Wall clock time and date at job start Tue Mar 31 2020 16:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46493 * 119.99899 * 270.00188 * 3 2 1 5 5 C 1.52997 * 109.47377 * 90.00269 * 4 3 2 6 6 N 1.46497 * 109.47148 * 179.97438 * 5 4 3 7 7 C 1.34783 * 119.99918 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99816 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99862 * 180.02562 * 7 6 5 10 10 S 1.80998 * 109.46790 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99866 * 179.97438 * 10 9 7 12 12 H 1.08004 * 119.99913 * 0.02562 * 11 10 9 13 13 C 1.38792 * 120.00147 * 180.02562 * 11 10 9 14 14 N 1.31633 * 120.00368 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00020 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47166 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47148 * 119.99759 * 15 13 11 18 18 H 1.48500 * 109.46977 * 239.99334 * 15 13 11 19 19 C 1.38536 * 119.99687 * 89.99917 * 3 2 1 20 20 N 1.32459 * 119.18847 * 179.72737 * 19 3 2 21 21 C 1.32293 * 120.76573 * 179.75881 * 20 19 3 22 22 C 1.38777 * 119.16881 * 0.51203 * 21 20 19 23 23 F 1.35105 * 120.74824 * 179.72591 * 22 21 20 24 24 C 1.38788 * 118.51289 * 359.74329 * 22 21 20 25 25 N 1.32292 * 119.16333 * 0.02562 * 24 22 21 26 26 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 27 27 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 30 30 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 31 31 H 1.09006 * 109.46911 * 209.99921 * 4 3 2 32 32 H 1.08996 * 109.47170 * 329.99434 * 4 3 2 33 33 H 1.09006 * 109.46817 * 299.99710 * 5 4 3 34 34 H 1.08996 * 109.47652 * 59.99460 * 5 4 3 35 35 H 0.97006 * 120.00132 * 0.02562 * 6 5 4 36 36 H 1.08996 * 109.46747 * 300.00430 * 9 7 6 37 37 H 1.08998 * 109.46921 * 60.00323 * 9 7 6 38 38 H 0.96995 * 120.00500 * 180.02562 * 14 13 11 39 39 H 1.07998 * 120.41544 * 180.23052 * 21 20 19 40 40 H 1.08001 * 120.41753 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 0.9875 2.7931 -1.7103 6 7 1.2319 3.4842 -2.9787 7 6 0.2436 4.1907 -3.5625 8 8 -0.8477 4.2547 -3.0375 9 6 0.4949 4.9012 -4.8677 10 16 -1.0134 5.7546 -5.3900 11 6 -0.4502 6.4779 -6.8947 12 1 0.5665 6.3190 -7.2229 13 6 -1.3130 7.2517 -7.6584 14 7 -2.5522 7.4449 -7.2588 15 14 -0.7160 8.0179 -9.2541 16 1 0.7056 7.6516 -9.4776 17 1 -1.5402 7.5161 -10.3828 18 1 -0.8388 9.4954 -9.1700 19 6 2.2492 2.0343 1.1998 20 7 2.6959 3.2811 1.1811 21 6 2.9224 3.9357 2.3082 22 6 2.6964 3.2963 3.5189 23 9 2.9225 3.9328 4.6890 24 6 2.2334 1.9881 3.5009 25 7 2.0235 1.3945 2.3375 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.0644 2.7985 -1.1383 32 1 2.5506 1.3452 -2.0283 33 1 0.1856 2.0665 -1.8407 34 1 0.6994 3.5198 -0.9507 35 1 2.1048 3.4327 -3.3988 36 1 1.2966 5.6279 -4.7372 37 1 0.7832 4.1745 -5.6272 38 1 -3.1553 7.9853 -7.7927 39 1 3.2831 4.9535 2.2863 40 1 2.0475 1.4611 4.4251 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100449104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:41 Heat of formation + Delta-G solvation = -17.389444 kcal Electronic energy + Delta-G solvation = -24380.832130 eV Core-core repulsion = 20465.261077 eV Total energy + Delta-G solvation = -3915.571053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 3.71 seconds Orbital eigenvalues (eV) -49.19467 -41.37441 -39.23360 -37.74217 -34.70112 -34.17927 -32.43026 -31.94671 -31.11004 -29.49140 -27.63547 -25.51337 -25.32270 -24.40352 -23.01201 -21.75729 -20.42348 -18.59149 -18.31160 -17.83698 -17.67056 -16.48285 -16.28729 -16.01480 -15.76769 -15.33935 -15.10753 -14.90336 -14.80532 -14.45371 -14.02119 -13.87713 -13.77076 -13.47034 -13.38341 -13.08570 -12.68180 -12.50472 -12.11523 -12.09293 -11.94453 -11.55486 -11.39386 -11.12238 -11.06837 -11.02129 -10.76606 -10.44143 -9.80983 -9.51586 -9.42818 -9.08071 -8.90303 -8.27264 -8.22989 -6.50180 -6.21903 -3.92446 0.57289 0.59001 2.08430 3.06329 3.09742 3.21428 3.28347 3.32091 3.34994 3.60395 3.63947 3.74878 4.08233 4.20087 4.38838 4.42931 4.65015 4.68266 4.75948 4.97196 5.09316 5.13340 5.15860 5.18179 5.19241 5.46738 5.47296 5.62809 5.70146 5.84868 5.89635 5.92450 6.04564 6.13626 6.29703 6.35194 6.59233 6.91696 7.59688 7.67728 7.74058 8.35295 8.60482 9.23522 10.85595 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.020590 B = 0.002110 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.558127 B =13265.738939 C =13971.033443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.126 3.874 3 N -0.574 5.574 4 C 0.120 3.880 5 C 0.107 3.893 6 N -0.736 5.736 7 C 0.533 3.467 8 O -0.517 6.517 9 C -0.152 4.152 10 S -0.061 6.061 11 C -0.534 4.534 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.559 3.441 20 N -0.540 5.540 21 C 0.177 3.823 22 C -0.077 4.077 23 F -0.128 7.128 24 C 0.173 3.827 25 N -0.543 5.543 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.268 0.732 39 H 0.179 0.821 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.438 -15.147 19.607 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.004 3.996 3 N -0.290 5.290 4 C -0.004 4.004 5 C -0.019 4.019 6 N -0.392 5.392 7 C 0.319 3.681 8 O -0.391 6.391 9 C -0.303 4.303 10 S 0.165 5.835 11 C -0.682 4.682 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.503 5.503 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C 0.204 3.796 20 N -0.261 5.261 21 C 0.007 3.993 22 C -0.105 4.105 23 F -0.107 7.107 24 C 0.003 3.997 25 N -0.264 5.264 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.232 0.768 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.196 0.804 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 12.240 -15.550 19.411 27.720 hybrid contribution 2.129 1.042 -0.749 2.486 sum 14.368 -14.507 18.661 27.662 Atomic orbital electron populations 1.22260 0.95554 1.02455 1.02872 1.21554 0.94692 0.79940 1.03440 1.46134 1.68298 1.13446 1.01100 1.21654 0.97843 0.97211 0.83682 1.21686 0.97426 0.96472 0.86322 1.45839 1.15309 1.53933 1.24105 1.20310 0.83861 0.77960 0.85984 1.90707 1.23749 1.60269 1.64331 1.23522 1.07758 1.02802 0.96211 1.85423 1.09011 1.61790 1.27265 1.22904 1.00672 1.36691 1.07974 0.90855 1.25002 0.94575 0.95701 0.98384 1.70028 1.04757 1.37332 1.38184 0.86110 0.78791 0.78829 0.81719 1.19613 1.20576 1.20570 1.19335 0.88252 0.85567 0.86454 1.68001 1.19416 1.08353 1.30356 1.23163 0.90785 0.99950 0.85406 1.19138 1.12577 0.95086 0.83664 1.91518 1.93060 1.81456 1.44699 1.23108 0.89847 0.90079 0.96617 1.67958 1.23240 1.38082 0.97135 0.92012 0.91328 0.92203 0.90148 0.89252 0.88615 0.89527 0.91462 0.91434 0.76805 0.89141 0.89173 0.92237 0.80390 0.80526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.13 0.90 6.17 -4.04 -0.02 0.87 16 3 N -0.57 -5.15 2.58 -176.01 -0.45 -5.61 16 4 C 0.12 1.01 5.57 -4.05 -0.02 0.99 16 5 C 0.11 1.27 6.00 -4.04 -0.02 1.24 16 6 N -0.74 -9.58 5.56 -60.29 -0.33 -9.91 16 7 C 0.53 9.93 7.85 -10.98 -0.09 9.85 16 8 O -0.52 -11.92 15.86 5.56 0.09 -11.83 16 9 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16 12 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 15 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.56 5.79 8.18 -322.70 -2.64 3.15 16 20 N -0.54 -5.67 9.11 -13.87 -0.13 -5.80 16 21 C 0.18 1.52 11.29 -17.15 -0.19 1.33 16 22 C -0.08 -0.63 7.38 -39.18 -0.29 -0.92 16 23 F -0.13 -1.08 17.30 2.25 0.04 -1.04 16 24 C 0.17 1.34 11.29 -17.15 -0.19 1.15 16 25 N -0.54 -5.19 9.11 -13.86 -0.13 -5.32 16 26 H 0.06 0.57 6.26 -51.93 -0.33 0.25 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.43 7.89 -51.93 -0.41 0.02 16 30 H 0.09 0.64 7.33 -51.93 -0.38 0.26 16 31 H 0.10 0.83 7.33 -51.93 -0.38 0.45 16 32 H 0.09 0.54 7.89 -51.93 -0.41 0.13 16 33 H 0.07 0.86 6.26 -51.93 -0.33 0.54 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.40 3.81 8.47 -40.82 -0.35 3.46 16 36 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.18 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 363.69 15.07 5.48 5.48 Total: -1.00 -36.11 363.69 -9.69 -45.80 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.08 Total: 0.30 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.67 Total: 0.92 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.31 Total: -52.11 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.11 -9.69 -45.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100449104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.412 kcal (2) G-P(sol) polarization free energy of solvation -36.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.71 seconds