Wall clock time and date at job start Tue Mar 31 2020 16:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.53000 * 109.46840 * 269.99975 * 4 3 2 6 6 N 1.46499 * 109.46840 * 179.97438 * 5 4 3 7 7 C 1.34779 * 119.99872 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00093 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.47324 * 179.97438 * 9 7 6 11 11 C 1.76198 * 100.00237 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99945 * 0.02562 * 11 10 9 13 13 C 1.38795 * 119.99810 * 180.02562 * 11 10 9 14 14 N 1.31626 * 120.00234 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99877 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46956 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47004 * 119.99779 * 15 13 11 18 18 H 1.48499 * 109.46781 * 240.00012 * 15 13 11 19 19 C 1.39160 * 119.99704 * 269.99425 * 3 2 1 20 20 C 1.39205 * 120.06048 * 184.72601 * 19 3 2 21 21 N 1.32014 * 119.93192 * 179.71073 * 20 19 3 22 22 C 1.32391 * 120.05227 * 0.56832 * 21 20 19 23 23 F 1.35105 * 119.94114 * 179.73116 * 22 21 20 24 24 C 1.38469 * 120.12688 * 359.71144 * 22 21 20 25 25 N 1.32212 * 120.06737 * 359.97438 * 24 22 21 26 26 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 27 27 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 28 28 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 30 30 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 31 31 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 32 32 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 33 33 H 1.09001 * 109.47194 * 299.99493 * 5 4 3 34 34 H 1.08992 * 109.47399 * 59.99666 * 5 4 3 35 35 H 0.97005 * 120.00448 * 359.97438 * 6 5 4 36 36 H 1.08998 * 109.47224 * 300.00395 * 9 7 6 37 37 H 1.09002 * 109.47152 * 59.99840 * 9 7 6 38 38 H 0.97007 * 120.00127 * 179.97438 * 14 13 11 39 39 H 1.08008 * 120.03356 * 0.02562 * 20 19 3 40 40 H 1.07996 * 119.97072 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 0.9874 2.7932 1.7103 6 7 1.2314 3.4833 2.9793 7 6 0.2433 4.1904 3.5626 8 8 -0.8476 4.2557 3.0368 9 6 0.4941 4.8999 4.8683 10 16 -1.0137 5.7545 5.3900 11 6 -0.4510 6.4764 6.8956 12 1 0.5654 6.3172 7.2240 13 6 -1.3141 7.2498 7.6594 14 7 -2.5527 7.4442 7.2589 15 14 -0.7173 8.0158 9.2553 16 1 0.7041 7.6490 9.4792 17 1 -0.8404 9.4933 9.1715 18 1 -1.5414 7.5135 10.3839 19 6 2.2503 2.0372 -1.2052 20 6 2.8066 3.3132 -1.2088 21 7 3.0309 3.9308 -2.3538 22 6 2.7168 3.3421 -3.4972 23 9 2.9423 3.9785 -4.6675 24 6 2.1579 2.0753 -3.4962 25 7 1.9369 1.4497 -2.3525 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.0644 2.7986 1.1383 32 1 2.5506 1.3453 2.0283 33 1 0.6993 3.5198 0.9506 34 1 0.1856 2.0665 1.8406 35 1 2.1041 3.4315 3.3997 36 1 0.7813 4.1727 5.6277 37 1 1.2966 5.6261 4.7389 38 1 -3.1561 7.9844 7.7930 39 1 3.0593 3.7954 -0.2759 40 1 1.9022 1.5976 -4.4304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100448870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:25 Heat of formation + Delta-G solvation = -41.999159 kcal Electronic energy + Delta-G solvation = -24386.992457 eV Core-core repulsion = 20470.354246 eV Total energy + Delta-G solvation = -3916.638210 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = -1.17 seconds Orbital eigenvalues (eV) -49.97313 -42.16767 -40.63740 -38.70006 -35.99476 -35.15280 -34.57551 -32.80351 -31.99408 -30.46831 -28.59769 -27.62994 -26.17078 -25.18689 -23.80455 -22.44344 -21.76508 -19.87566 -19.34921 -19.14545 -18.55472 -17.71790 -17.41982 -17.20329 -16.87214 -16.79633 -16.13212 -16.06099 -15.86823 -15.48043 -15.10393 -14.98582 -14.73659 -14.66465 -14.45676 -14.28791 -14.06704 -13.54400 -13.25315 -13.14914 -12.91282 -12.81790 -12.68992 -12.58216 -12.46548 -12.38013 -11.80284 -11.70262 -11.17165 -11.15302 -10.97805 -10.32939 -10.25139 -10.14789 -8.79751 -8.65844 -8.34096 -6.11892 -0.30674 -0.02523 1.24799 1.42085 1.42291 1.53953 1.61797 1.64883 2.27642 2.37196 2.45742 2.52068 3.00471 3.15596 3.20520 3.34019 3.68697 3.78654 3.85880 4.02173 4.03384 4.18421 4.29506 4.33964 4.39509 4.46655 4.52359 4.54727 4.66958 4.81520 4.93556 5.03462 5.19934 5.34065 5.38405 5.43398 5.64255 5.96004 6.21007 6.23726 6.50725 6.62860 7.07687 7.25983 8.75294 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.002112 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.256491 B =13255.452071 C =13967.133859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.584 5.584 4 C 0.116 3.884 5 C 0.102 3.898 6 N -0.707 5.707 7 C 0.534 3.466 8 O -0.568 6.568 9 C -0.128 4.128 10 S -0.159 6.159 11 C -0.542 4.542 12 H 0.085 0.915 13 C 0.011 3.989 14 N -0.913 5.913 15 Si 0.999 3.001 16 H -0.254 1.254 17 H -0.276 1.276 18 H -0.275 1.275 19 C 0.347 3.653 20 C 0.025 3.975 21 N -0.459 5.459 22 C 0.161 3.839 23 F -0.117 7.117 24 C 0.108 3.892 25 N -0.485 5.485 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.129 0.871 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.422 0.578 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.270 0.730 39 H 0.194 0.806 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.598 -17.929 -16.363 29.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.001 3.999 3 N -0.296 5.296 4 C -0.007 4.007 5 C -0.024 4.024 6 N -0.362 5.362 7 C 0.320 3.680 8 O -0.446 6.446 9 C -0.279 4.279 10 S 0.068 5.932 11 C -0.690 4.690 12 H 0.103 0.897 13 C -0.194 4.194 14 N -0.549 5.549 15 Si 0.821 3.179 16 H -0.178 1.178 17 H -0.201 1.201 18 H -0.200 1.200 19 C 0.109 3.891 20 C -0.144 4.144 21 N -0.177 5.177 22 C 0.004 3.996 23 F -0.097 7.097 24 C -0.055 4.055 25 N -0.207 5.207 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.147 0.853 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.260 0.740 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.079 0.921 39 H 0.210 0.790 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 14.638 -17.869 -17.139 28.763 hybrid contribution 1.165 0.987 1.163 1.919 sum 15.803 -16.882 -15.976 28.107 Atomic orbital electron populations 1.22212 0.96724 1.02726 1.01087 1.21638 0.93647 0.80059 1.04523 1.46592 1.68232 1.13871 1.00881 1.21897 0.95343 0.98648 0.84801 1.21867 0.99775 0.95870 0.84876 1.45477 1.15037 1.51757 1.23950 1.20089 0.84090 0.78302 0.85545 1.90711 1.26166 1.62346 1.65422 1.23365 1.03781 1.03165 0.97608 1.85655 1.15546 1.63655 1.28346 1.23232 1.01166 1.36699 1.07876 0.89677 1.26143 0.94591 0.96152 1.02473 1.70196 1.06385 1.38389 1.39970 0.84901 0.78962 0.77640 0.76419 1.17799 1.20145 1.20039 1.19541 0.91370 0.90281 0.87945 1.23307 1.01992 0.92713 0.96382 1.67534 1.15043 1.36484 0.98635 1.19044 1.06101 0.92414 0.82004 1.91599 1.93018 1.82550 1.42511 1.23716 0.93389 0.89978 0.98416 1.68125 1.20024 1.35463 0.97077 0.93388 0.94216 0.90198 0.89641 0.87590 0.87252 0.85290 0.93669 0.92030 0.73976 0.86729 0.86923 0.92074 0.78979 0.77257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 71.98 0.74 -1.49 16 2 C 0.12 1.17 6.16 86.38 0.53 1.71 16 3 N -0.58 -6.71 2.59 -703.43 -1.82 -8.53 16 4 C 0.12 0.92 5.41 86.38 0.47 1.39 16 5 C 0.10 1.78 6.00 86.38 0.52 2.30 16 6 N -0.71 -13.96 5.56 -463.07 -2.57 -16.53 16 7 C 0.53 18.03 7.85 87.66 0.69 18.72 16 8 O -0.57 -25.48 15.86 -3.01 -0.05 -25.53 16 9 C -0.13 -4.69 6.16 71.24 0.44 -4.25 16 10 S -0.16 -8.65 20.57 -56.49 -1.16 -9.81 16 11 C -0.54 -30.26 9.50 67.95 0.65 -29.62 16 12 H 0.09 4.37 7.80 -2.91 -0.02 4.35 16 13 C 0.01 0.61 5.49 84.86 0.47 1.08 16 14 N -0.91 -55.77 13.22 21.65 0.29 -55.49 16 15 Si 1.00 42.96 29.55 68.60 2.03 44.99 16 16 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 17 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 C 0.35 5.57 7.37 132.95 0.98 6.55 16 20 C 0.03 0.44 10.42 84.90 0.89 1.32 16 21 N -0.46 -10.24 10.50 -195.81 -2.06 -12.30 16 22 C 0.16 3.24 8.43 84.66 0.71 3.95 16 23 F -0.12 -2.47 17.29 44.97 0.78 -1.69 16 24 C 0.11 1.64 11.20 84.69 0.95 2.59 16 25 N -0.48 -8.17 9.34 -192.40 -1.80 -9.96 16 26 H 0.05 0.76 6.26 -2.39 -0.01 0.74 16 27 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 0.88 7.47 -2.39 -0.02 0.86 16 30 H 0.11 0.48 7.89 -2.39 -0.02 0.46 16 31 H 0.11 0.47 6.01 -2.39 -0.01 0.45 16 32 H 0.13 0.30 7.89 -2.39 -0.02 0.28 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.29 6.26 -2.39 -0.01 1.28 16 35 H 0.42 4.60 8.47 -92.70 -0.79 3.82 16 36 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 37 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 38 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 39 H 0.19 2.36 6.04 -2.91 -0.02 2.34 16 40 H 0.21 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -83.10 361.23 1.96 -81.14 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.30 Total: 9.45 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 8.02 Total: 4.25 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -7.96 Total: -102.80 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.05 Total: -25.53 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.78 Total: -1.69 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -83.10 1.96 -81.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100448870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.142 kcal (2) G-P(sol) polarization free energy of solvation -83.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.17 seconds