Wall clock time and date at job start Tue Mar 31 2020 16:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46493 * 119.99899 * 270.00188 * 3 2 1 5 5 C 1.52997 * 109.47377 * 90.00269 * 4 3 2 6 6 N 1.46497 * 109.47148 * 179.97438 * 5 4 3 7 7 C 1.34783 * 119.99918 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99816 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99862 * 180.02562 * 7 6 5 10 10 S 1.80998 * 109.46790 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99866 * 179.97438 * 10 9 7 12 12 H 1.08004 * 119.99913 * 0.02562 * 11 10 9 13 13 C 1.38792 * 120.00147 * 180.02562 * 11 10 9 14 14 N 1.31633 * 120.00368 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00020 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47166 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47148 * 119.99759 * 15 13 11 18 18 H 1.48500 * 109.46977 * 239.99334 * 15 13 11 19 19 C 1.38536 * 119.99687 * 89.99917 * 3 2 1 20 20 N 1.32459 * 119.18847 * 179.72737 * 19 3 2 21 21 C 1.32293 * 120.76573 * 179.75881 * 20 19 3 22 22 C 1.38777 * 119.16881 * 0.51203 * 21 20 19 23 23 F 1.35105 * 120.74824 * 179.72591 * 22 21 20 24 24 C 1.38788 * 118.51289 * 359.74329 * 22 21 20 25 25 N 1.32292 * 119.16333 * 0.02562 * 24 22 21 26 26 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 27 27 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 30 30 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 31 31 H 1.09006 * 109.46911 * 209.99921 * 4 3 2 32 32 H 1.08996 * 109.47170 * 329.99434 * 4 3 2 33 33 H 1.09006 * 109.46817 * 299.99710 * 5 4 3 34 34 H 1.08996 * 109.47652 * 59.99460 * 5 4 3 35 35 H 0.97006 * 120.00132 * 0.02562 * 6 5 4 36 36 H 1.08996 * 109.46747 * 300.00430 * 9 7 6 37 37 H 1.08998 * 109.46921 * 60.00323 * 9 7 6 38 38 H 0.96995 * 120.00500 * 180.02562 * 14 13 11 39 39 H 1.07998 * 120.41544 * 180.23052 * 21 20 19 40 40 H 1.08001 * 120.41753 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 0.9875 2.7931 -1.7103 6 7 1.2319 3.4842 -2.9787 7 6 0.2436 4.1907 -3.5625 8 8 -0.8477 4.2547 -3.0375 9 6 0.4949 4.9012 -4.8677 10 16 -1.0134 5.7546 -5.3900 11 6 -0.4502 6.4779 -6.8947 12 1 0.5665 6.3190 -7.2229 13 6 -1.3130 7.2517 -7.6584 14 7 -2.5522 7.4449 -7.2588 15 14 -0.7160 8.0179 -9.2541 16 1 0.7056 7.6516 -9.4776 17 1 -1.5402 7.5161 -10.3828 18 1 -0.8388 9.4954 -9.1700 19 6 2.2492 2.0343 1.1998 20 7 2.6959 3.2811 1.1811 21 6 2.9224 3.9357 2.3082 22 6 2.6964 3.2963 3.5189 23 9 2.9225 3.9328 4.6890 24 6 2.2334 1.9881 3.5009 25 7 2.0235 1.3945 2.3375 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.0644 2.7985 -1.1383 32 1 2.5506 1.3452 -2.0283 33 1 0.1856 2.0665 -1.8407 34 1 0.6994 3.5198 -0.9507 35 1 2.1048 3.4327 -3.3988 36 1 1.2966 5.6279 -4.7372 37 1 0.7832 4.1745 -5.6272 38 1 -3.1553 7.9853 -7.7927 39 1 3.2831 4.9535 2.2863 40 1 2.0475 1.4611 4.4251 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100449104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:40 Heat of formation + Delta-G solvation = -40.613673 kcal Electronic energy + Delta-G solvation = -24381.839208 eV Core-core repulsion = 20465.261077 eV Total energy + Delta-G solvation = -3916.578131 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.85209 -42.04404 -40.63844 -38.51861 -35.85503 -34.92231 -34.57916 -32.58334 -32.17707 -30.65891 -28.64821 -27.63409 -26.01624 -25.12200 -23.83841 -22.46519 -21.78747 -19.88746 -19.24873 -18.95277 -18.36642 -17.77552 -17.39453 -16.96615 -16.87463 -16.80533 -16.11270 -16.05758 -15.90010 -15.54069 -15.06633 -14.97975 -14.75769 -14.49971 -14.40418 -14.04787 -14.04559 -13.57866 -13.30167 -13.15467 -12.91195 -12.82343 -12.67692 -12.58537 -12.37205 -12.08600 -11.82804 -11.71050 -11.15591 -11.15452 -10.98009 -10.26402 -10.19077 -10.15359 -8.95161 -8.66679 -8.34323 -6.12493 -0.10114 -0.04993 1.23173 1.39854 1.42119 1.52438 1.60087 1.62371 2.27209 2.35407 2.65515 2.96636 3.00015 3.04616 3.32334 3.45348 3.80121 3.80777 3.83760 3.97307 4.01578 4.17950 4.31828 4.37014 4.37897 4.51913 4.52627 4.60252 4.71526 4.84960 4.92832 5.01762 5.26949 5.33675 5.36589 5.42944 5.65815 5.75653 6.20765 6.24006 6.48988 7.05938 7.07152 7.23667 8.75200 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.020590 B = 0.002110 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.558127 B =13265.738939 C =13971.033443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.127 3.873 3 N -0.576 5.576 4 C 0.130 3.870 5 C 0.113 3.887 6 N -0.707 5.707 7 C 0.534 3.466 8 O -0.569 6.569 9 C -0.127 4.127 10 S -0.157 6.157 11 C -0.543 4.543 12 H 0.085 0.915 13 C 0.011 3.989 14 N -0.913 5.913 15 Si 1.000 3.000 16 H -0.255 1.255 17 H -0.274 1.274 18 H -0.275 1.275 19 C 0.542 3.458 20 N -0.561 5.561 21 C 0.169 3.831 22 C -0.079 4.079 23 F -0.129 7.129 24 C 0.174 3.826 25 N -0.553 5.553 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.420 0.580 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.271 0.729 39 H 0.198 0.802 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.111 -16.229 19.067 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.005 3.995 3 N -0.292 5.292 4 C 0.007 3.993 5 C -0.012 4.012 6 N -0.362 5.362 7 C 0.320 3.680 8 O -0.447 6.447 9 C -0.278 4.278 10 S 0.070 5.930 11 C -0.690 4.690 12 H 0.103 0.897 13 C -0.194 4.194 14 N -0.549 5.549 15 Si 0.822 3.178 16 H -0.179 1.179 17 H -0.200 1.200 18 H -0.201 1.201 19 C 0.187 3.813 20 N -0.283 5.283 21 C 0.000 4.000 22 C -0.107 4.107 23 F -0.108 7.108 24 C 0.005 3.995 25 N -0.275 5.275 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.138 0.862 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.258 0.742 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.215 0.785 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 14.982 -16.663 18.892 29.309 hybrid contribution 1.337 1.312 -0.424 1.921 sum 16.319 -15.351 18.469 29.035 Atomic orbital electron populations 1.22209 0.96479 1.02954 1.00953 1.21683 0.93775 0.79253 1.04804 1.46293 1.68178 1.13914 1.00803 1.21615 0.95475 0.97882 0.84370 1.21715 0.99422 0.95506 0.84607 1.45504 1.14969 1.51784 1.23910 1.20120 0.84043 0.78263 0.85594 1.90697 1.26102 1.62416 1.65525 1.23354 1.03865 1.03126 0.97466 1.85640 1.15309 1.63625 1.28414 1.23233 1.01179 1.36711 1.07918 0.89723 1.26155 0.94582 0.96123 1.02492 1.70195 1.06354 1.38366 1.40015 0.84885 0.78930 0.77657 0.76344 1.17863 1.19970 1.20052 1.19645 0.88592 0.85850 0.87193 1.68018 1.20400 1.08696 1.31189 1.23536 0.90398 1.00774 0.85272 1.19176 1.12663 0.95344 0.83518 1.91516 1.93088 1.81521 1.44702 1.23611 0.88645 0.90084 0.97175 1.68023 1.23676 1.38345 0.97423 0.93577 0.89645 0.94330 0.87539 0.89071 0.88413 0.86189 0.92278 0.94372 0.74229 0.87038 0.86728 0.92038 0.78479 0.77635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 10.24 71.98 0.74 -1.80 16 2 C 0.13 1.57 6.17 86.38 0.53 2.10 16 3 N -0.58 -9.48 2.58 -710.78 -1.83 -11.31 16 4 C 0.13 1.91 5.57 86.38 0.48 2.39 16 5 C 0.11 2.60 6.00 86.38 0.52 3.11 16 6 N -0.71 -17.12 5.56 -463.06 -2.57 -19.69 16 7 C 0.53 19.63 7.85 87.66 0.69 20.32 16 8 O -0.57 -26.97 15.86 -3.01 -0.05 -27.02 16 9 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 10 S -0.16 -8.74 20.57 -56.49 -1.16 -9.90 16 11 C -0.54 -30.83 9.50 67.95 0.65 -30.18 16 12 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 13 C 0.01 0.62 5.49 84.86 0.47 1.09 16 14 N -0.91 -56.27 13.22 21.65 0.29 -55.98 16 15 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 16 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 18 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 19 C 0.54 10.77 8.18 261.45 2.14 12.91 16 20 N -0.56 -11.41 9.11 -197.78 -1.80 -13.21 16 21 C 0.17 2.79 11.29 84.75 0.96 3.75 16 22 C -0.08 -1.23 7.38 22.53 0.17 -1.07 16 23 F -0.13 -2.04 17.30 44.97 0.78 -1.26 16 24 C 0.17 2.49 11.29 84.76 0.96 3.45 16 25 N -0.55 -10.05 9.11 -197.77 -1.80 -11.85 16 26 H 0.05 0.84 6.26 -2.39 -0.01 0.82 16 27 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.11 0.78 7.89 -2.39 -0.02 0.76 16 30 H 0.09 1.13 7.33 -2.39 -0.02 1.11 16 31 H 0.10 1.45 7.33 -2.38 -0.02 1.44 16 32 H 0.12 1.00 7.89 -2.39 -0.02 0.98 16 33 H 0.06 1.50 6.26 -2.38 -0.01 1.48 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.42 6.65 8.47 -92.70 -0.79 5.86 16 36 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 37 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.20 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.21 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -81.71 363.69 2.90 -78.81 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.29 Total: 14.36 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 8.73 Total: 11.57 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -7.72 Total: -112.05 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.05 Total: -27.02 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.78 Total: -1.26 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.90 kcal Total: -81.71 2.90 -78.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100449104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.196 kcal (2) G-P(sol) polarization free energy of solvation -81.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds