Wall clock time and date at job start Tue Mar 31 2020 16:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46709 * 2 1 4 4 C 1.53001 * 109.46844 * 119.99997 * 2 1 3 5 5 C 1.53000 * 109.46690 * 184.99996 * 4 2 1 6 6 N 1.46505 * 109.46869 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99807 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00049 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99624 * 179.97438 * 7 6 5 10 10 S 1.81004 * 109.46944 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00059 * 180.02562 * 10 9 7 12 12 H 1.08007 * 120.00114 * 359.97438 * 11 10 9 13 13 C 1.38799 * 120.00076 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00008 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47372 * 89.99817 * 15 13 11 17 17 H 1.48503 * 109.46778 * 209.99650 * 15 13 11 18 18 H 1.48501 * 109.47379 * 329.99370 * 15 13 11 19 19 N 1.46496 * 109.47259 * 240.00388 * 2 1 3 20 20 C 1.39119 * 120.00250 * 84.99654 * 19 2 1 21 21 N 1.32557 * 120.10710 * 0.02701 * 20 19 2 22 22 C 1.32313 * 119.94358 * 179.97438 * 21 20 19 23 23 C 1.38064 * 120.16452 * 359.97438 * 22 21 20 24 24 N 1.32354 * 120.21924 * 0.02562 * 23 22 21 25 25 C 1.32066 * 120.05744 * 0.02562 * 24 23 22 26 26 F 1.35096 * 120.08422 * 180.02562 * 25 24 23 27 27 H 1.09008 * 109.47013 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47558 * 299.99954 * 1 2 3 29 29 H 1.09004 * 109.46864 * 60.00089 * 1 2 3 30 30 H 1.08999 * 109.47319 * 305.00145 * 4 2 1 31 31 H 1.09002 * 109.47077 * 65.00401 * 4 2 1 32 32 H 1.08999 * 109.47362 * 300.00123 * 5 4 2 33 33 H 1.09002 * 109.47030 * 60.00376 * 5 4 2 34 34 H 0.96999 * 119.99905 * 0.02562 * 6 5 4 35 35 H 1.08999 * 109.47479 * 300.00499 * 9 7 6 36 36 H 1.09002 * 109.46920 * 60.00756 * 9 7 6 37 37 H 0.97002 * 120.00352 * 180.02562 * 14 13 11 38 38 H 0.97006 * 119.99854 * 264.99791 * 19 2 1 39 39 H 1.07991 * 119.91942 * 179.97438 * 22 21 20 40 40 H 1.07995 * 119.88791 * 180.28255 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 7 4.0531 -1.3034 2.5102 7 6 5.3740 -1.3395 2.7754 8 8 6.1584 -0.8003 2.0238 9 6 5.8762 -2.0489 4.0065 10 16 7.6801 -1.9213 4.0827 11 6 7.9870 -2.8100 5.5729 12 1 7.1632 -3.2321 6.1294 13 6 9.2874 -2.9666 6.0322 14 7 10.2914 -2.4517 5.3544 15 14 9.6127 -3.9081 7.6124 16 1 9.8142 -5.3457 7.2996 17 1 10.8311 -3.3687 8.2681 18 1 8.4515 -3.7583 8.5259 19 7 2.0184 -0.6905 -1.1962 20 6 2.1512 0.0035 -2.3945 21 7 1.8370 1.2898 -2.4563 22 6 1.9651 1.9469 -3.5976 23 6 2.4258 1.2962 -4.7248 24 7 2.7414 0.0120 -4.6704 25 6 2.6160 -0.6525 -3.5361 26 9 2.9384 -1.9632 -3.4798 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6053 -0.2618 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 3.9994 -1.0728 0.4260 33 1 3.8531 0.4370 1.3574 34 1 3.4257 -1.7349 3.1111 35 1 5.4419 -1.5883 4.8939 36 1 5.5874 -3.0991 3.9639 37 1 11.2002 -2.5615 5.6751 38 1 2.2491 -1.6317 -1.1526 39 1 1.7086 2.9947 -3.6476 40 1 2.5329 1.8380 -5.6529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098842653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:33 Heat of formation + Delta-G solvation = -60.195882 kcal Electronic energy + Delta-G solvation = -24211.807693 eV Core-core repulsion = 20294.380413 eV Total energy + Delta-G solvation = -3917.427279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -50.08338 -41.93691 -40.66321 -38.74579 -36.15783 -34.94225 -34.59229 -33.44941 -31.52595 -30.07506 -29.21616 -27.66145 -25.78634 -24.96850 -24.05011 -22.17900 -21.58664 -19.90075 -19.47593 -19.05958 -18.72184 -17.79319 -17.47390 -17.25304 -16.88586 -16.83656 -16.32252 -16.04721 -15.81889 -15.22577 -15.14749 -14.98077 -14.82649 -14.53858 -14.49493 -14.15570 -13.90663 -13.57080 -13.17509 -12.94910 -12.89833 -12.77078 -12.67171 -12.62659 -12.41429 -12.29128 -11.87048 -11.73034 -11.20451 -11.15073 -10.96295 -10.28664 -10.28294 -10.15607 -8.88768 -8.68382 -8.35386 -6.13959 -0.24642 0.10112 1.26296 1.42284 1.46783 1.57078 1.59151 1.83959 2.24450 2.28205 2.46437 2.61460 2.98797 3.24157 3.25938 3.31083 3.73044 3.80865 4.01126 4.05212 4.09077 4.29527 4.29896 4.45453 4.49509 4.50153 4.53659 4.60072 4.85599 4.90660 4.98391 5.08526 5.28138 5.36395 5.40807 5.41544 5.88861 5.92154 6.19095 6.38597 6.50143 6.79451 7.05773 7.23890 8.73904 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.022117 B = 0.002020 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.674726 B =13860.059777 C =14475.990479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 H 0.084 0.916 4 C -0.126 4.126 5 C 0.121 3.879 6 N -0.710 5.710 7 C 0.530 3.470 8 O -0.570 6.570 9 C -0.128 4.128 10 S -0.158 6.158 11 C -0.545 4.545 12 H 0.084 0.916 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.256 1.256 19 N -0.703 5.703 20 C 0.349 3.651 21 N -0.491 5.491 22 C 0.108 3.892 23 C 0.010 3.990 24 N -0.461 5.461 25 C 0.160 3.840 26 F -0.121 7.121 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.419 0.581 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.271 0.729 38 H 0.416 0.584 39 H 0.220 0.780 40 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.182 7.023 -13.738 31.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.053 3.947 3 H 0.103 0.897 4 C -0.163 4.163 5 C -0.003 4.003 6 N -0.365 5.365 7 C 0.316 3.684 8 O -0.448 6.448 9 C -0.279 4.279 10 S 0.069 5.931 11 C -0.692 4.692 12 H 0.103 0.897 13 C -0.194 4.194 14 N -0.549 5.549 15 Si 0.822 3.178 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.180 1.180 19 N -0.336 5.336 20 C 0.107 3.893 21 N -0.214 5.214 22 C -0.053 4.053 23 C -0.151 4.151 24 N -0.180 5.180 25 C -0.004 4.004 26 F -0.101 7.101 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.257 0.743 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.254 0.746 39 H 0.236 0.764 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -25.795 7.979 -14.796 30.789 hybrid contribution -0.068 -1.971 1.546 2.505 sum -25.863 6.008 -13.250 29.674 Atomic orbital electron populations 1.22102 0.93423 1.02704 1.02894 1.20972 0.94935 0.96884 0.81881 0.89741 1.22087 0.91742 1.03582 0.98938 1.21357 0.95574 0.96545 0.86774 1.45707 1.06002 1.57270 1.27514 1.20137 0.83020 0.79278 0.85942 1.90701 1.56772 1.46788 1.50571 1.23367 1.00858 1.04430 0.99277 1.85640 0.99920 1.73392 1.34106 1.23202 0.96222 1.40087 1.09728 0.89745 1.26166 0.94705 0.96550 1.01937 1.70190 0.99938 1.44190 1.40565 0.84929 0.78218 0.77974 0.76701 1.19333 1.20370 1.18024 1.44883 1.69889 1.12754 1.06066 1.19127 0.92946 0.90328 0.86867 1.68204 1.19765 1.04470 1.28994 1.24297 0.91675 1.02725 0.86568 1.23874 1.00505 0.88101 1.02600 1.67578 1.13292 1.11608 1.25515 1.18597 1.08600 0.81329 0.91913 1.91572 1.90943 1.31185 1.96387 0.91842 0.89689 0.93190 0.86798 0.88581 0.93415 0.93059 0.74319 0.86960 0.87062 0.92013 0.74594 0.76388 0.77332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.50 71.98 0.68 -0.70 16 2 C 0.16 1.89 2.60 44.99 0.12 2.00 16 3 H 0.08 1.25 7.56 -2.39 -0.02 1.23 16 4 C -0.13 -1.27 4.87 30.59 0.15 -1.12 16 5 C 0.12 2.48 5.56 86.38 0.48 2.97 16 6 N -0.71 -16.52 5.56 -463.05 -2.57 -19.09 16 7 C 0.53 19.38 7.85 87.66 0.69 20.07 16 8 O -0.57 -26.93 15.86 -3.03 -0.05 -26.98 16 9 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 10 S -0.16 -8.82 20.57 -56.49 -1.16 -9.98 16 11 C -0.54 -31.08 9.50 67.95 0.65 -30.43 16 12 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 13 C 0.01 0.63 5.49 84.86 0.47 1.09 16 14 N -0.91 -56.44 13.22 21.65 0.29 -56.16 16 15 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 19 N -0.70 -10.92 4.68 -323.89 -1.52 -12.44 16 20 C 0.35 6.72 7.48 133.10 1.00 7.71 16 21 N -0.49 -8.19 9.38 -192.42 -1.80 -9.99 16 22 C 0.11 1.17 11.21 84.58 0.95 2.12 16 23 C 0.01 0.13 11.21 84.57 0.95 1.08 16 24 N -0.46 -9.93 10.50 -195.80 -2.06 -11.98 16 25 C 0.16 3.62 8.47 84.99 0.72 4.34 16 26 F -0.12 -2.98 16.68 44.97 0.75 -2.23 16 27 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 1.18 7.75 -2.39 -0.02 1.16 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.42 6.31 8.47 -92.71 -0.79 5.53 16 35 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 36 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 37 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 38 H 0.42 6.05 8.09 -92.70 -0.75 5.30 16 39 H 0.22 0.36 8.06 -2.92 -0.02 0.34 16 40 H 0.21 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -85.20 366.44 0.74 -84.46 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -0.45 Total: 14.21 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 7.28 Total: 4.58 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -7.66 Total: -109.66 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.75 Total: -2.23 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.98 kcal Total: -85.20 0.74 -84.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098842653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.268 kcal (2) G-P(sol) polarization free energy of solvation -85.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds