Wall clock time and date at job start Tue Mar 31 2020 15:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47375 * 2 1 4 4 H 1.08999 * 109.47310 * 304.99863 * 3 2 1 5 5 C 1.53006 * 109.47350 * 185.00042 * 3 2 1 6 6 N 1.46498 * 109.47175 * 185.00175 * 5 3 2 7 7 C 1.34778 * 119.99835 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99602 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99935 * 179.97438 * 7 6 5 10 10 S 1.80993 * 109.47215 * 179.97438 * 9 7 6 11 11 C 1.76201 * 100.00227 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99920 * 359.97438 * 11 10 9 13 13 C 1.38800 * 120.00060 * 180.02562 * 11 10 9 14 14 N 1.31626 * 120.00183 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 120.00007 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46744 * 90.00158 * 15 13 11 17 17 H 1.48505 * 109.46950 * 209.99653 * 15 13 11 18 18 H 1.48492 * 109.46972 * 329.99876 * 15 13 11 19 19 N 1.46496 * 109.47060 * 64.99851 * 3 2 1 20 20 C 1.39119 * 120.00250 * 274.99842 * 19 3 2 21 21 N 1.32557 * 120.10710 * 0.02701 * 20 19 3 22 22 C 1.32313 * 119.94358 * 179.97438 * 21 20 19 23 23 C 1.38064 * 120.16452 * 359.97438 * 22 21 20 24 24 N 1.32354 * 120.21924 * 0.02562 * 23 22 21 25 25 C 1.32066 * 120.05744 * 0.02562 * 24 23 22 26 26 F 1.35096 * 120.08422 * 180.02562 * 25 24 23 27 27 H 1.08994 * 109.47430 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46698 * 300.00369 * 1 2 3 29 29 H 1.08999 * 109.46695 * 60.00118 * 1 2 3 30 30 H 1.09007 * 109.47120 * 240.00055 * 2 1 3 31 31 H 1.08999 * 109.47074 * 120.00268 * 2 1 3 32 32 H 1.09000 * 109.46521 * 305.00196 * 5 3 2 33 33 H 1.08998 * 109.46768 * 64.99786 * 5 3 2 34 34 H 0.97004 * 119.99989 * 359.97438 * 6 5 3 35 35 H 1.08996 * 109.47208 * 299.99972 * 9 7 6 36 36 H 1.09007 * 109.46893 * 59.99623 * 9 7 6 37 37 H 0.97000 * 120.00758 * 180.02562 * 14 13 11 38 38 H 0.97006 * 119.99854 * 94.99978 * 19 3 2 39 39 H 1.07991 * 119.91942 * 179.97438 * 22 21 20 40 40 H 1.07995 * 119.88791 * 180.28255 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5650 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0059 7 6 5.3858 3.0629 -0.0868 8 8 6.1635 2.1481 -0.2583 9 6 5.8983 4.4747 0.0358 10 16 7.7021 4.4768 -0.1127 11 6 8.0217 6.2007 0.0631 12 1 7.2030 6.8892 0.2110 13 6 9.3255 6.6737 0.0104 14 7 9.5642 7.9615 0.1413 15 14 10.7416 5.4827 -0.2461 16 1 11.0020 5.3293 -1.7000 17 1 11.9588 6.0097 0.4219 18 1 10.3897 4.1627 0.3358 19 7 1.6525 2.0974 1.2518 20 6 0.3960 2.6827 1.3706 21 7 -0.4524 2.6485 0.3527 22 6 -1.6468 3.2057 0.4695 23 6 -2.0122 3.8225 1.6494 24 7 -1.1702 3.8605 2.6698 25 6 0.0246 3.3079 2.5625 26 9 0.8843 3.3459 3.6039 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.9954 0.8310 0.6659 33 1 3.8499 1.0376 -1.0960 34 1 3.4411 3.5483 0.1309 35 1 5.4675 5.0877 -0.7558 36 1 5.6135 4.8816 1.0062 37 1 10.4753 8.2923 0.1041 38 1 2.2720 2.1230 1.9978 39 1 -2.3375 3.1779 -0.3601 40 1 -2.9899 4.2719 1.7414 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102987324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:41 Heat of formation + Delta-G solvation = -23.123390 kcal Electronic energy + Delta-G solvation = -24970.572131 eV Core-core repulsion = 21054.752435 eV Total energy + Delta-G solvation = -3915.819696 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.33886 -41.44299 -39.57444 -38.02370 -34.88447 -33.86936 -33.23877 -32.45585 -30.65723 -29.73612 -27.84614 -25.63964 -25.11490 -24.13640 -23.54477 -21.36741 -20.44677 -18.96326 -18.39413 -18.14504 -17.87263 -16.86203 -16.47214 -16.31077 -15.90705 -15.49970 -15.17726 -14.99484 -14.89714 -14.41759 -13.98805 -13.87363 -13.78594 -13.72636 -13.44247 -13.08126 -12.81250 -12.71505 -12.26988 -12.05277 -11.81936 -11.78056 -11.46337 -11.28121 -11.16482 -11.02460 -10.64757 -10.52683 -9.87843 -9.67222 -9.61111 -9.12211 -9.01271 -8.53199 -8.30372 -6.94379 -6.30422 -4.02661 0.34468 0.69455 2.36823 2.71272 2.89455 3.07070 3.18130 3.26041 3.32033 3.48761 3.60637 3.72979 3.81726 4.23134 4.31395 4.56945 4.59438 4.69832 4.71586 4.74759 5.00649 5.04355 5.08557 5.12331 5.24089 5.35866 5.42413 5.61450 5.62665 5.66304 5.72192 5.83699 5.97509 6.02055 6.34883 6.43876 6.48707 6.96683 7.36004 7.48474 7.92567 8.39241 8.40381 9.15528 10.78863 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.002598 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.116091 B =10775.893578 C =11783.542382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 C 0.144 3.856 4 H 0.101 0.899 5 C 0.112 3.888 6 N -0.738 5.738 7 C 0.532 3.468 8 O -0.517 6.517 9 C -0.125 4.125 10 S -0.140 6.140 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.703 5.703 20 C 0.355 3.645 21 N -0.470 5.470 22 C 0.093 3.907 23 C 0.011 3.989 24 N -0.431 5.431 25 C 0.197 3.803 26 F -0.107 7.107 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.400 0.600 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.271 0.729 38 H 0.417 0.583 39 H 0.178 0.822 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.093 -13.824 0.338 29.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C 0.039 3.961 4 H 0.119 0.881 5 C -0.013 4.013 6 N -0.393 5.393 7 C 0.318 3.682 8 O -0.391 6.391 9 C -0.275 4.275 10 S 0.086 5.914 11 C -0.670 4.670 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.337 5.337 20 C 0.113 3.887 21 N -0.193 5.193 22 C -0.067 4.067 23 C -0.149 4.149 24 N -0.150 5.150 25 C 0.031 3.969 26 F -0.086 7.086 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.234 0.766 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.256 0.744 39 H 0.195 0.805 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -24.554 -15.300 -0.088 28.931 hybrid contribution -0.175 1.316 0.748 1.523 sum -24.729 -13.984 0.660 28.417 Atomic orbital electron populations 1.21764 0.94749 1.00593 1.02508 1.21910 0.97180 0.95137 1.02957 1.21391 0.93531 0.94278 0.86861 0.88120 1.21627 0.91448 0.84656 1.03563 1.45949 1.07777 1.08951 1.76617 1.20294 0.81469 0.91059 0.75413 1.90709 1.55450 1.46104 1.46886 1.23278 1.03106 0.95394 1.05766 1.84770 0.97820 1.13013 1.95802 1.22311 0.97260 0.89796 1.57590 0.89401 1.24718 0.98277 0.95053 0.93265 1.69934 1.21481 1.12543 1.47706 0.86731 0.82119 0.83087 0.79882 1.19195 1.19915 1.15923 1.44755 1.12236 1.59147 1.17552 1.19035 0.88739 0.91690 0.89257 1.68276 1.03589 1.20152 1.27309 1.23557 0.92551 0.92138 0.98458 1.23197 1.00084 1.02370 0.89231 1.67616 1.01092 1.14148 1.32169 1.18435 0.89179 1.04206 0.85059 1.91640 1.66236 1.94632 1.56092 0.93466 0.93380 0.91580 0.90379 0.91515 0.90841 0.89654 0.76583 0.88518 0.88470 0.91906 0.74442 0.80549 0.80803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.45 37.16 0.31 -0.62 16 2 C -0.13 -0.85 5.61 -26.73 -0.15 -1.00 16 3 C 0.14 1.04 2.42 -67.93 -0.16 0.87 16 4 H 0.10 0.77 7.56 -51.93 -0.39 0.38 16 5 C 0.11 1.04 5.23 -4.04 -0.02 1.02 16 6 N -0.74 -8.61 5.39 -60.29 -0.32 -8.93 16 7 C 0.53 9.02 7.85 -10.99 -0.09 8.93 16 8 O -0.52 -10.69 15.86 5.56 0.09 -10.60 16 9 C -0.12 -2.38 6.16 36.00 0.22 -2.16 16 10 S -0.14 -3.53 18.55 -107.50 -1.99 -5.53 16 11 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 12 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 13 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 14 N -0.88 -26.62 13.97 55.49 0.78 -25.85 16 15 Si 0.86 21.75 27.74 -169.99 -4.72 17.04 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 19 N -0.70 -5.36 4.60 -53.73 -0.25 -5.60 16 20 C 0.35 3.05 6.04 -154.59 -0.93 2.12 16 21 N -0.47 -3.55 6.62 -12.17 -0.08 -3.63 16 22 C 0.09 0.51 11.21 -17.41 -0.20 0.32 16 23 C 0.01 0.07 11.21 -17.39 -0.19 -0.12 16 24 N -0.43 -4.30 10.50 -13.24 -0.14 -4.44 16 25 C 0.20 2.00 8.47 -16.93 -0.14 1.85 16 26 F -0.11 -1.18 16.68 2.25 0.04 -1.14 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.38 5.59 -51.93 -0.29 0.09 16 29 H 0.07 0.45 7.68 -51.93 -0.40 0.05 16 30 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.40 3.99 8.14 -40.82 -0.33 3.65 16 35 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 36 H 0.10 1.74 8.14 -51.91 -0.42 1.31 16 37 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.42 3.18 8.09 -40.82 -0.33 2.85 16 39 H 0.18 0.34 8.06 -52.49 -0.42 -0.08 16 40 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -34.99 355.55 -7.51 -42.49 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.13 Total: 1.65 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.14 Total: -0.82 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.02 Total: -48.46 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.72 Total: 17.04 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.99 -7.51 -42.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102987324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.371 kcal (2) G-P(sol) polarization free energy of solvation -34.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds