Wall clock time and date at job start Tue Mar 31 2020 16:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46904 * 109.46731 * 2 1 4 4 C 1.46900 * 110.99890 * 294.36281 * 3 2 1 5 5 C 1.52996 * 109.47534 * 287.87053 * 4 3 2 6 6 N 1.46498 * 109.47438 * 179.91097 * 5 4 3 7 7 C 1.34782 * 120.00245 * 180.02562 * 6 5 4 8 8 O 1.21275 * 119.99796 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99775 * 180.02562 * 7 6 5 10 10 S 1.80997 * 109.46701 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99962 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00216 * 0.02562 * 11 10 9 13 13 C 1.38810 * 120.00193 * 179.97438 * 11 10 9 14 14 N 1.31629 * 119.99833 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99595 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47598 * 89.99851 * 15 13 11 17 17 H 1.48506 * 109.46957 * 209.99833 * 15 13 11 18 18 H 1.48498 * 109.47252 * 329.99309 * 15 13 11 19 19 C 1.39109 * 111.00443 * 58.32184 * 3 2 1 20 20 N 1.32573 * 120.11022 * 236.04591 * 19 3 2 21 21 C 1.32305 * 119.94212 * 179.97438 * 20 19 3 22 22 C 1.38060 * 120.16812 * 0.02562 * 21 20 19 23 23 N 1.32351 * 120.22456 * 359.97438 * 22 21 20 24 24 C 1.32075 * 120.04837 * 359.97438 * 23 22 21 25 25 F 1.35102 * 120.08104 * 179.97438 * 24 23 22 26 26 H 1.08996 * 109.46896 * 305.38260 * 1 2 3 27 27 H 1.09000 * 109.47090 * 65.38436 * 1 2 3 28 28 H 1.09003 * 109.46773 * 185.38345 * 1 2 3 29 29 H 1.09001 * 109.46988 * 240.00469 * 2 1 3 30 30 H 1.08990 * 109.46916 * 119.99721 * 2 1 3 31 31 H 1.09003 * 109.47241 * 47.87572 * 4 3 2 32 32 H 1.09003 * 109.46866 * 167.87059 * 4 3 2 33 33 H 1.08996 * 109.47363 * 299.91394 * 5 4 3 34 34 H 1.09003 * 109.46909 * 59.91603 * 5 4 3 35 35 H 0.96999 * 119.99853 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.46839 * 299.99139 * 9 7 6 37 37 H 1.08995 * 109.47391 * 59.99738 * 9 7 6 38 38 H 0.97003 * 119.99639 * 180.02562 * 14 13 11 39 39 H 1.07998 * 119.91932 * 179.97438 * 21 20 19 40 40 H 1.07999 * 119.89473 * 179.72248 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6617 2.0699 -1.2493 5 6 2.5171 1.5231 -2.3939 6 7 2.1586 2.2046 -3.6402 7 6 2.7865 1.8834 -4.7887 8 8 3.6486 1.0304 -4.7904 9 6 2.4181 2.5849 -6.0706 10 16 3.4299 1.9379 -7.4246 11 6 2.8076 2.9040 -8.7603 12 1 2.0280 3.6302 -8.5841 13 6 3.3201 2.7323 -10.0389 14 7 2.8554 3.4544 -11.0365 15 14 4.6690 1.4767 -10.3435 16 1 4.0582 0.1658 -10.6811 17 1 5.5221 1.9303 -11.4712 18 1 5.4994 1.3356 -9.1205 19 6 1.5428 2.0825 1.1052 20 7 0.8646 3.2093 0.9386 21 6 0.4121 3.8696 1.9920 22 6 0.6450 3.3885 3.2650 23 7 1.3214 2.2643 3.4389 24 6 1.7761 1.5975 2.3935 25 9 2.4670 0.4501 2.5703 26 1 -0.3633 0.5950 0.8378 27 1 -0.3633 0.4281 -0.9343 28 1 -0.3633 -1.0232 0.0964 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8899 31 1 0.6080 1.8979 -1.4689 32 1 1.8404 3.1398 -1.1412 33 1 3.5707 1.6965 -2.1751 34 1 2.3395 0.4530 -2.5010 35 1 1.4693 2.8871 -3.6388 36 1 1.3643 2.4121 -6.2894 37 1 2.5963 3.6548 -5.9634 38 1 3.2133 3.3342 -11.9301 39 1 -0.1400 4.7878 1.8559 40 1 0.2775 3.9335 4.1219 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100450375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:31 Heat of formation + Delta-G solvation = -35.508713 kcal Electronic energy + Delta-G solvation = -24663.088613 eV Core-core repulsion = 20746.731850 eV Total energy + Delta-G solvation = -3916.356763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.23866 -42.35092 -40.71684 -39.41441 -35.97974 -35.15943 -34.66199 -32.28054 -32.19424 -30.63432 -28.76574 -27.82932 -25.97434 -25.28762 -24.26211 -21.97700 -21.85789 -19.90391 -19.35767 -19.14195 -18.48335 -17.86856 -17.75604 -17.28868 -17.08000 -16.84073 -16.44099 -16.01514 -15.65391 -15.48355 -15.29855 -15.00780 -14.90412 -14.68416 -14.60919 -14.33714 -14.19040 -13.62294 -13.34531 -13.24888 -13.02019 -12.97576 -12.81148 -12.62664 -12.39151 -12.31424 -11.98753 -11.86229 -11.16324 -11.07453 -10.99539 -10.52346 -10.40247 -10.17049 -9.35324 -8.98651 -8.50802 -6.21314 -0.45637 -0.14161 0.98733 1.32002 1.46380 1.53868 1.55873 1.84451 2.23911 2.26381 2.36356 2.60681 2.74241 2.87459 3.14149 3.14450 3.63319 3.80434 3.90247 3.93009 3.99238 4.07276 4.15602 4.25385 4.28466 4.39817 4.45065 4.48997 4.64233 4.71029 4.85295 4.87312 5.08291 5.12157 5.31016 5.43639 5.69892 5.71689 6.05057 6.12611 6.43948 6.50977 6.94546 7.17554 8.61424 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.031147 B = 0.002051 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.737239 B =13651.298470 C =14102.748564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.033 3.967 3 N -0.473 5.473 4 C 0.062 3.938 5 C 0.127 3.873 6 N -0.709 5.709 7 C 0.537 3.463 8 O -0.562 6.562 9 C -0.110 4.110 10 S -0.178 6.178 11 C -0.527 4.527 12 H 0.064 0.936 13 C 0.044 3.956 14 N -0.917 5.917 15 Si 0.914 3.086 16 H -0.262 1.262 17 H -0.260 1.260 18 H -0.237 1.237 19 C 0.256 3.744 20 N -0.467 5.467 21 C 0.083 3.917 22 C 0.057 3.943 23 N -0.472 5.472 24 C 0.220 3.780 25 F -0.108 7.108 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.418 0.582 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.277 0.723 39 H 0.222 0.778 40 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.554 -0.112 31.893 33.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.092 4.092 3 N -0.190 5.190 4 C -0.065 4.065 5 C 0.003 3.997 6 N -0.364 5.364 7 C 0.323 3.677 8 O -0.440 6.440 9 C -0.261 4.261 10 S 0.049 5.951 11 C -0.675 4.675 12 H 0.082 0.918 13 C -0.161 4.161 14 N -0.555 5.555 15 Si 0.736 3.264 16 H -0.187 1.187 17 H -0.184 1.184 18 H -0.161 1.161 19 C 0.020 3.980 20 N -0.186 5.186 21 C -0.078 4.078 22 C -0.103 4.103 23 N -0.192 5.192 24 C 0.060 3.940 25 F -0.087 7.087 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.255 0.745 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.238 0.762 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -7.551 -1.606 31.682 32.609 hybrid contribution -1.258 0.763 -0.612 1.594 sum -8.810 -0.843 31.070 32.306 Atomic orbital electron populations 1.22350 0.95581 1.03844 1.01912 1.22692 0.94748 0.85800 1.05969 1.59053 1.54530 1.04166 1.01243 1.22117 0.98906 0.99873 0.85602 1.21198 0.99419 0.96969 0.82117 1.45529 1.41638 1.42723 1.06503 1.19938 0.80863 0.82041 0.84898 1.90701 1.33001 1.33841 1.86441 1.23259 1.04739 1.04325 0.93799 1.84747 1.53076 1.54907 1.02384 1.22461 1.25377 1.25027 0.94640 0.91801 1.25568 0.98425 0.97313 0.94785 1.70016 1.43442 1.40809 1.01186 0.85870 0.80405 0.79672 0.80444 1.18690 1.18438 1.16104 1.20475 0.93759 0.93541 0.90266 1.68586 1.08270 1.06360 1.35427 1.24451 0.95274 1.00320 0.87757 1.24194 0.94885 0.90639 1.00603 1.67772 1.09484 1.09007 1.32913 1.18624 0.98693 0.86890 0.89786 1.91571 1.76096 1.45190 1.95877 0.94121 0.91345 0.89692 0.87668 0.88695 0.90503 0.88158 0.92092 0.91473 0.74451 0.86546 0.86656 0.91396 0.76178 0.76402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.35 71.98 0.67 -1.52 16 2 C 0.03 0.47 5.62 86.30 0.48 0.96 16 3 N -0.47 -8.01 4.66 -701.09 -3.27 -11.28 16 4 C 0.06 0.95 4.36 86.30 0.38 1.32 16 5 C 0.13 2.59 5.73 86.38 0.49 3.09 16 6 N -0.71 -15.74 5.56 -463.07 -2.57 -18.31 16 7 C 0.54 17.85 7.85 87.66 0.69 18.54 16 8 O -0.56 -23.68 15.86 -3.01 -0.05 -23.73 16 9 C -0.11 -4.01 6.16 71.24 0.44 -3.57 16 10 S -0.18 -8.89 18.55 -56.49 -1.05 -9.93 16 11 C -0.53 -30.43 10.04 67.96 0.68 -29.74 16 12 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 13 C 0.04 2.60 5.50 84.86 0.47 3.07 16 14 N -0.92 -55.56 13.97 21.65 0.30 -55.26 16 15 Si 0.91 44.92 27.74 68.60 1.90 46.82 16 16 H -0.26 -12.56 7.11 99.48 0.71 -11.86 16 17 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 19 C 0.26 4.32 4.83 133.09 0.64 4.96 16 20 N -0.47 -6.36 8.65 -192.43 -1.66 -8.02 16 21 C 0.08 0.57 11.21 84.58 0.95 1.52 16 22 C 0.06 0.44 11.21 84.57 0.95 1.39 16 23 N -0.47 -7.72 10.50 -195.79 -2.06 -9.78 16 24 C 0.22 4.11 8.09 84.99 0.69 4.80 16 25 F -0.11 -2.23 14.85 44.97 0.67 -1.57 16 26 H 0.04 0.57 6.95 -2.39 -0.02 0.55 16 27 H 0.07 0.82 6.56 -2.39 -0.02 0.80 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.11 1.45 6.52 -2.39 -0.02 1.43 16 30 H 0.09 1.44 5.81 -2.39 -0.01 1.42 16 31 H 0.08 1.01 6.10 -2.39 -0.01 1.00 16 32 H 0.10 1.56 7.25 -2.39 -0.02 1.54 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.43 6.67 -2.39 -0.02 1.42 16 35 H 0.42 6.42 8.47 -92.71 -0.79 5.64 16 36 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 37 H 0.12 3.83 8.14 -2.40 -0.02 3.81 16 38 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.22 -0.41 8.06 -2.91 -0.02 -0.43 16 40 H 0.22 -0.22 8.06 -2.91 -0.02 -0.24 16 Total: -1.00 -78.76 350.58 0.02 -78.75 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.27 Total: 7.49 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 7.53 Total: 4.81 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -9.26 Total: -102.64 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.67 Total: -1.57 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.90 Total: 46.82 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.93 kcal Total: -78.76 0.02 -78.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100450375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.239 kcal (2) G-P(sol) polarization free energy of solvation -78.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds