Wall clock time and date at job start Tue Mar 31 2020 15:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 N 1.46509 * 109.47332 * 184.99768 * 5 3 2 7 7 C 1.34777 * 119.99772 * 179.97438 * 6 5 3 8 8 O 1.21278 * 120.00049 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99495 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.46919 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99962 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99933 * 0.02562 * 11 10 9 13 13 C 1.38800 * 120.00260 * 179.97438 * 11 10 9 14 14 N 1.31630 * 119.99853 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 120.00312 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47201 * 60.00117 * 15 13 11 17 17 H 1.48503 * 109.47207 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47151 * 300.00335 * 15 13 11 19 19 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 20 20 C 1.38568 * 120.00129 * 275.00131 * 19 3 2 21 21 C 1.39463 * 120.51523 * 359.72027 * 20 19 3 22 22 C 1.38470 * 118.31255 * 179.80082 * 21 20 19 23 23 F 1.35098 * 120.43082 * 180.22303 * 22 21 20 24 24 N 1.32793 * 119.13840 * 0.47597 * 22 21 20 25 25 C 1.31758 * 120.95987 * 359.74214 * 24 22 21 26 26 N 1.31761 * 121.86179 * 0.02562 * 25 24 22 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.08996 * 109.47701 * 305.00165 * 5 3 2 33 33 H 1.09003 * 109.46986 * 65.00616 * 5 3 2 34 34 H 0.96996 * 119.99905 * 0.02562 * 6 5 3 35 35 H 1.09005 * 109.47311 * 300.00174 * 9 7 6 36 36 H 1.08999 * 109.47511 * 60.00249 * 9 7 6 37 37 H 0.96998 * 120.00396 * 179.97438 * 14 13 11 38 38 H 0.97001 * 119.99703 * 95.00546 * 19 3 2 39 39 H 1.07994 * 120.84401 * 0.02562 * 21 20 19 40 40 H 1.08004 * 119.06873 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3859 3.0628 -0.0858 8 8 6.1635 2.1481 -0.2572 9 6 5.8984 4.4745 0.0380 10 16 7.7023 4.4767 -0.1109 11 6 8.0217 6.2005 0.0648 12 1 7.2030 6.8890 0.2135 13 6 9.3256 6.6736 0.0130 14 7 10.3234 5.8344 -0.1678 15 14 9.6643 8.5010 0.1999 16 1 9.1669 8.9642 1.5202 17 1 11.1262 8.7455 0.1076 18 1 8.9691 9.2463 -0.8802 19 7 1.6525 2.0974 1.2518 20 6 0.4009 2.6803 1.3702 21 6 -0.4960 2.6548 0.3026 22 6 -1.7359 3.2475 0.4722 23 9 -2.6393 3.2437 -0.5323 24 7 -2.0235 3.8242 1.6333 25 6 -1.1503 3.8340 2.6199 26 7 0.0384 3.2778 2.5023 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.9955 0.8310 0.6659 33 1 3.8499 1.0377 -1.0960 34 1 3.4412 3.5482 0.1315 35 1 5.4681 5.0880 -0.7537 36 1 5.6131 4.8810 1.0082 37 1 11.2346 6.1650 -0.2044 38 1 2.2720 2.1231 1.9978 39 1 -0.2316 2.1816 -0.6315 40 1 -1.4165 4.3113 3.5515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102986666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:13 Heat of formation + Delta-G solvation = -24.491707 kcal Electronic energy + Delta-G solvation = -24714.169134 eV Core-core repulsion = 20798.290103 eV Total energy + Delta-G solvation = -3915.879030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.51119 -41.44040 -39.56671 -38.17845 -34.72218 -33.89801 -32.46337 -32.38590 -31.52444 -29.92748 -27.88846 -25.52862 -25.13867 -23.94110 -23.60936 -21.51423 -20.41254 -19.22783 -18.63504 -17.88453 -16.93945 -16.69563 -16.47894 -16.31633 -16.06428 -15.58297 -15.21752 -15.15454 -14.84314 -14.82748 -14.14014 -14.03621 -13.93299 -13.90418 -13.45802 -13.06374 -12.85926 -12.60760 -12.17770 -11.91467 -11.70268 -11.63709 -11.47137 -11.08333 -11.06205 -10.90720 -10.79755 -10.18163 -9.86812 -9.85767 -9.54531 -9.12565 -9.06351 -8.72899 -8.29787 -6.54803 -6.25065 -3.96303 0.46052 0.79258 2.32390 2.91028 2.97038 3.01259 3.21527 3.24669 3.27553 3.33281 3.58963 3.78597 4.06125 4.17127 4.17981 4.33286 4.42661 4.66763 4.69317 4.84472 4.91757 5.07451 5.10199 5.12520 5.18643 5.27501 5.43283 5.47589 5.54329 5.65650 5.75696 5.80808 5.83535 6.07355 6.13446 6.39617 6.60629 6.96626 7.51620 7.56292 7.70052 8.31591 8.46469 9.20294 10.82316 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.016223 B = 0.002414 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.487746 B =11598.029985 C =12773.605857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.138 4.138 3 C 0.137 3.863 4 H 0.094 0.906 5 C 0.114 3.886 6 N -0.741 5.741 7 C 0.534 3.466 8 O -0.514 6.514 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.274 1.274 19 N -0.696 5.696 20 C 0.466 3.534 21 C -0.320 4.320 22 C 0.378 3.622 23 F -0.103 7.103 24 N -0.593 5.593 25 C 0.376 3.624 26 N -0.581 5.581 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.399 0.601 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.269 0.731 38 H 0.416 0.584 39 H 0.161 0.839 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.636 -9.673 1.778 26.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.177 4.177 3 C 0.031 3.969 4 H 0.112 0.888 5 C -0.011 4.011 6 N -0.397 5.397 7 C 0.320 3.680 8 O -0.388 6.388 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.328 5.328 20 C 0.221 3.779 21 C -0.349 4.349 22 C 0.221 3.779 23 F -0.082 7.082 24 N -0.319 5.319 25 C 0.086 3.914 26 N -0.306 5.306 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.233 0.767 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.254 0.746 39 H 0.178 0.822 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -23.317 -10.929 2.027 25.831 hybrid contribution -0.791 2.213 -0.287 2.368 sum -24.109 -8.716 1.740 25.695 Atomic orbital electron populations 1.22135 0.95223 1.02234 1.01882 1.21995 0.96677 0.95113 1.03899 1.21543 0.94864 0.94218 0.86249 0.88804 1.21562 0.90520 0.85152 1.03829 1.45992 1.07987 1.08637 1.77037 1.20331 0.81230 0.91209 0.75252 1.90715 1.55382 1.46129 1.46586 1.23534 1.06965 0.95024 1.04949 1.85379 0.91811 1.11044 1.94972 1.22822 0.95452 0.92362 1.57886 0.90970 1.24990 0.95045 0.99004 0.94492 1.70001 0.99547 1.34679 1.46065 0.86219 0.77399 0.82986 0.78879 1.19903 1.20777 1.19923 1.44709 1.12888 1.58011 1.17187 1.18246 0.85964 0.85652 0.87988 1.22111 0.95520 1.13621 1.03675 1.17996 0.84757 0.90970 0.84202 1.91660 1.66661 1.93595 1.56291 1.67856 1.38349 1.24475 1.01183 1.24551 0.82277 0.88815 0.95729 1.68048 1.20834 1.17124 1.24618 0.92172 0.92462 0.92266 0.90641 0.89785 0.90554 0.89460 0.76664 0.89226 0.89187 0.92083 0.74603 0.82214 0.77653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 8.23 37.16 0.31 -0.53 16 2 C -0.14 -0.68 5.61 -26.74 -0.15 -0.83 16 3 C 0.14 0.79 2.37 -67.93 -0.16 0.63 16 4 H 0.09 0.49 6.50 -51.93 -0.34 0.16 16 5 C 0.11 0.98 5.23 -4.04 -0.02 0.96 16 6 N -0.74 -8.39 5.39 -60.29 -0.32 -8.71 16 7 C 0.53 9.16 7.85 -10.98 -0.09 9.08 16 8 O -0.51 -10.88 15.86 5.56 0.09 -10.79 16 9 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 10 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 11 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 15 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 N -0.70 -4.69 4.61 -53.81 -0.25 -4.94 16 20 C 0.47 3.80 6.52 -154.77 -1.01 2.79 16 21 C -0.32 -2.47 6.79 -39.04 -0.27 -2.74 16 22 C 0.38 3.57 8.50 -17.05 -0.14 3.43 16 23 F -0.10 -0.99 17.30 2.25 0.04 -0.95 16 24 N -0.59 -5.90 10.45 -14.98 -0.16 -6.05 16 25 C 0.38 3.11 12.28 -92.21 -1.13 1.98 16 26 N -0.58 -5.29 10.47 -13.84 -0.14 -5.43 16 27 H 0.06 0.28 6.35 -51.93 -0.33 -0.05 16 28 H 0.06 0.39 5.40 -51.93 -0.28 0.11 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 3.79 8.14 -40.82 -0.33 3.46 16 35 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 36 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.42 2.97 8.73 -40.82 -0.36 2.62 16 39 H 0.16 0.96 4.15 -52.49 -0.22 0.74 16 40 H 0.21 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -34.65 353.71 -8.94 -43.60 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.78 Total: 1.51 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.24 Total: -0.81 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.14 Total: -50.32 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.65 -8.94 -43.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102986666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.104 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds