Wall clock time and date at job start Tue Mar 31 2020 16:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 N 1.46499 * 109.46840 * 294.99527 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00071 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47178 * 180.02562 * 8 6 5 10 10 C 1.76198 * 100.00092 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00019 * 359.97438 * 10 9 8 12 12 C 1.38793 * 120.00035 * 180.02562 * 10 9 8 13 13 N 1.31631 * 119.99949 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00227 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47214 * 59.99064 * 14 12 10 16 16 H 1.48496 * 109.47437 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46536 * 299.99502 * 14 12 10 18 18 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 19 19 N 1.46506 * 109.46916 * 64.99869 * 18 2 1 20 20 C 1.39111 * 120.00031 * 179.97438 * 19 18 2 21 21 N 1.32577 * 120.11032 * 0.02562 * 20 19 18 22 22 C 1.32299 * 119.94129 * 179.97438 * 21 20 19 23 23 C 1.38062 * 120.16945 * 359.97438 * 22 21 20 24 24 N 1.32337 * 120.22332 * 359.97438 * 23 22 21 25 25 C 1.32073 * 120.05346 * 359.71158 * 24 23 22 26 26 F 1.35100 * 120.08604 * 180.27189 * 25 24 23 27 27 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 29 29 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 30 30 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 31 31 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 32 32 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 33 33 H 1.09002 * 109.47152 * 300.00160 * 8 6 5 34 34 H 1.09001 * 109.46980 * 60.00059 * 8 6 5 35 35 H 0.97005 * 119.99745 * 180.02562 * 13 12 10 36 36 H 1.08993 * 109.47416 * 185.00006 * 18 2 1 37 37 H 1.09001 * 109.46966 * 305.00739 * 18 2 1 38 38 H 0.96999 * 119.99735 * 0.02562 * 19 18 2 39 39 H 1.08001 * 119.91360 * 179.97438 * 22 21 20 40 40 H 1.08005 * 119.88746 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 0.0354 2.4423 6 6 1.9964 -0.4130 3.6659 7 8 2.6263 -1.4431 3.7793 8 6 1.5973 0.3651 4.8933 9 16 2.2019 -0.4872 6.3711 10 6 1.6124 0.6082 7.6189 11 1 1.0596 1.4940 7.3426 12 6 1.8593 0.3334 8.9568 13 7 2.5335 -0.7459 9.2934 14 14 1.2338 1.4944 10.2797 15 1 -0.2463 1.5852 10.1992 16 1 1.6257 0.9793 11.6162 17 1 1.8241 2.8417 10.0753 18 6 2.0401 -0.7214 -1.2492 19 7 1.6524 0.0352 -2.4424 20 6 2.0075 -0.4277 -3.7053 21 7 2.6962 -1.5535 -3.8316 22 6 3.0316 -1.9909 -5.0343 23 6 2.6659 -1.2782 -6.1588 24 7 1.9775 -0.1542 -6.0404 25 6 1.6326 0.2873 -4.8444 26 9 0.9252 1.4319 -4.7231 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2057 32 1 1.1483 0.8592 2.3517 33 1 2.0312 1.3640 4.8473 34 1 0.5109 0.4426 4.9370 35 1 2.7057 -0.9381 10.2285 36 1 3.1263 -0.7996 -1.2056 37 1 1.6053 -1.7199 -1.2951 38 1 1.1489 0.8593 -2.3518 39 1 3.5930 -2.9079 -5.1367 40 1 2.9418 -1.6398 -7.1384 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103881239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:46 Heat of formation + Delta-G solvation = -59.892738 kcal Electronic energy + Delta-G solvation = -23782.855822 eV Core-core repulsion = 19865.441688 eV Total energy + Delta-G solvation = -3917.414134 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.08178 -41.92614 -40.70398 -38.68031 -36.50230 -34.87967 -34.57846 -33.69665 -31.22600 -30.40954 -27.92406 -27.67289 -26.65437 -25.24813 -24.14740 -21.82084 -21.56439 -19.90923 -19.43248 -19.04913 -18.65331 -17.75109 -17.50522 -17.30812 -16.87256 -16.77368 -16.27493 -16.04842 -15.88476 -15.44011 -15.15509 -15.00474 -14.81442 -14.48663 -14.38632 -14.29089 -13.86293 -13.83927 -13.36477 -13.16420 -12.86412 -12.74649 -12.64072 -12.61672 -12.19985 -12.09415 -11.88290 -11.73501 -11.17397 -11.12449 -10.97267 -10.30102 -10.27135 -10.11536 -8.89939 -8.66086 -8.33996 -6.12152 -0.25489 0.08940 1.27073 1.44247 1.46942 1.56226 1.62453 1.77998 2.27221 2.32407 2.46389 2.60673 3.00089 3.22179 3.24427 3.33148 3.69527 3.78018 3.85302 4.02924 4.06559 4.30460 4.31024 4.38193 4.52204 4.52672 4.54002 4.71837 4.75431 4.88199 4.92573 5.10730 5.23245 5.31810 5.42068 5.44538 5.80171 5.91156 6.20063 6.37642 6.50519 6.79945 7.07241 7.25311 8.74880 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.039318 B = 0.001667 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.964287 B =16788.555597 C =17340.344803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 H 0.101 0.899 4 C 0.129 3.871 5 N -0.710 5.710 6 C 0.533 3.467 7 O -0.566 6.566 8 C -0.130 4.130 9 S -0.153 6.153 10 C -0.548 4.548 11 H 0.083 0.917 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.998 3.002 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.262 1.262 18 C 0.145 3.855 19 N -0.701 5.701 20 C 0.346 3.654 21 N -0.498 5.498 22 C 0.107 3.893 23 C 0.014 3.986 24 N -0.458 5.458 25 C 0.168 3.832 26 F -0.117 7.117 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.416 0.584 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.271 0.729 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.421 0.579 39 H 0.216 0.784 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.245 2.799 -31.708 31.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 H 0.120 0.880 4 C 0.005 3.995 5 N -0.364 5.364 6 C 0.319 3.681 7 O -0.444 6.444 8 C -0.281 4.281 9 S 0.074 5.926 10 C -0.695 4.695 11 H 0.101 0.899 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.820 3.180 15 H -0.187 1.187 16 H -0.205 1.205 17 H -0.187 1.187 18 C 0.020 3.980 19 N -0.335 5.335 20 C 0.104 3.896 21 N -0.222 5.222 22 C -0.053 4.053 23 C -0.147 4.147 24 N -0.177 5.177 25 C 0.004 3.996 26 F -0.097 7.097 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.254 0.746 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.260 0.740 39 H 0.233 0.767 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.116 0.939 -31.208 31.294 hybrid contribution -1.418 2.415 0.819 2.918 sum -3.534 3.354 -30.389 30.777 Atomic orbital electron populations 1.21905 0.93252 1.02698 1.02901 1.21441 0.97514 1.01029 0.91804 0.88043 1.21258 0.99984 0.95298 0.83009 1.45680 1.58109 1.28434 1.04212 1.20043 0.78461 0.84710 0.84871 1.90699 1.40890 1.25930 1.86922 1.23378 1.05762 1.03376 0.95620 1.85585 1.74233 1.35913 0.96820 1.23181 1.41564 1.11470 0.93325 0.89855 1.26123 0.94804 0.97558 1.00648 1.70180 1.38897 1.26809 1.18858 0.85011 0.78977 0.77968 0.76080 1.18666 1.20451 1.18667 1.21195 1.00102 0.94891 0.81772 1.44531 1.59681 1.28091 1.01172 1.19126 0.92989 0.91056 0.86464 1.68218 1.14266 1.11266 1.28449 1.24266 0.94359 1.00529 0.86181 1.23861 0.97842 0.90150 1.02855 1.67605 1.10561 1.15385 1.24197 1.18490 1.02665 0.88114 0.90374 1.91579 1.75849 1.46347 1.95880 0.92667 0.91490 0.91170 0.92000 0.91938 0.74618 0.87168 0.87141 0.92010 0.91333 0.91267 0.74031 0.76709 0.77226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.94 71.98 0.64 -0.89 16 2 C -0.10 -1.11 2.46 -10.79 -0.03 -1.13 16 3 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 4 C 0.13 2.45 5.06 86.38 0.44 2.89 16 5 N -0.71 -15.95 5.28 -463.05 -2.45 -18.39 16 6 C 0.53 18.80 7.85 87.66 0.69 19.49 16 7 O -0.57 -25.62 15.86 -3.02 -0.05 -25.67 16 8 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 9 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 10 C -0.55 -30.98 9.50 67.95 0.65 -30.34 16 11 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 12 C 0.01 0.76 5.49 84.86 0.47 1.23 16 13 N -0.91 -55.76 13.22 21.65 0.29 -55.47 16 14 Si 1.00 43.20 29.55 68.60 2.03 45.23 16 15 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 16 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 18 C 0.14 1.81 5.11 86.38 0.44 2.25 16 19 N -0.70 -8.82 5.44 -344.40 -1.87 -10.70 16 20 C 0.35 5.56 7.50 133.09 1.00 6.56 16 21 N -0.50 -7.53 9.73 -192.42 -1.87 -9.40 16 22 C 0.11 0.94 11.21 84.58 0.95 1.89 16 23 C 0.01 0.13 11.21 84.58 0.95 1.08 16 24 N -0.46 -7.93 10.50 -195.80 -2.06 -9.99 16 25 C 0.17 3.02 8.47 84.99 0.72 3.74 16 26 F -0.12 -2.17 16.68 44.97 0.75 -1.42 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.66 7.18 -2.39 -0.02 0.65 16 29 H 0.07 0.56 7.18 -2.38 -0.02 0.54 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.42 6.41 7.65 -92.71 -0.71 5.70 16 33 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 34 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 35 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.42 4.12 7.14 -92.71 -0.66 3.45 16 39 H 0.22 0.10 8.06 -2.91 -0.02 0.07 16 40 H 0.21 0.32 8.06 -2.91 -0.02 0.30 16 Total: -1.00 -81.75 363.64 0.67 -81.07 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -0.28 Total: 12.06 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 7.35 Total: 2.22 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -7.96 Total: -103.95 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.67 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.75 Total: -1.42 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -81.75 0.67 -81.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103881239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.182 kcal (2) G-P(sol) polarization free energy of solvation -81.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds