Wall clock time and date at job start Tue Mar 31 2020 15:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47038 * 2 1 4 4 H 1.08998 * 109.46913 * 305.35121 * 3 2 1 5 5 C 1.52998 * 109.47342 * 185.34779 * 3 2 1 6 6 N 1.46496 * 109.47143 * 184.99875 * 5 3 2 7 7 C 1.34781 * 120.00063 * 180.02562 * 6 5 3 8 8 O 1.21285 * 119.99722 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00278 * 179.97438 * 7 6 5 10 10 S 1.80995 * 109.47054 * 179.97438 * 9 7 6 11 11 C 1.76199 * 99.99934 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00276 * 359.97438 * 11 10 9 13 13 C 1.38805 * 120.00151 * 180.02562 * 11 10 9 14 14 N 1.31630 * 120.00157 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 119.99899 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47146 * 89.99940 * 15 13 11 17 17 H 1.48500 * 109.47087 * 210.00244 * 15 13 11 18 18 H 1.48506 * 109.47009 * 330.00018 * 15 13 11 19 19 N 1.46503 * 109.47240 * 65.34456 * 3 2 1 20 20 C 1.39147 * 120.00452 * 244.96633 * 19 3 2 21 21 C 1.39210 * 120.06232 * 353.95192 * 20 19 3 22 22 N 1.32008 * 119.93345 * 180.02562 * 21 20 19 23 23 C 1.32393 * 120.05542 * 359.97438 * 22 21 20 24 24 F 1.35106 * 119.93904 * 180.02562 * 23 22 21 25 25 C 1.38473 * 120.12496 * 0.02562 * 23 22 21 26 26 N 1.32209 * 120.06457 * 359.72268 * 25 23 22 27 27 H 1.08998 * 109.47182 * 174.96067 * 1 2 3 28 28 H 1.08995 * 109.47646 * 294.96419 * 1 2 3 29 29 H 1.09000 * 109.47165 * 54.96685 * 1 2 3 30 30 H 1.08999 * 109.47084 * 119.99557 * 2 1 3 31 31 H 1.08993 * 109.47366 * 240.00054 * 2 1 3 32 32 H 1.09005 * 109.47370 * 305.00252 * 5 3 2 33 33 H 1.09004 * 109.46821 * 64.99808 * 5 3 2 34 34 H 0.96998 * 120.00452 * 0.02562 * 6 5 3 35 35 H 1.09003 * 109.46961 * 299.99701 * 9 7 6 36 36 H 1.09004 * 109.47204 * 59.99868 * 9 7 6 37 37 H 0.96992 * 120.00052 * 179.97438 * 14 13 11 38 38 H 0.97002 * 119.99589 * 64.96522 * 19 3 2 39 39 H 1.08009 * 120.03044 * 359.97438 * 21 20 19 40 40 H 1.08005 * 119.96495 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6005 1.9832 -0.8382 5 6 3.5641 1.4447 -0.1344 6 7 4.0629 2.8169 -0.0148 7 6 5.3850 3.0634 -0.1027 8 8 6.1618 2.1491 -0.2805 9 6 5.8981 4.4751 0.0198 10 16 7.7011 4.4775 -0.1391 11 6 8.0215 6.2010 0.0383 12 1 7.2037 6.8893 0.1922 13 6 9.3250 6.6743 -0.0209 14 7 9.5644 7.9619 0.1111 15 14 10.7396 5.4840 -0.2879 16 1 10.9918 5.3334 -1.7435 17 1 11.9605 6.0096 0.3743 18 1 10.3911 4.1627 0.2935 19 7 1.6595 2.0950 1.2553 20 6 0.7704 3.1653 1.2416 21 6 0.3393 3.6983 0.0300 22 7 -0.5039 4.7139 0.0199 23 6 -0.9397 5.2252 1.1608 24 9 -1.8030 6.2644 1.1477 25 6 -0.5124 4.6969 2.3673 26 7 0.3281 3.6765 2.3830 27 1 -0.3633 -1.0237 -0.0903 28 1 -0.3634 0.4337 0.9316 29 1 -0.3633 0.5899 -0.8415 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.9992 0.8299 0.6535 33 1 3.8435 1.0400 -1.1072 34 1 3.4417 3.5482 0.1278 35 1 5.4628 5.0896 -0.7682 36 1 5.6189 4.8800 0.9925 37 1 10.4753 8.2926 0.0702 38 1 2.0275 1.7809 2.0961 39 1 0.6949 3.2816 -0.9009 40 1 -0.8699 5.1157 3.2964 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102987054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:29 Heat of formation + Delta-G solvation = -25.807811 kcal Electronic energy + Delta-G solvation = -24796.542952 eV Core-core repulsion = 20880.606851 eV Total energy + Delta-G solvation = -3915.936101 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 5.68 seconds Orbital eigenvalues (eV) -49.22264 -41.51655 -39.59367 -38.04462 -34.96475 -34.14272 -33.29012 -32.46157 -30.53703 -29.58699 -27.89195 -25.69358 -25.61827 -24.05050 -23.51807 -21.65007 -20.47134 -18.88433 -18.45874 -18.05168 -17.89293 -16.67383 -16.46576 -16.37254 -16.03770 -15.29066 -15.21390 -15.02456 -14.94555 -14.66294 -14.19724 -13.94287 -13.89833 -13.86613 -13.54186 -13.09837 -12.82062 -12.64190 -12.28270 -12.08524 -11.98836 -11.72450 -11.67816 -11.40548 -11.29417 -11.03136 -10.75935 -10.60108 -9.88718 -9.68259 -9.63339 -9.14207 -9.01955 -8.54334 -8.31043 -6.95264 -6.30965 -4.03354 0.33087 0.67476 2.31671 2.69341 2.87694 3.10588 3.16374 3.22568 3.31219 3.47821 3.58121 3.75930 3.89252 4.12114 4.28394 4.30634 4.37710 4.46883 4.68691 4.69876 4.78288 4.93001 4.97379 5.07942 5.18725 5.19484 5.26097 5.45988 5.50077 5.54628 5.70594 5.74174 5.83115 5.96204 6.13954 6.35858 6.81827 6.85537 7.32546 7.45025 7.92047 8.37274 8.39874 9.14886 10.78360 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.002845 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.350323 B = 9840.416070 C =11585.192736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.135 3.865 4 H 0.100 0.900 5 C 0.109 3.891 6 N -0.735 5.735 7 C 0.532 3.468 8 O -0.517 6.517 9 C -0.125 4.125 10 S -0.140 6.140 11 C -0.523 4.523 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.701 5.701 20 C 0.352 3.648 21 C 0.023 3.977 22 N -0.426 5.426 23 C 0.184 3.816 24 F -0.109 7.109 25 C 0.100 3.900 26 N -0.476 5.476 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.397 0.603 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.271 0.729 38 H 0.413 0.587 39 H 0.176 0.824 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.551 -14.266 1.909 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C 0.030 3.970 4 H 0.118 0.882 5 C -0.016 4.016 6 N -0.390 5.390 7 C 0.318 3.682 8 O -0.391 6.391 9 C -0.276 4.276 10 S 0.087 5.913 11 C -0.670 4.670 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.516 5.516 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.334 5.334 20 C 0.113 3.887 21 C -0.146 4.146 22 N -0.145 5.145 23 C 0.027 3.973 24 F -0.088 7.088 25 C -0.063 4.063 26 N -0.198 5.198 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.231 0.769 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.250 0.750 39 H 0.192 0.808 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -22.118 -15.677 1.455 27.150 hybrid contribution -0.543 1.399 0.491 1.579 sum -22.661 -14.278 1.946 26.854 Atomic orbital electron populations 1.21736 0.94972 1.02098 1.02041 1.21889 0.96806 0.94677 1.03827 1.21605 0.94335 0.94612 0.86464 0.88197 1.21704 0.91671 0.84792 1.03462 1.45874 1.07802 1.08859 1.76480 1.20278 0.81446 0.91037 0.75408 1.90708 1.55448 1.46110 1.46878 1.23278 1.03152 0.95426 1.05708 1.84756 0.97844 1.13060 1.95681 1.22314 0.97329 0.89824 1.57552 0.89410 1.24719 0.98265 0.95053 0.93265 1.69936 1.21484 1.12552 1.47655 0.86730 0.82103 0.83069 0.79909 1.19176 1.19908 1.15934 1.44562 1.46458 1.32174 1.10235 1.19382 0.89913 0.88934 0.90513 1.23009 0.98528 0.94996 0.98087 1.67582 1.08597 1.08707 1.29577 1.18801 0.96208 0.91070 0.91181 1.91635 1.66314 1.54022 1.96840 1.23324 0.93002 0.91832 0.98098 1.68048 1.12524 1.11428 1.27813 0.92214 0.92700 0.92609 0.90714 0.89749 0.90753 0.89753 0.76864 0.88525 0.88587 0.91898 0.75014 0.80780 0.80136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.74 37.16 0.36 -0.32 16 2 C -0.13 -0.53 5.61 -26.73 -0.15 -0.68 16 3 C 0.14 0.68 2.43 -67.93 -0.16 0.52 16 4 H 0.10 0.42 5.30 -51.93 -0.28 0.15 16 5 C 0.11 0.88 5.37 -4.04 -0.02 0.85 16 6 N -0.74 -8.14 5.39 -60.29 -0.32 -8.46 16 7 C 0.53 8.86 7.85 -10.99 -0.09 8.77 16 8 O -0.52 -10.47 15.86 5.55 0.09 -10.39 16 9 C -0.13 -2.37 6.16 36.00 0.22 -2.15 16 10 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 11 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 12 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 13 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 14 N -0.88 -26.59 13.97 55.49 0.78 -25.81 16 15 Si 0.86 21.67 27.74 -169.99 -4.71 16.95 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 19 N -0.70 -4.23 4.09 -53.81 -0.22 -4.45 16 20 C 0.35 2.78 7.66 -154.63 -1.18 1.60 16 21 C 0.02 0.19 10.49 -17.11 -0.18 0.01 16 22 N -0.43 -4.49 10.50 -13.24 -0.14 -4.63 16 23 C 0.18 1.84 8.43 -17.22 -0.15 1.69 16 24 F -0.11 -1.13 17.29 2.25 0.04 -1.09 16 25 C 0.10 0.83 11.20 -17.30 -0.19 0.64 16 26 N -0.48 -4.29 10.53 -12.17 -0.13 -4.42 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.31 7.90 -51.93 -0.41 -0.10 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.40 3.82 8.14 -40.82 -0.33 3.48 16 35 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 36 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 37 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.41 2.52 8.96 -40.82 -0.37 2.15 16 39 H 0.18 1.01 5.74 -52.48 -0.30 0.71 16 40 H 0.18 0.95 8.06 -52.48 -0.42 0.52 16 LS Contribution 360.91 15.07 5.44 5.44 Total: -1.00 -35.04 360.91 -7.57 -42.61 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.07 Total: 0.84 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -1.33 Total: -1.11 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.04 Total: -47.77 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.04 -7.57 -42.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102987054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.806 kcal (2) G-P(sol) polarization free energy of solvation -35.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.68 seconds