Wall clock time and date at job start Tue Mar 31 2020 15:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47375 * 2 1 4 4 H 1.08999 * 109.47310 * 304.99863 * 3 2 1 5 5 C 1.53006 * 109.47350 * 185.00042 * 3 2 1 6 6 N 1.46498 * 109.47175 * 185.00175 * 5 3 2 7 7 C 1.34778 * 119.99835 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99602 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99935 * 179.97438 * 7 6 5 10 10 S 1.80993 * 109.47215 * 179.97438 * 9 7 6 11 11 C 1.76201 * 100.00227 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99920 * 359.97438 * 11 10 9 13 13 C 1.38800 * 120.00060 * 180.02562 * 11 10 9 14 14 N 1.31626 * 120.00183 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 120.00007 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46744 * 90.00158 * 15 13 11 17 17 H 1.48505 * 109.46950 * 209.99653 * 15 13 11 18 18 H 1.48492 * 109.46972 * 329.99876 * 15 13 11 19 19 N 1.46496 * 109.47060 * 64.99851 * 3 2 1 20 20 C 1.39119 * 120.00250 * 274.99842 * 19 3 2 21 21 N 1.32557 * 120.10710 * 0.02701 * 20 19 3 22 22 C 1.32313 * 119.94358 * 179.97438 * 21 20 19 23 23 C 1.38064 * 120.16452 * 359.97438 * 22 21 20 24 24 N 1.32354 * 120.21924 * 0.02562 * 23 22 21 25 25 C 1.32066 * 120.05744 * 0.02562 * 24 23 22 26 26 F 1.35096 * 120.08422 * 180.02562 * 25 24 23 27 27 H 1.08994 * 109.47430 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46698 * 300.00369 * 1 2 3 29 29 H 1.08999 * 109.46695 * 60.00118 * 1 2 3 30 30 H 1.09007 * 109.47120 * 240.00055 * 2 1 3 31 31 H 1.08999 * 109.47074 * 120.00268 * 2 1 3 32 32 H 1.09000 * 109.46521 * 305.00196 * 5 3 2 33 33 H 1.08998 * 109.46768 * 64.99786 * 5 3 2 34 34 H 0.97004 * 119.99989 * 359.97438 * 6 5 3 35 35 H 1.08996 * 109.47208 * 299.99972 * 9 7 6 36 36 H 1.09007 * 109.46893 * 59.99623 * 9 7 6 37 37 H 0.97000 * 120.00758 * 180.02562 * 14 13 11 38 38 H 0.97006 * 119.99854 * 94.99978 * 19 3 2 39 39 H 1.07991 * 119.91942 * 179.97438 * 22 21 20 40 40 H 1.07995 * 119.88791 * 180.28255 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5650 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0059 7 6 5.3858 3.0629 -0.0868 8 8 6.1635 2.1481 -0.2583 9 6 5.8983 4.4747 0.0358 10 16 7.7021 4.4768 -0.1127 11 6 8.0217 6.2007 0.0631 12 1 7.2030 6.8892 0.2110 13 6 9.3255 6.6737 0.0104 14 7 9.5642 7.9615 0.1413 15 14 10.7416 5.4827 -0.2461 16 1 11.0020 5.3293 -1.7000 17 1 11.9588 6.0097 0.4219 18 1 10.3897 4.1627 0.3358 19 7 1.6525 2.0974 1.2518 20 6 0.3960 2.6827 1.3706 21 7 -0.4524 2.6485 0.3527 22 6 -1.6468 3.2057 0.4695 23 6 -2.0122 3.8225 1.6494 24 7 -1.1702 3.8605 2.6698 25 6 0.0246 3.3079 2.5625 26 9 0.8843 3.3459 3.6039 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.9954 0.8310 0.6659 33 1 3.8499 1.0376 -1.0960 34 1 3.4411 3.5483 0.1309 35 1 5.4675 5.0877 -0.7558 36 1 5.6135 4.8816 1.0062 37 1 10.4753 8.2923 0.1041 38 1 2.2720 2.1230 1.9978 39 1 -2.3375 3.1779 -0.3601 40 1 -2.9899 4.2719 1.7414 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102987324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:40 Heat of formation + Delta-G solvation = -48.821007 kcal Electronic energy + Delta-G solvation = -24971.686463 eV Core-core repulsion = 21054.752435 eV Total energy + Delta-G solvation = -3916.934028 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = -0.68 seconds Orbital eigenvalues (eV) -50.05221 -42.01471 -40.77475 -38.82087 -35.73999 -34.71689 -34.66433 -33.82089 -31.66989 -30.63812 -28.74868 -27.85581 -25.73623 -24.74690 -24.24281 -22.08608 -21.59859 -20.01938 -19.44893 -19.03587 -18.73254 -17.90055 -17.47328 -17.41538 -17.08127 -16.80177 -16.29448 -16.04052 -15.79693 -15.45683 -15.04327 -14.97933 -14.80548 -14.61429 -14.45628 -14.27058 -13.99934 -13.52494 -13.36528 -13.21071 -13.01199 -12.84249 -12.71923 -12.47346 -12.37144 -12.07213 -11.86997 -11.70697 -11.18638 -11.17647 -10.98823 -10.56648 -10.27674 -10.17868 -9.01500 -8.88325 -8.53203 -6.24383 -0.21412 0.12834 0.96757 1.30631 1.45254 1.51754 1.54056 1.78287 2.18103 2.24392 2.48978 2.64147 2.69145 2.85056 3.24235 3.27263 3.54179 3.80082 4.00750 4.07895 4.14113 4.18750 4.30441 4.40823 4.43320 4.56915 4.58932 4.66384 4.78985 4.95838 5.11323 5.15894 5.31686 5.32090 5.49614 5.68747 5.84901 5.91222 6.09515 6.35215 6.39637 6.79030 6.91677 7.11588 8.59426 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.002598 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.116091 B =10775.893578 C =11783.542382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.130 4.130 3 C 0.159 3.841 4 H 0.103 0.897 5 C 0.113 3.887 6 N -0.713 5.713 7 C 0.538 3.462 8 O -0.557 6.557 9 C -0.114 4.114 10 S -0.170 6.170 11 C -0.531 4.531 12 H 0.060 0.940 13 C 0.044 3.956 14 N -0.918 5.918 15 Si 0.916 3.084 16 H -0.261 1.261 17 H -0.259 1.259 18 H -0.235 1.235 19 N -0.704 5.704 20 C 0.353 3.647 21 N -0.475 5.475 22 C 0.106 3.894 23 C 0.013 3.987 24 N -0.462 5.462 25 C 0.161 3.839 26 F -0.123 7.123 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.411 0.589 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.277 0.723 38 H 0.416 0.584 39 H 0.219 0.781 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.985 -15.202 -0.799 31.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.169 4.169 3 C 0.054 3.946 4 H 0.121 0.879 5 C -0.011 4.011 6 N -0.366 5.366 7 C 0.323 3.677 8 O -0.435 6.435 9 C -0.265 4.265 10 S 0.057 5.943 11 C -0.679 4.679 12 H 0.078 0.922 13 C -0.161 4.161 14 N -0.556 5.556 15 Si 0.738 3.262 16 H -0.186 1.186 17 H -0.184 1.184 18 H -0.159 1.159 19 N -0.338 5.338 20 C 0.112 3.888 21 N -0.198 5.198 22 C -0.055 4.055 23 C -0.148 4.148 24 N -0.181 5.181 25 C -0.003 4.003 26 F -0.103 7.103 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.248 0.752 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.254 0.746 39 H 0.235 0.765 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -26.469 -16.679 -1.206 31.309 hybrid contribution 0.100 1.772 1.066 2.070 sum -26.369 -14.908 -0.140 30.292 Atomic orbital electron populations 1.21692 0.94689 1.00705 1.01880 1.21897 0.97091 0.94414 1.03486 1.21271 0.91687 0.94943 0.86720 0.87896 1.21791 0.92815 0.82783 1.03735 1.45710 1.05996 1.10654 1.74278 1.19852 0.82842 0.89436 0.75530 1.90700 1.56791 1.46669 1.49318 1.23278 0.98437 0.97725 1.07080 1.84641 1.03718 1.09998 1.95944 1.22468 0.96749 0.91547 1.57096 0.92205 1.25600 1.00841 0.96639 0.93016 1.70016 1.22519 1.14248 1.48829 0.85843 0.79350 0.80895 0.80134 1.18553 1.18367 1.15918 1.44743 1.12163 1.59263 1.17582 1.18976 0.89094 0.91673 0.89045 1.68370 1.04252 1.20404 1.26794 1.24275 0.92124 0.89888 0.99189 1.23855 1.00645 1.01604 0.88658 1.67592 1.01603 1.14917 1.33993 1.18595 0.89685 1.06471 0.85522 1.91582 1.66811 1.94983 1.56886 0.93019 0.94703 0.91351 0.89179 0.91696 0.90950 0.89315 0.75245 0.87108 0.87223 0.91327 0.74628 0.76470 0.77625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.45 71.98 0.61 -0.88 16 2 C -0.13 -1.38 5.61 30.59 0.17 -1.21 16 3 C 0.16 1.96 2.42 44.99 0.11 2.07 16 4 H 0.10 1.30 7.56 -2.39 -0.02 1.28 16 5 C 0.11 1.89 5.23 86.38 0.45 2.35 16 6 N -0.71 -15.39 5.39 -463.06 -2.49 -17.88 16 7 C 0.54 17.59 7.85 87.66 0.69 18.27 16 8 O -0.56 -22.56 15.86 -3.04 -0.05 -22.61 16 9 C -0.11 -4.26 6.16 71.23 0.44 -3.82 16 10 S -0.17 -8.51 18.55 -56.49 -1.05 -9.56 16 11 C -0.53 -31.05 10.04 67.95 0.68 -30.37 16 12 H 0.06 3.71 8.03 -2.91 -0.02 3.68 16 13 C 0.04 2.61 5.50 84.86 0.47 3.08 16 14 N -0.92 -56.27 13.97 21.65 0.30 -55.97 16 15 Si 0.92 44.97 27.74 68.60 1.90 46.87 16 16 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.24 -11.48 6.74 99.48 0.67 -10.81 16 19 N -0.70 -9.94 4.60 -323.90 -1.49 -11.43 16 20 C 0.35 5.68 6.04 133.10 0.80 6.49 16 21 N -0.48 -6.07 6.62 -192.42 -1.27 -7.34 16 22 C 0.11 0.83 11.21 84.58 0.95 1.78 16 23 C 0.01 0.14 11.21 84.57 0.95 1.09 16 24 N -0.46 -8.88 10.50 -195.80 -2.06 -10.93 16 25 C 0.16 3.25 8.47 84.99 0.72 3.97 16 26 F -0.12 -2.83 16.68 44.97 0.75 -2.08 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.03 0.49 5.59 -2.39 -0.01 0.48 16 29 H 0.07 0.74 7.68 -2.39 -0.02 0.72 16 30 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.41 7.36 8.14 -92.71 -0.75 6.61 16 35 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 36 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 37 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 38 H 0.42 6.11 8.09 -92.70 -0.75 5.36 16 39 H 0.22 -0.21 8.06 -2.92 -0.02 -0.23 16 40 H 0.21 0.59 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -77.25 355.55 1.13 -76.12 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -0.45 Total: 12.01 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 7.04 Total: 2.81 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -7.01 Total: -103.56 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.05 Total: -22.61 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.75 Total: -2.08 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.87 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.05 Total: -9.56 kcal Total: -77.25 1.13 -76.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102987324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.301 kcal (2) G-P(sol) polarization free energy of solvation -77.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.68 seconds