Wall clock time and date at job start Tue Mar 31 2020 15:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47038 * 2 1 4 4 H 1.08998 * 109.46913 * 305.35121 * 3 2 1 5 5 C 1.52998 * 109.47342 * 185.34779 * 3 2 1 6 6 N 1.46496 * 109.47143 * 184.99875 * 5 3 2 7 7 C 1.34781 * 120.00063 * 180.02562 * 6 5 3 8 8 O 1.21285 * 119.99722 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00278 * 179.97438 * 7 6 5 10 10 S 1.80995 * 109.47054 * 179.97438 * 9 7 6 11 11 C 1.76199 * 99.99934 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00276 * 359.97438 * 11 10 9 13 13 C 1.38805 * 120.00151 * 180.02562 * 11 10 9 14 14 N 1.31630 * 120.00157 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 119.99899 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47146 * 89.99940 * 15 13 11 17 17 H 1.48500 * 109.47087 * 210.00244 * 15 13 11 18 18 H 1.48506 * 109.47009 * 330.00018 * 15 13 11 19 19 N 1.46503 * 109.47240 * 65.34456 * 3 2 1 20 20 C 1.39147 * 120.00452 * 244.96633 * 19 3 2 21 21 C 1.39210 * 120.06232 * 353.95192 * 20 19 3 22 22 N 1.32008 * 119.93345 * 180.02562 * 21 20 19 23 23 C 1.32393 * 120.05542 * 359.97438 * 22 21 20 24 24 F 1.35106 * 119.93904 * 180.02562 * 23 22 21 25 25 C 1.38473 * 120.12496 * 0.02562 * 23 22 21 26 26 N 1.32209 * 120.06457 * 359.72268 * 25 23 22 27 27 H 1.08998 * 109.47182 * 174.96067 * 1 2 3 28 28 H 1.08995 * 109.47646 * 294.96419 * 1 2 3 29 29 H 1.09000 * 109.47165 * 54.96685 * 1 2 3 30 30 H 1.08999 * 109.47084 * 119.99557 * 2 1 3 31 31 H 1.08993 * 109.47366 * 240.00054 * 2 1 3 32 32 H 1.09005 * 109.47370 * 305.00252 * 5 3 2 33 33 H 1.09004 * 109.46821 * 64.99808 * 5 3 2 34 34 H 0.96998 * 120.00452 * 0.02562 * 6 5 3 35 35 H 1.09003 * 109.46961 * 299.99701 * 9 7 6 36 36 H 1.09004 * 109.47204 * 59.99868 * 9 7 6 37 37 H 0.96992 * 120.00052 * 179.97438 * 14 13 11 38 38 H 0.97002 * 119.99589 * 64.96522 * 19 3 2 39 39 H 1.08009 * 120.03044 * 359.97438 * 21 20 19 40 40 H 1.08005 * 119.96495 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6005 1.9832 -0.8382 5 6 3.5641 1.4447 -0.1344 6 7 4.0629 2.8169 -0.0148 7 6 5.3850 3.0634 -0.1027 8 8 6.1618 2.1491 -0.2805 9 6 5.8981 4.4751 0.0198 10 16 7.7011 4.4775 -0.1391 11 6 8.0215 6.2010 0.0383 12 1 7.2037 6.8893 0.1922 13 6 9.3250 6.6743 -0.0209 14 7 9.5644 7.9619 0.1111 15 14 10.7396 5.4840 -0.2879 16 1 10.9918 5.3334 -1.7435 17 1 11.9605 6.0096 0.3743 18 1 10.3911 4.1627 0.2935 19 7 1.6595 2.0950 1.2553 20 6 0.7704 3.1653 1.2416 21 6 0.3393 3.6983 0.0300 22 7 -0.5039 4.7139 0.0199 23 6 -0.9397 5.2252 1.1608 24 9 -1.8030 6.2644 1.1477 25 6 -0.5124 4.6969 2.3673 26 7 0.3281 3.6765 2.3830 27 1 -0.3633 -1.0237 -0.0903 28 1 -0.3634 0.4337 0.9316 29 1 -0.3633 0.5899 -0.8415 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.9992 0.8299 0.6535 33 1 3.8435 1.0400 -1.1072 34 1 3.4417 3.5482 0.1278 35 1 5.4628 5.0896 -0.7682 36 1 5.6189 4.8800 0.9925 37 1 10.4753 8.2926 0.0702 38 1 2.0275 1.7809 2.0961 39 1 0.6949 3.2816 -0.9009 40 1 -0.8699 5.1157 3.2964 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102987054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:26 Heat of formation + Delta-G solvation = -51.735037 kcal Electronic energy + Delta-G solvation = -24797.667241 eV Core-core repulsion = 20880.606851 eV Total energy + Delta-G solvation = -3917.060390 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -49.95215 -42.15532 -40.73800 -38.78694 -35.69124 -35.10707 -34.68838 -33.80096 -31.60259 -30.41566 -28.73202 -27.85583 -26.30943 -24.75133 -24.08667 -22.22415 -21.61554 -19.96063 -19.46801 -19.10988 -18.62387 -17.92318 -17.43343 -17.27296 -17.07677 -16.81654 -16.37060 -15.92211 -15.64857 -15.58935 -15.26667 -14.96384 -14.77567 -14.71101 -14.61345 -14.56456 -13.96374 -13.49827 -13.35898 -13.05078 -12.96633 -12.78538 -12.76571 -12.67176 -12.33917 -12.11607 -11.87838 -11.76354 -11.32695 -11.18463 -11.00606 -10.56848 -10.33688 -10.16979 -9.01256 -8.90440 -8.53112 -6.24382 -0.29340 0.00087 0.97395 1.31078 1.45552 1.53764 1.54878 1.76228 2.19692 2.24836 2.46377 2.52231 2.68956 2.85179 3.15830 3.34043 3.56527 3.69451 3.77940 3.92737 4.03527 4.10365 4.17397 4.40279 4.42833 4.43664 4.56348 4.64118 4.78198 4.87802 5.08775 5.18077 5.24386 5.35294 5.41238 5.60409 5.68639 6.09440 6.20750 6.26280 6.36072 6.72284 6.91659 7.13760 8.59604 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.002845 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.350323 B = 9840.416070 C =11585.192736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.145 3.855 4 H 0.115 0.885 5 C 0.107 3.893 6 N -0.711 5.711 7 C 0.538 3.462 8 O -0.556 6.556 9 C -0.116 4.116 10 S -0.167 6.167 11 C -0.533 4.533 12 H 0.058 0.942 13 C 0.044 3.956 14 N -0.919 5.919 15 Si 0.917 3.083 16 H -0.261 1.261 17 H -0.260 1.260 18 H -0.234 1.234 19 N -0.693 5.693 20 C 0.355 3.645 21 C 0.023 3.977 22 N -0.452 5.452 23 C 0.160 3.840 24 F -0.118 7.118 25 C 0.107 3.893 26 N -0.494 5.494 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.408 0.592 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.277 0.723 38 H 0.414 0.586 39 H 0.198 0.802 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.203 -16.305 1.691 29.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.040 3.960 4 H 0.133 0.867 5 C -0.017 4.017 6 N -0.364 5.364 7 C 0.323 3.677 8 O -0.434 6.434 9 C -0.267 4.267 10 S 0.059 5.941 11 C -0.680 4.680 12 H 0.077 0.923 13 C -0.161 4.161 14 N -0.556 5.556 15 Si 0.738 3.262 16 H -0.185 1.185 17 H -0.184 1.184 18 H -0.158 1.158 19 N -0.325 5.325 20 C 0.115 3.885 21 C -0.147 4.147 22 N -0.170 5.170 23 C 0.004 3.996 24 F -0.098 7.098 25 C -0.055 4.055 26 N -0.216 5.216 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.243 0.757 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.252 0.748 39 H 0.214 0.786 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.827 -17.715 1.249 28.921 hybrid contribution -0.500 1.992 0.569 2.131 sum -23.327 -15.723 1.818 28.190 Atomic orbital electron populations 1.21707 0.95160 1.02324 1.01421 1.21853 0.96396 0.93627 1.04674 1.21622 0.92221 0.95711 0.86441 0.86748 1.21944 0.93399 0.82528 1.03832 1.45650 1.05863 1.10797 1.74064 1.19789 0.82975 0.89257 0.75644 1.90701 1.56807 1.46590 1.49281 1.23286 0.98520 0.98030 1.06818 1.84606 1.03732 1.09898 1.95821 1.22479 0.96793 0.91671 1.57079 0.92340 1.25613 1.00848 0.96648 0.92991 1.70021 1.22524 1.14303 1.48793 0.85834 0.79287 0.80894 0.80153 1.18538 1.18379 1.15822 1.44639 1.45664 1.31433 1.10773 1.19499 0.89753 0.88928 0.90356 1.23353 0.97920 0.94396 0.99031 1.67538 1.09499 1.09700 1.30311 1.19002 0.97151 0.91661 0.91815 1.91601 1.66728 1.54516 1.96913 1.23660 0.92160 0.91199 0.98488 1.68109 1.13205 1.11975 1.28335 0.91793 0.94010 0.92355 0.90478 0.88381 0.90878 0.89136 0.75658 0.87262 0.87591 0.91327 0.74802 0.78593 0.77683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.74 71.98 0.70 -0.25 16 2 C -0.13 -0.61 5.61 30.60 0.17 -0.44 16 3 C 0.15 1.00 2.43 44.99 0.11 1.11 16 4 H 0.11 0.53 5.30 -2.39 -0.01 0.51 16 5 C 0.11 1.40 5.37 86.38 0.46 1.86 16 6 N -0.71 -13.81 5.39 -463.05 -2.49 -16.31 16 7 C 0.54 16.89 7.85 87.66 0.69 17.58 16 8 O -0.56 -21.69 15.86 -3.05 -0.05 -21.74 16 9 C -0.12 -4.25 6.16 71.23 0.44 -3.81 16 10 S -0.17 -8.30 18.55 -56.49 -1.05 -9.35 16 11 C -0.53 -31.06 10.04 67.96 0.68 -30.37 16 12 H 0.06 3.63 8.03 -2.91 -0.02 3.60 16 13 C 0.04 2.60 5.50 84.86 0.47 3.07 16 14 N -0.92 -56.18 13.97 21.65 0.30 -55.87 16 15 Si 0.92 44.65 27.74 68.60 1.90 46.55 16 16 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 18 H -0.23 -11.30 6.74 99.48 0.67 -10.63 16 19 N -0.69 -6.56 4.09 -324.15 -1.33 -7.89 16 20 C 0.36 4.90 7.66 132.96 1.02 5.91 16 21 C 0.02 0.33 10.49 84.90 0.89 1.22 16 22 N -0.45 -9.12 10.50 -195.80 -2.06 -11.18 16 23 C 0.16 3.11 8.43 84.66 0.71 3.82 16 24 F -0.12 -2.47 17.29 44.97 0.78 -1.69 16 25 C 0.11 1.65 11.20 84.69 0.95 2.60 16 26 N -0.49 -8.13 10.53 -192.40 -2.03 -10.15 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.04 0.39 7.90 -2.39 -0.02 0.37 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.10 0.28 8.14 -2.39 -0.02 0.27 16 32 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.41 6.60 8.14 -92.71 -0.75 5.84 16 35 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 36 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 37 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 38 H 0.41 4.01 8.96 -92.71 -0.83 3.18 16 39 H 0.20 1.70 5.74 -2.91 -0.02 1.68 16 40 H 0.21 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -76.66 360.91 0.76 -75.91 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -0.52 Total: 9.42 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 7.29 Total: 2.30 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -7.60 Total: -101.40 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.05 Total: -21.74 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.78 Total: -1.69 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.90 Total: 46.55 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.05 Total: -9.35 kcal Total: -76.66 0.76 -75.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102987054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.170 kcal (2) G-P(sol) polarization free energy of solvation -76.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds