 -9.08153 -8.93850 -8.27641 -8.24660 -6.51240 -6.22446 -3.93273 0.38167 0.73440 2.43329 2.99912 3.07411 3.10286 3.21670 3.22774 3.26943 3.30765 3.66113 3.77320 3.85536 4.19477 4.38701 4.46848 4.59859 4.70852 4.76107 5.00684 5.02634 5.07550 5.12654 5.18958 5.25462 5.32346 5.48217 5.60542 5.63894 5.76570 5.84671 5.87827 5.90004 6.11672 6.45477 6.52468 6.56591 6.99791 7.40444 7.58495 7.66464 8.34232 8.58581 9.22725 10.84988 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.022117 B = 0.002020 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.674726 B =13860.059777 C =14475.990479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.156 3.844 3 H 0.097 0.903 4 C -0.141 4.141 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.531 3.469 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.703 5.703 20 C 0.357 3.643 21 N -0.478 5.478 22 C 0.097 3.903 23 C 0.009 3.991 24 N -0.431 5.431 25 C 0.197 3.803 26 F -0.107 7.107 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.415 0.585 39 H 0.178 0.822 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.437 6.886 -15.012 29.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.051 3.949 3 H 0.115 0.885 4 C -0.180 4.180 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.317 3.683 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.746 3.254 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.336 5.336 20 C 0.114 3.886 21 N -0.202 5.202 22 C -0.063 4.063 23 C -0.151 4.151 24 N -0.150 5.150 25 C 0.031 3.969 26 F -0.087 7.087 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.253 0.747 39 H 0.195 0.805 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -22.973 7.886 -16.105 29.143 hybrid contribution -0.793 -2.074 2.072 3.037 sum -23.766 5.812 -14.033 28.205 Atomic orbital electron populations 1.22182 0.94801 1.02266 1.02743 1.20943 0.94062 0.97616 0.82318 0.88519 1.22151 0.95540 1.02077 0.98195 1.21248 0.92543 0.97997 0.88512 1.45997 1.07851 1.58665 1.27023 1.20334 0.81464 0.79708 0.86837 1.90712 1.54942 1.44326 1.49067 1.23528 1.06893 1.02543 0.97413 1.85425 0.92150 1.72706 1.33155 1.22863 0.95473 1.40224 1.09819 0.90921 1.25001 0.95055 0.95645 0.97941 1.70018 0.99382 1.42511 1.38352 0.86159 0.77964 0.79619 0.81698 1.20262 1.20744 1.19701 1.44784 1.70054 1.12661 1.06111 1.19072 0.92835 0.89953 0.86751 1.68104 1.19401 1.04817 1.27828 1.23555 0.93910 1.01230 0.87633 1.23197 1.01833 0.89119 1.00908 1.67601 1.12434 1.09911 1.25074 1.18428 1.06070 0.81394 0.90960 1.91628 1.90515 1.30263 1.96253 0.92448 0.91258 0.91965 0.89140 0.90479 0.91719 0.91549 0.76829 0.89206 0.89228 0.92166 0.74693 0.80501 0.80730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.50 37.16 0.35 -0.56 16 2 C 0.16 1.05 2.60 -67.93 -0.18 0.88 16 3 H 0.10 0.77 7.56 -51.93 -0.39 0.38 16 4 C -0.14 -0.91 4.87 -26.73 -0.13 -1.04 16 5 C 0.12 1.31 5.56 -4.04 -0.02 1.29 16 6 N -0.74 -9.34 5.56 -60.29 -0.33 -9.67 16 7 C 0.53 9.83 7.85 -10.99 -0.09 9.75 16 8 O -0.52 -11.87 15.86 5.56 0.09 -11.78 16 9 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 10 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 11 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 12 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 15 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 N -0.70 -5.56 4.68 -53.73 -0.25 -5.81 16 20 C 0.36 3.41 7.48 -154.59 -1.16 2.25 16 21 N -0.48 -4.22 9.38 -12.17 -0.11 -4.33 16 22 C 0.10 0.62 11.21 -17.41 -0.20 0.42 16 23 C 0.01 0.07 11.21 -17.39 -0.19 -0.13 16 24 N -0.43 -4.60 10.50 -13.24 -0.14 -4.73 16 25 C 0.20 2.14 8.47 -16.93 -0.14 2.00 16 26 F -0.11 -1.22 16.68 2.25 0.04 -1.18 16 27 H 0.06 0.31 8.14 -51.92 -0.42 -0.12 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.80 7.75 -51.93 -0.40 0.39 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.40 3.71 8.47 -40.82 -0.35 3.36 16 35 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 36 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 37 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 38 H 0.42 3.00 8.09 -40.82 -0.33 2.67 16 39 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -36.93 366.44 -8.27 -45.20 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.24 Total: 0.77 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.33 Total: -0.97 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.11 Total: -50.07 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.93 -8.27 -45.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098842653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.939 kcal (2) G-P(sol) polarization free energy of solvation -36.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds