Wall clock time and date at job start Tue Mar 31 2020 16:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 N 1.46499 * 109.46840 * 294.99527 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00071 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47178 * 180.02562 * 8 6 5 10 10 C 1.76198 * 100.00092 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00019 * 359.97438 * 10 9 8 12 12 C 1.38793 * 120.00035 * 180.02562 * 10 9 8 13 13 N 1.31631 * 119.99949 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00227 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47214 * 59.99064 * 14 12 10 16 16 H 1.48496 * 109.47437 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46536 * 299.99502 * 14 12 10 18 18 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 19 19 N 1.46506 * 109.46916 * 64.99869 * 18 2 1 20 20 C 1.39111 * 120.00031 * 179.97438 * 19 18 2 21 21 N 1.32577 * 120.11032 * 0.02562 * 20 19 18 22 22 C 1.32299 * 119.94129 * 179.97438 * 21 20 19 23 23 C 1.38062 * 120.16945 * 359.97438 * 22 21 20 24 24 N 1.32337 * 120.22332 * 359.97438 * 23 22 21 25 25 C 1.32073 * 120.05346 * 359.71158 * 24 23 22 26 26 F 1.35100 * 120.08604 * 180.27189 * 25 24 23 27 27 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 29 29 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 30 30 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 31 31 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 32 32 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 33 33 H 1.09002 * 109.47152 * 300.00160 * 8 6 5 34 34 H 1.09001 * 109.46980 * 60.00059 * 8 6 5 35 35 H 0.97005 * 119.99745 * 180.02562 * 13 12 10 36 36 H 1.08993 * 109.47416 * 185.00006 * 18 2 1 37 37 H 1.09001 * 109.46966 * 305.00739 * 18 2 1 38 38 H 0.96999 * 119.99735 * 0.02562 * 19 18 2 39 39 H 1.08001 * 119.91360 * 179.97438 * 22 21 20 40 40 H 1.08005 * 119.88746 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 0.0354 2.4423 6 6 1.9964 -0.4130 3.6659 7 8 2.6263 -1.4431 3.7793 8 6 1.5973 0.3651 4.8933 9 16 2.2019 -0.4872 6.3711 10 6 1.6124 0.6082 7.6189 11 1 1.0596 1.4940 7.3426 12 6 1.8593 0.3334 8.9568 13 7 2.5335 -0.7459 9.2934 14 14 1.2338 1.4944 10.2797 15 1 -0.2463 1.5852 10.1992 16 1 1.6257 0.9793 11.6162 17 1 1.8241 2.8417 10.0753 18 6 2.0401 -0.7214 -1.2492 19 7 1.6524 0.0352 -2.4424 20 6 2.0075 -0.4277 -3.7053 21 7 2.6962 -1.5535 -3.8316 22 6 3.0316 -1.9909 -5.0343 23 6 2.6659 -1.2782 -6.1588 24 7 1.9775 -0.1542 -6.0404 25 6 1.6326 0.2873 -4.8444 26 9 0.9252 1.4319 -4.7231 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2057 32 1 1.1483 0.8592 2.3517 33 1 2.0312 1.3640 4.8473 34 1 0.5109 0.4426 4.9370 35 1 2.7057 -0.9381 10.2285 36 1 3.1263 -0.7996 -1.2056 37 1 1.6053 -1.7199 -1.2951 38 1 1.1489 0.8593 -2.3518 39 1 3.5930 -2.9079 -5.1367 40 1 2.9418 -1.6398 -7.1384 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103881239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:47 Heat of formation + Delta-G solvation = -32.909209 kcal Electronic energy + Delta-G solvation = -23781.685728 eV Core-core repulsion = 19865.441688 eV Total energy + Delta-G solvation = -3916.244041 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.46658 -41.39924 -39.42874 -37.92358 -35.68173 -34.18712 -32.80102 -32.44201 -30.35442 -29.29287 -27.30917 -25.96948 -25.42171 -24.67060 -23.52846 -20.98460 -20.42380 -18.94550 -18.47387 -18.16422 -17.76181 -16.89663 -16.41380 -16.26246 -15.77367 -15.66597 -15.06891 -14.92608 -14.81421 -14.48103 -14.42713 -13.98906 -13.89618 -13.66782 -13.32728 -13.19168 -12.95814 -12.58393 -12.21028 -12.13722 -11.81500 -11.58225 -11.42110 -11.28626 -11.06155 -11.05100 -10.78347 -10.63245 -9.84502 -9.77096 -9.45397 -9.08058 -8.94296 -8.37418 -8.26114 -6.51929 -6.22996 -3.93931 0.26553 0.62345 2.30814 2.95761 3.02863 3.06212 3.11700 3.22306 3.26432 3.29649 3.61832 3.69863 3.80129 4.19041 4.33771 4.38284 4.45951 4.54909 4.67005 4.95329 4.98819 5.10531 5.12076 5.22850 5.25454 5.38902 5.47578 5.57401 5.61365 5.68436 5.83387 5.85620 5.89516 6.10900 6.31709 6.40665 6.55225 6.87702 7.30223 7.57597 7.64496 8.33390 8.56947 9.22155 10.84334 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.039318 B = 0.001667 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.964287 B =16788.555597 C =17340.344803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 H 0.085 0.915 4 C 0.130 3.870 5 N -0.738 5.738 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.154 4.154 9 S -0.060 6.060 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.137 3.863 19 N -0.705 5.705 20 C 0.354 3.646 21 N -0.478 5.478 22 C 0.100 3.900 23 C 0.009 3.991 24 N -0.431 5.431 25 C 0.194 3.806 26 F -0.109 7.109 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.398 0.602 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.269 0.731 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.415 0.585 39 H 0.179 0.821 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 1.449 -30.308 30.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.136 4.136 3 H 0.103 0.897 4 C 0.005 3.995 5 N -0.393 5.393 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C 0.013 3.987 19 N -0.338 5.338 20 C 0.111 3.889 21 N -0.201 5.201 22 C -0.060 4.060 23 C -0.151 4.151 24 N -0.150 5.150 25 C 0.028 3.972 26 F -0.088 7.088 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.232 0.768 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.253 0.747 39 H 0.196 0.804 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.271 -0.476 -29.771 29.802 hybrid contribution -1.706 2.914 0.607 3.431 sum -2.978 2.438 -29.164 29.417 Atomic orbital electron populations 1.21902 0.93932 1.02932 1.02063 1.21615 0.97209 1.00861 0.93918 0.89656 1.21139 1.00279 0.95373 0.82668 1.45969 1.59743 1.28160 1.05469 1.20309 0.78668 0.85483 0.83754 1.90709 1.38320 1.23829 1.86168 1.23533 1.04804 1.03464 0.98635 1.85403 1.72741 1.33021 0.92141 1.22827 1.41595 1.11292 0.92805 0.90976 1.24990 0.94832 0.95802 0.97925 1.70009 1.37359 1.24603 1.18287 0.86223 0.79183 0.80332 0.79752 1.19947 1.20791 1.19945 1.21344 1.00570 0.95119 0.81676 1.44607 1.59656 1.27931 1.01650 1.19087 0.92658 0.90839 0.86279 1.68151 1.13836 1.11167 1.26966 1.23596 0.95502 0.99844 0.87104 1.23210 0.99413 0.91382 1.01126 1.67593 1.09559 1.13934 1.23926 1.18403 1.01261 0.87640 0.89886 1.91615 1.75512 1.45904 1.95801 0.91850 0.91759 0.92570 0.91117 0.91205 0.76821 0.89232 0.89225 0.92111 0.90691 0.90641 0.74681 0.80364 0.80643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.94 37.16 0.33 -0.60 16 2 C -0.12 -0.76 2.46 -90.62 -0.22 -0.99 16 3 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 4 C 0.13 1.32 5.06 -4.04 -0.02 1.30 16 5 N -0.74 -8.96 5.28 -60.29 -0.32 -9.28 16 6 C 0.53 9.54 7.85 -10.98 -0.09 9.46 16 7 O -0.52 -11.46 15.86 5.56 0.09 -11.37 16 8 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 11 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 14 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C 0.14 0.93 5.11 -4.04 -0.02 0.91 16 19 N -0.71 -4.80 5.44 -60.21 -0.33 -5.12 16 20 C 0.35 2.98 7.50 -154.58 -1.16 1.82 16 21 N -0.48 -3.92 9.73 -12.17 -0.12 -4.04 16 22 C 0.10 0.55 11.21 -17.41 -0.20 0.36 16 23 C 0.01 0.05 11.21 -17.40 -0.19 -0.14 16 24 N -0.43 -3.92 10.50 -13.24 -0.14 -4.06 16 25 C 0.19 1.78 8.47 -16.93 -0.14 1.63 16 26 F -0.11 -1.00 16.68 2.25 0.04 -0.96 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.41 7.18 -51.93 -0.37 0.03 16 29 H 0.06 0.29 7.18 -51.93 -0.37 -0.08 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.40 3.66 7.65 -40.82 -0.31 3.35 16 33 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 34 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.42 2.29 7.14 -40.82 -0.29 2.00 16 39 H 0.18 0.35 8.06 -52.49 -0.42 -0.07 16 40 H 0.18 0.42 8.06 -52.48 -0.42 0.00 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -36.17 363.64 -8.21 -44.38 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.12 Total: -0.21 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.29 Total: -1.94 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.17 Total: -47.79 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.17 -8.21 -44.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103881239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.469 kcal (2) G-P(sol) polarization free energy of solvation -36.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds