Wall clock time and date at job start Tue Mar 31 2020 16:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46904 * 109.46731 * 2 1 4 4 C 1.46900 * 110.99890 * 294.36281 * 3 2 1 5 5 C 1.52996 * 109.47534 * 287.87053 * 4 3 2 6 6 N 1.46498 * 109.47438 * 179.91097 * 5 4 3 7 7 C 1.34782 * 120.00245 * 180.02562 * 6 5 4 8 8 O 1.21275 * 119.99796 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99775 * 180.02562 * 7 6 5 10 10 S 1.80997 * 109.46701 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99962 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00216 * 0.02562 * 11 10 9 13 13 C 1.38810 * 120.00193 * 179.97438 * 11 10 9 14 14 N 1.31629 * 119.99833 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99595 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47598 * 89.99851 * 15 13 11 17 17 H 1.48506 * 109.46957 * 209.99833 * 15 13 11 18 18 H 1.48498 * 109.47252 * 329.99309 * 15 13 11 19 19 C 1.39109 * 111.00443 * 58.32184 * 3 2 1 20 20 N 1.32573 * 120.11022 * 236.04591 * 19 3 2 21 21 C 1.32305 * 119.94212 * 179.97438 * 20 19 3 22 22 C 1.38060 * 120.16812 * 0.02562 * 21 20 19 23 23 N 1.32351 * 120.22456 * 359.97438 * 22 21 20 24 24 C 1.32075 * 120.04837 * 359.97438 * 23 22 21 25 25 F 1.35102 * 120.08104 * 179.97438 * 24 23 22 26 26 H 1.08996 * 109.46896 * 305.38260 * 1 2 3 27 27 H 1.09000 * 109.47090 * 65.38436 * 1 2 3 28 28 H 1.09003 * 109.46773 * 185.38345 * 1 2 3 29 29 H 1.09001 * 109.46988 * 240.00469 * 2 1 3 30 30 H 1.08990 * 109.46916 * 119.99721 * 2 1 3 31 31 H 1.09003 * 109.47241 * 47.87572 * 4 3 2 32 32 H 1.09003 * 109.46866 * 167.87059 * 4 3 2 33 33 H 1.08996 * 109.47363 * 299.91394 * 5 4 3 34 34 H 1.09003 * 109.46909 * 59.91603 * 5 4 3 35 35 H 0.96999 * 119.99853 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.46839 * 299.99139 * 9 7 6 37 37 H 1.08995 * 109.47391 * 59.99738 * 9 7 6 38 38 H 0.97003 * 119.99639 * 180.02562 * 14 13 11 39 39 H 1.07998 * 119.91932 * 179.97438 * 21 20 19 40 40 H 1.07999 * 119.89473 * 179.72248 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6617 2.0699 -1.2493 5 6 2.5171 1.5231 -2.3939 6 7 2.1586 2.2046 -3.6402 7 6 2.7865 1.8834 -4.7887 8 8 3.6486 1.0304 -4.7904 9 6 2.4181 2.5849 -6.0706 10 16 3.4299 1.9379 -7.4246 11 6 2.8076 2.9040 -8.7603 12 1 2.0280 3.6302 -8.5841 13 6 3.3201 2.7323 -10.0389 14 7 2.8554 3.4544 -11.0365 15 14 4.6690 1.4767 -10.3435 16 1 4.0582 0.1658 -10.6811 17 1 5.5221 1.9303 -11.4712 18 1 5.4994 1.3356 -9.1205 19 6 1.5428 2.0825 1.1052 20 7 0.8646 3.2093 0.9386 21 6 0.4121 3.8696 1.9920 22 6 0.6450 3.3885 3.2650 23 7 1.3214 2.2643 3.4389 24 6 1.7761 1.5975 2.3935 25 9 2.4670 0.4501 2.5703 26 1 -0.3633 0.5950 0.8378 27 1 -0.3633 0.4281 -0.9343 28 1 -0.3633 -1.0232 0.0964 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8899 31 1 0.6080 1.8979 -1.4689 32 1 1.8404 3.1398 -1.1412 33 1 3.5707 1.6965 -2.1751 34 1 2.3395 0.4530 -2.5010 35 1 1.4693 2.8871 -3.6388 36 1 1.3643 2.4121 -6.2894 37 1 2.5963 3.6548 -5.9634 38 1 3.2133 3.3342 -11.9301 39 1 -0.1400 4.7878 1.8559 40 1 0.2775 3.9335 4.1219 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100450375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:38 Heat of formation + Delta-G solvation = -7.906806 kcal Electronic energy + Delta-G solvation = -24661.891705 eV Core-core repulsion = 20746.731850 eV Total energy + Delta-G solvation = -3915.159855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 6.42 seconds Orbital eigenvalues (eV) -49.59449 -41.81196 -39.51008 -38.64133 -34.91257 -34.53413 -32.44380 -31.71960 -31.20765 -29.58991 -27.88951 -25.64591 -25.30617 -24.73557 -23.58343 -21.24883 -20.57480 -18.82918 -18.56650 -17.87694 -17.79692 -17.20301 -16.47631 -16.30547 -15.90726 -15.43932 -15.22212 -14.93044 -14.92244 -14.69566 -14.33038 -13.93634 -13.81873 -13.70173 -13.61501 -13.24456 -12.80432 -12.61717 -12.43781 -12.30246 -12.00152 -11.76769 -11.64260 -11.29820 -11.26622 -11.01054 -10.62101 -10.42842 -9.91173 -9.85442 -9.56662 -9.04324 -8.98567 -8.79316 -8.50815 -6.92534 -6.29466 -4.01240 0.05134 0.38272 2.40332 2.76597 2.83178 2.95176 3.06200 3.31588 3.34415 3.50527 3.55474 3.60474 3.81763 4.28149 4.32865 4.36393 4.48452 4.53158 4.58729 4.72226 4.77186 4.83222 4.86566 5.06760 5.09621 5.20563 5.31265 5.35426 5.48949 5.55450 5.63809 5.75944 5.81289 5.98860 6.00701 6.28466 6.46231 6.56479 7.01505 7.55745 7.93597 8.41097 8.45756 9.16715 10.79705 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.031147 B = 0.002051 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.737239 B =13651.298470 C =14102.748564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.033 3.967 3 N -0.461 5.461 4 C 0.047 3.953 5 C 0.124 3.876 6 N -0.736 5.736 7 C 0.532 3.468 8 O -0.517 6.517 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 C 0.266 3.734 20 N -0.453 5.453 21 C 0.072 3.928 22 C 0.048 3.952 23 N -0.447 5.447 24 C 0.247 3.753 25 F -0.095 7.095 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.271 0.729 39 H 0.181 0.819 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.485 -0.874 30.163 31.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.092 4.092 3 N -0.177 5.177 4 C -0.080 4.080 5 C -0.001 4.001 6 N -0.391 5.391 7 C 0.318 3.682 8 O -0.391 6.391 9 C -0.274 4.274 10 S 0.085 5.915 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.114 4.114 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 C 0.029 3.971 20 N -0.173 5.173 21 C -0.088 4.088 22 C -0.111 4.111 23 N -0.167 5.167 24 C 0.086 3.914 25 F -0.074 7.074 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.198 0.802 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.459 -2.370 29.931 30.712 hybrid contribution -1.426 0.836 -0.290 1.678 sum -7.885 -1.535 29.641 30.711 Atomic orbital electron populations 1.22430 0.96311 1.03419 1.02348 1.22679 0.94171 0.86225 1.06118 1.59097 1.53738 1.03692 1.01194 1.22310 0.99035 1.00176 0.86487 1.21174 0.99706 0.96992 0.82251 1.45821 1.42591 1.43178 1.07525 1.20266 0.81021 0.82639 0.84272 1.90708 1.30819 1.31801 1.85820 1.23272 1.05123 1.03555 0.95482 1.84803 1.51100 1.54720 1.00906 1.22316 1.26108 1.25327 0.93150 0.89369 1.24722 0.96283 0.95524 0.94838 1.69940 1.41939 1.39259 1.00533 0.86730 0.82858 0.81849 0.80387 1.19212 1.19945 1.15900 1.20559 0.92903 0.92987 0.90690 1.68547 1.07975 1.06600 1.34142 1.23722 0.96700 0.99860 0.88483 1.23453 0.96764 0.91919 0.98985 1.67743 1.08575 1.07664 1.32706 1.18513 0.97264 0.86484 0.89187 1.91617 1.75593 1.44424 1.95774 0.93315 0.91407 0.90597 0.87758 0.88332 0.91649 0.88200 0.90583 0.91385 0.76607 0.88456 0.88373 0.91941 0.80174 0.80225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.25 9.35 37.16 0.35 -0.90 16 2 C 0.03 0.25 5.62 -3.82 -0.02 0.22 16 3 N -0.46 -4.06 4.66 -172.95 -0.81 -4.87 16 4 C 0.05 0.40 4.36 -3.83 -0.02 0.38 16 5 C 0.12 1.34 5.73 -4.04 -0.02 1.31 16 6 N -0.74 -8.93 5.56 -60.30 -0.33 -9.27 16 7 C 0.53 9.23 7.85 -10.98 -0.09 9.14 16 8 O -0.52 -11.04 15.86 5.56 0.09 -10.95 16 9 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 10 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 11 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 12 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 13 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 14 N -0.88 -26.48 13.97 55.49 0.78 -25.70 16 15 Si 0.86 21.75 27.74 -169.99 -4.71 17.03 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 19 C 0.27 2.38 4.83 -154.59 -0.75 1.63 16 20 N -0.45 -3.59 8.65 -12.17 -0.11 -3.70 16 21 C 0.07 0.37 11.21 -17.41 -0.20 0.18 16 22 C 0.05 0.25 11.21 -17.39 -0.19 0.06 16 23 N -0.45 -3.93 10.50 -13.24 -0.14 -4.07 16 24 C 0.25 2.35 8.09 -16.93 -0.14 2.21 16 25 F -0.09 -0.94 14.85 2.25 0.03 -0.91 16 26 H 0.05 0.36 6.95 -51.93 -0.36 0.00 16 27 H 0.07 0.46 6.56 -51.93 -0.34 0.12 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.74 6.52 -51.93 -0.34 0.40 16 30 H 0.10 0.72 5.81 -51.93 -0.30 0.42 16 31 H 0.07 0.51 6.10 -51.93 -0.32 0.19 16 32 H 0.10 0.88 7.25 -51.93 -0.38 0.51 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.76 6.67 -51.93 -0.35 0.41 16 35 H 0.40 3.68 8.47 -40.82 -0.35 3.33 16 36 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 37 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 38 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.18 0.28 8.06 -52.49 -0.42 -0.15 16 40 H 0.18 0.29 8.06 -52.49 -0.42 -0.13 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -35.68 350.58 -7.39 -43.07 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -4.84 Total: -0.53 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -0.64 Total: 0.17 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.61 Total: -47.60 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.03 Total: -0.91 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.68 -7.39 -43.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100450375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.162 kcal (2) G-P(sol) polarization free energy of solvation -35.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.42 seconds