Wall clock time and date at job start Tue Mar 31 2020 15:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 N 1.46509 * 109.47332 * 184.99768 * 5 3 2 7 7 C 1.34777 * 119.99772 * 179.97438 * 6 5 3 8 8 O 1.21278 * 120.00049 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99495 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.46919 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99962 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99933 * 0.02562 * 11 10 9 13 13 C 1.38800 * 120.00260 * 179.97438 * 11 10 9 14 14 N 1.31630 * 119.99853 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 120.00312 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47201 * 60.00117 * 15 13 11 17 17 H 1.48503 * 109.47207 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47151 * 300.00335 * 15 13 11 19 19 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 20 20 C 1.38568 * 120.00129 * 275.00131 * 19 3 2 21 21 C 1.39463 * 120.51523 * 359.72027 * 20 19 3 22 22 C 1.38470 * 118.31255 * 179.80082 * 21 20 19 23 23 F 1.35098 * 120.43082 * 180.22303 * 22 21 20 24 24 N 1.32793 * 119.13840 * 0.47597 * 22 21 20 25 25 C 1.31758 * 120.95987 * 359.74214 * 24 22 21 26 26 N 1.31761 * 121.86179 * 0.02562 * 25 24 22 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.08996 * 109.47701 * 305.00165 * 5 3 2 33 33 H 1.09003 * 109.46986 * 65.00616 * 5 3 2 34 34 H 0.96996 * 119.99905 * 0.02562 * 6 5 3 35 35 H 1.09005 * 109.47311 * 300.00174 * 9 7 6 36 36 H 1.08999 * 109.47511 * 60.00249 * 9 7 6 37 37 H 0.96998 * 120.00396 * 179.97438 * 14 13 11 38 38 H 0.97001 * 119.99703 * 95.00546 * 19 3 2 39 39 H 1.07994 * 120.84401 * 0.02562 * 21 20 19 40 40 H 1.08004 * 119.06873 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3859 3.0628 -0.0858 8 8 6.1635 2.1481 -0.2572 9 6 5.8984 4.4745 0.0380 10 16 7.7023 4.4767 -0.1109 11 6 8.0217 6.2005 0.0648 12 1 7.2030 6.8890 0.2135 13 6 9.3256 6.6736 0.0130 14 7 10.3234 5.8344 -0.1678 15 14 9.6643 8.5010 0.1999 16 1 9.1669 8.9642 1.5202 17 1 11.1262 8.7455 0.1076 18 1 8.9691 9.2463 -0.8802 19 7 1.6525 2.0974 1.2518 20 6 0.4009 2.6803 1.3702 21 6 -0.4960 2.6548 0.3026 22 6 -1.7359 3.2475 0.4722 23 9 -2.6393 3.2437 -0.5323 24 7 -2.0235 3.8242 1.6333 25 6 -1.1503 3.8340 2.6199 26 7 0.0384 3.2778 2.5023 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.9955 0.8310 0.6659 33 1 3.8499 1.0377 -1.0960 34 1 3.4412 3.5482 0.1315 35 1 5.4681 5.0880 -0.7537 36 1 5.6131 4.8810 1.0082 37 1 11.2346 6.1650 -0.2044 38 1 2.2720 2.1231 1.9978 39 1 -0.2316 2.1816 -0.6315 40 1 -1.4165 4.3113 3.5515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102986666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:11 Heat of formation + Delta-G solvation = -48.872791 kcal Electronic energy + Delta-G solvation = -24715.226377 eV Core-core repulsion = 20798.290103 eV Total energy + Delta-G solvation = -3916.936273 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -50.20064 -42.06455 -40.72400 -38.97796 -35.65310 -34.64534 -34.58374 -32.98282 -32.22921 -31.14305 -28.80891 -27.64414 -25.74990 -24.66360 -24.21828 -22.13762 -21.58479 -19.99371 -19.73968 -19.22886 -17.83526 -17.54459 -17.41673 -17.28613 -16.88375 -16.77655 -16.48162 -16.18293 -15.95215 -15.67318 -15.47105 -14.83813 -14.68066 -14.61888 -14.54740 -14.42708 -14.02888 -13.54158 -13.19870 -13.17797 -12.87439 -12.68789 -12.63200 -12.24689 -12.17625 -12.05531 -11.74361 -11.44182 -11.13721 -10.99349 -10.80333 -10.52110 -10.29324 -10.17817 -9.30884 -8.66924 -8.35470 -6.13222 -0.16428 0.15348 1.25976 1.43121 1.45815 1.55343 1.58807 1.75230 2.23210 2.27969 2.38429 2.70329 2.98707 3.22004 3.30650 3.44821 3.59298 3.80190 3.89388 4.00802 4.07952 4.13926 4.27569 4.36340 4.48667 4.50246 4.58639 4.62037 4.71365 4.83726 5.02829 5.13669 5.27073 5.34847 5.36375 5.40910 5.55006 6.00154 6.18718 6.36433 6.41296 7.06064 7.08204 7.19509 8.73380 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.016223 B = 0.002414 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.487746 B =11598.029985 C =12773.605857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.133 4.133 3 C 0.148 3.852 4 H 0.109 0.891 5 C 0.114 3.886 6 N -0.713 5.713 7 C 0.537 3.463 8 O -0.560 6.560 9 C -0.133 4.133 10 S -0.147 6.147 11 C -0.549 4.549 12 H 0.081 0.919 13 C 0.015 3.985 14 N -0.910 5.910 15 Si 0.996 3.004 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.263 1.263 19 N -0.691 5.691 20 C 0.462 3.538 21 C -0.309 4.309 22 C 0.361 3.639 23 F -0.109 7.109 24 N -0.615 5.615 25 C 0.372 3.628 26 N -0.597 5.597 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.412 0.588 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.271 0.729 38 H 0.415 0.585 39 H 0.178 0.822 40 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.294 -8.942 1.779 27.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.172 4.172 3 C 0.043 3.957 4 H 0.126 0.874 5 C -0.010 4.010 6 N -0.368 5.368 7 C 0.323 3.677 8 O -0.438 6.438 9 C -0.284 4.284 10 S 0.081 5.919 11 C -0.696 4.696 12 H 0.099 0.901 13 C -0.190 4.190 14 N -0.547 5.547 15 Si 0.818 3.182 16 H -0.187 1.187 17 H -0.204 1.204 18 H -0.187 1.187 19 N -0.323 5.323 20 C 0.217 3.783 21 C -0.338 4.338 22 C 0.204 3.796 23 F -0.088 7.088 24 N -0.341 5.341 25 C 0.084 3.916 26 N -0.322 5.322 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.249 0.751 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.195 0.805 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -25.041 -10.203 2.029 27.116 hybrid contribution -0.400 1.893 -0.266 1.953 sum -25.442 -8.310 1.762 26.822 Atomic orbital electron populations 1.22097 0.95226 1.02397 1.01485 1.21966 0.96446 0.94254 1.04518 1.21518 0.92721 0.95169 0.86313 0.87355 1.21742 0.92226 0.83057 1.03987 1.45699 1.05969 1.10535 1.74572 1.19937 0.82776 0.89639 0.75352 1.90707 1.56975 1.46878 1.49201 1.23385 1.01133 0.97377 1.06485 1.85513 0.99310 1.11770 1.95346 1.23171 0.96126 0.92651 1.57694 0.90078 1.26098 0.94741 1.04364 0.93830 1.70163 1.00040 1.37174 1.47293 0.85033 0.77390 0.76345 0.79429 1.18726 1.20356 1.18721 1.44735 1.12449 1.57686 1.17406 1.18363 0.86338 0.85616 0.87984 1.22197 0.94625 1.12816 1.04164 1.18219 0.85364 0.91780 0.84235 1.91642 1.66945 1.93728 1.56474 1.67868 1.39195 1.25282 1.01783 1.25111 0.81823 0.88427 0.96264 1.68092 1.21268 1.17701 1.25151 0.91365 0.93949 0.91924 0.90913 0.88388 0.90849 0.89114 0.75134 0.87489 0.87526 0.91956 0.74711 0.80451 0.75038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.23 71.98 0.59 -0.67 16 2 C -0.13 -0.95 5.61 30.59 0.17 -0.78 16 3 C 0.15 1.30 2.37 44.99 0.11 1.41 16 4 H 0.11 0.73 6.50 -2.39 -0.02 0.72 16 5 C 0.11 1.69 5.23 86.38 0.45 2.14 16 6 N -0.71 -14.55 5.39 -463.05 -2.50 -17.04 16 7 C 0.54 17.88 7.85 87.66 0.69 18.57 16 8 O -0.56 -23.76 15.86 -3.02 -0.05 -23.80 16 9 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 10 S -0.15 -7.93 20.57 -56.49 -1.16 -9.10 16 11 C -0.55 -30.94 9.50 67.95 0.65 -30.30 16 12 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 13 C 0.01 0.82 5.49 84.86 0.47 1.29 16 14 N -0.91 -55.35 13.22 21.65 0.29 -55.07 16 15 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 16 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 17 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 19 N -0.69 -7.72 4.61 -324.16 -1.49 -9.21 16 20 C 0.46 6.63 6.52 133.10 0.87 7.50 16 21 C -0.31 -4.16 6.79 22.62 0.15 -4.01 16 22 C 0.36 6.39 8.50 84.60 0.72 7.11 16 23 F -0.11 -2.00 17.30 44.97 0.78 -1.22 16 24 N -0.62 -11.63 10.45 -201.32 -2.10 -13.74 16 25 C 0.37 5.68 12.28 180.91 2.22 7.90 16 26 N -0.60 -9.92 10.47 -197.70 -2.07 -11.99 16 27 H 0.07 0.45 6.35 -2.39 -0.02 0.43 16 28 H 0.04 0.49 5.40 -2.39 -0.01 0.47 16 29 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.41 6.58 8.14 -92.71 -0.75 5.82 16 35 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 36 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.42 5.05 8.73 -92.71 -0.81 4.24 16 39 H 0.18 1.61 4.15 -2.91 -0.01 1.60 16 40 H 0.23 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -77.07 353.71 0.79 -76.27 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -0.45 Total: 14.07 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 7.52 Total: 5.60 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -7.88 Total: -107.04 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.80 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.78 Total: -1.22 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.10 kcal Total: -77.07 0.79 -76.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102986666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.402 kcal (2) G-P(sol) polarization free energy of solvation -77.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds