Wall clock time and date at job start Tue Mar 31 2020 16:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47024 * 2 1 4 4 C 1.52996 * 109.46951 * 120.00414 * 2 1 3 5 5 N 1.46496 * 109.47409 * 294.99546 * 4 2 1 6 6 C 1.34771 * 120.00304 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00345 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00126 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.47092 * 180.02562 * 8 6 5 10 10 C 1.76205 * 99.99780 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99951 * 0.02562 * 10 9 8 12 12 C 1.38801 * 119.99806 * 179.97438 * 10 9 8 13 13 N 1.31628 * 119.99815 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00012 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47224 * 89.99638 * 14 12 10 16 16 H 1.48504 * 109.47304 * 210.00108 * 14 12 10 17 17 H 1.48503 * 109.47463 * 329.99990 * 14 12 10 18 18 C 1.52998 * 109.46895 * 240.00291 * 2 1 3 19 19 N 1.46508 * 109.47240 * 64.99885 * 18 2 1 20 20 C 1.39154 * 119.99764 * 179.97438 * 19 18 2 21 21 C 1.39205 * 120.06694 * 0.02562 * 20 19 18 22 22 N 1.32003 * 119.93255 * 179.97438 * 21 20 19 23 23 C 1.32399 * 120.06013 * 0.02562 * 22 21 20 24 24 F 1.35099 * 119.93996 * 179.97438 * 23 22 21 25 25 C 1.38474 * 120.11887 * 359.97438 * 23 22 21 26 26 N 1.32211 * 120.06701 * 359.97438 * 25 23 22 27 27 H 1.09002 * 109.47115 * 59.99612 * 1 2 3 28 28 H 1.08995 * 109.47243 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46756 * 300.00205 * 1 2 3 30 30 H 1.08999 * 109.46970 * 54.99943 * 4 2 1 31 31 H 1.09000 * 109.47147 * 174.99758 * 4 2 1 32 32 H 0.97001 * 119.99702 * 0.02562 * 5 4 2 33 33 H 1.09003 * 109.47101 * 300.00390 * 8 6 5 34 34 H 1.09000 * 109.46986 * 59.99916 * 8 6 5 35 35 H 0.96999 * 119.99782 * 180.02562 * 13 12 10 36 36 H 1.08997 * 109.47246 * 305.00478 * 18 2 1 37 37 H 1.08998 * 109.47606 * 185.00324 * 18 2 1 38 38 H 0.96998 * 119.99860 * 0.02562 * 19 18 2 39 39 H 1.08006 * 120.03202 * 359.95708 * 21 20 19 40 40 H 1.08001 * 119.96322 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0352 2.4423 6 6 1.9965 -0.4133 3.6658 7 8 2.6272 -1.4430 3.7791 8 6 1.5974 0.3647 4.8933 9 16 2.2021 -0.4879 6.3710 10 6 1.6113 0.6068 7.6190 11 1 1.0573 1.4918 7.3429 12 6 1.8570 0.3310 8.9570 13 7 1.4152 1.1485 9.8893 14 14 2.8146 -1.2001 9.4345 15 1 4.2636 -0.8801 9.4910 16 1 2.3598 -1.6731 10.7667 17 1 2.5819 -2.2644 8.4254 18 6 2.0400 -0.7212 -1.2493 19 7 1.6524 0.0355 -2.4424 20 6 2.0075 -0.4275 -3.7057 21 6 2.7306 -1.6097 -3.8374 22 7 3.0657 -2.0467 -5.0371 23 6 2.7151 -1.3615 -6.1143 24 9 3.0598 -1.8108 -7.3409 25 6 1.9958 -0.1852 -5.9860 26 7 1.6567 0.2564 -4.7869 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6053 -1.7198 1.2950 31 1 3.1263 -0.7996 1.2055 32 1 1.1484 0.8589 2.3518 33 1 2.0313 1.3636 4.8473 34 1 0.5110 0.4421 4.9370 35 1 1.5872 0.9560 10.8243 36 1 1.6053 -1.7197 -1.2953 37 1 3.1263 -0.7995 -1.2057 38 1 1.1488 0.8596 -2.3517 39 1 3.0174 -2.1686 -2.9588 40 1 1.7107 0.3715 -6.8665 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103881242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:53 Heat of formation + Delta-G solvation = -31.803415 kcal Electronic energy + Delta-G solvation = -23565.818700 eV Core-core repulsion = 19649.622610 eV Total energy + Delta-G solvation = -3916.196090 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 3.82 seconds Orbital eigenvalues (eV) -49.35185 -41.53262 -39.59468 -38.01777 -35.63936 -34.65558 -32.90272 -32.47457 -30.17280 -29.38365 -27.38852 -25.98582 -25.62195 -25.23099 -23.44617 -21.11285 -20.59418 -18.95618 -18.45411 -18.11949 -17.79308 -16.75804 -16.57378 -16.37617 -15.97670 -15.51512 -15.36893 -15.26807 -14.99340 -14.62603 -14.33813 -14.09639 -13.91172 -13.77510 -13.37002 -13.35316 -13.11021 -12.82678 -12.22560 -12.20870 -11.92979 -11.77926 -11.60396 -11.43143 -11.30310 -11.04126 -10.71966 -10.65277 -9.89840 -9.81219 -9.63216 -9.11810 -9.02950 -8.55041 -8.41361 -6.96480 -6.32602 -4.04889 0.23418 0.55667 2.21842 2.71769 2.88414 3.00612 3.06699 3.25054 3.30693 3.47267 3.58251 3.69458 3.83326 4.14037 4.19711 4.25373 4.29663 4.35352 4.58349 4.68659 4.79969 4.86363 4.96974 4.99449 5.06560 5.17360 5.32733 5.34677 5.47452 5.67004 5.70005 5.70709 5.76503 5.94763 6.00500 6.38947 6.70180 6.74150 7.21572 7.48006 7.90324 8.37527 8.38942 9.13505 10.76577 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.044792 B = 0.001605 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.964611 B =17440.795301 C =17922.886888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 H 0.088 0.912 4 C 0.129 3.871 5 N -0.736 5.736 6 C 0.531 3.469 7 O -0.518 6.518 8 C -0.125 4.125 9 S -0.141 6.141 10 C -0.523 4.523 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.126 3.874 19 N -0.706 5.706 20 C 0.350 3.650 21 C 0.031 3.969 22 N -0.430 5.430 23 C 0.182 3.818 24 F -0.109 7.109 25 C 0.099 3.901 26 N -0.481 5.481 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.400 0.600 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.271 0.729 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.411 0.589 39 H 0.177 0.823 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.428 -0.692 -30.671 30.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.133 4.133 3 H 0.107 0.893 4 C 0.004 3.996 5 N -0.391 5.391 6 C 0.317 3.683 7 O -0.392 6.392 8 C -0.275 4.275 9 S 0.085 5.915 10 C -0.670 4.670 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.516 5.516 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C 0.002 3.998 19 N -0.339 5.339 20 C 0.110 3.890 21 C -0.139 4.139 22 N -0.148 5.148 23 C 0.025 3.975 24 F -0.089 7.089 25 C -0.064 4.064 26 N -0.203 5.203 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.234 0.766 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.248 0.752 39 H 0.193 0.807 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.320 -2.506 -30.181 30.287 hybrid contribution -0.742 1.363 0.062 1.553 sum -1.062 -1.143 -30.119 30.159 Atomic orbital electron populations 1.21908 0.93693 1.03010 1.02327 1.21554 0.97398 1.00965 0.93336 0.89338 1.21168 1.00326 0.95416 0.82701 1.45913 1.59637 1.28219 1.05363 1.20284 0.78708 0.85457 0.83844 1.90710 1.38423 1.23881 1.86205 1.23280 1.05108 1.02983 0.96162 1.84804 1.74528 1.35514 0.96659 1.22313 1.41619 1.11167 0.91941 0.89386 1.24713 0.94595 0.96710 0.95255 1.69936 1.44351 1.36559 1.00761 0.86735 0.81003 0.84319 0.79791 1.19196 1.19909 1.15926 1.21529 1.00429 0.95417 0.82450 1.44499 1.60149 1.28321 1.00934 1.19371 0.91619 0.90873 0.87093 1.22962 1.00631 0.95454 0.94860 1.67581 1.17309 1.31570 0.98322 1.18791 1.02615 0.94516 0.81539 1.91628 1.90696 1.89368 1.37192 1.23288 0.94116 0.92956 0.96071 1.68016 1.22731 1.32171 0.97353 0.92321 0.91823 0.91675 0.91011 0.91104 0.76591 0.88484 0.88440 0.91911 0.90564 0.90592 0.75218 0.80657 0.80181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 8.94 37.16 0.33 -0.36 16 2 C -0.11 -0.50 2.46 -90.62 -0.22 -0.73 16 3 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 4 C 0.13 1.03 5.06 -4.05 -0.02 1.00 16 5 N -0.74 -7.64 5.28 -60.30 -0.32 -7.95 16 6 C 0.53 8.56 7.85 -10.99 -0.09 8.48 16 7 O -0.52 -10.43 15.86 5.56 0.09 -10.34 16 8 C -0.12 -2.26 6.16 36.01 0.22 -2.04 16 9 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 10 C -0.52 -14.75 10.04 30.94 0.31 -14.44 16 11 H 0.09 2.59 8.03 -52.49 -0.42 2.16 16 12 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 13 N -0.88 -26.15 13.97 55.49 0.78 -25.38 16 14 Si 0.86 21.42 27.74 -169.99 -4.71 16.70 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 18 C 0.13 0.48 4.30 -4.04 -0.02 0.46 16 19 N -0.71 -3.37 5.46 -60.29 -0.33 -3.69 16 20 C 0.35 2.42 7.67 -154.63 -1.19 1.23 16 21 C 0.03 0.22 10.49 -17.12 -0.18 0.04 16 22 N -0.43 -4.04 10.50 -13.24 -0.14 -4.18 16 23 C 0.18 1.55 8.43 -17.22 -0.15 1.41 16 24 F -0.11 -0.97 17.29 2.25 0.04 -0.93 16 25 C 0.10 0.66 11.20 -17.30 -0.19 0.47 16 26 N -0.48 -3.69 10.53 -12.16 -0.13 -3.82 16 27 H 0.06 0.22 7.18 -51.93 -0.37 -0.15 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.32 7.18 -51.93 -0.37 -0.05 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.40 3.06 7.65 -40.82 -0.31 2.74 16 33 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16 34 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.08 0.26 7.94 -51.93 -0.41 -0.15 16 37 H 0.08 0.26 7.94 -51.93 -0.41 -0.15 16 38 H 0.41 1.74 7.78 -40.82 -0.32 1.42 16 39 H 0.18 0.84 6.73 -52.48 -0.35 0.48 16 40 H 0.18 0.63 8.06 -52.49 -0.42 0.20 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -35.33 359.88 -7.67 -43.00 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -5.09 Total: -1.56 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.28 Total: -1.81 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.14 Total: -45.02 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.04 Total: -0.93 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.70 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.33 -7.67 -43.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103881242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.193 kcal (2) G-P(sol) polarization free energy of solvation -35.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.82 seconds