Wall clock time and date at job start Tue Mar 31 2020 16:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47024 * 2 1 4 4 C 1.52996 * 109.46951 * 120.00414 * 2 1 3 5 5 N 1.46496 * 109.47409 * 294.99546 * 4 2 1 6 6 C 1.34771 * 120.00304 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00345 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00126 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.47092 * 180.02562 * 8 6 5 10 10 C 1.76205 * 99.99780 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99951 * 0.02562 * 10 9 8 12 12 C 1.38801 * 119.99806 * 179.97438 * 10 9 8 13 13 N 1.31628 * 119.99815 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00012 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47224 * 89.99638 * 14 12 10 16 16 H 1.48504 * 109.47304 * 210.00108 * 14 12 10 17 17 H 1.48503 * 109.47463 * 329.99990 * 14 12 10 18 18 C 1.52998 * 109.46895 * 240.00291 * 2 1 3 19 19 N 1.46508 * 109.47240 * 64.99885 * 18 2 1 20 20 C 1.39154 * 119.99764 * 179.97438 * 19 18 2 21 21 C 1.39205 * 120.06694 * 0.02562 * 20 19 18 22 22 N 1.32003 * 119.93255 * 179.97438 * 21 20 19 23 23 C 1.32399 * 120.06013 * 0.02562 * 22 21 20 24 24 F 1.35099 * 119.93996 * 179.97438 * 23 22 21 25 25 C 1.38474 * 120.11887 * 359.97438 * 23 22 21 26 26 N 1.32211 * 120.06701 * 359.97438 * 25 23 22 27 27 H 1.09002 * 109.47115 * 59.99612 * 1 2 3 28 28 H 1.08995 * 109.47243 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46756 * 300.00205 * 1 2 3 30 30 H 1.08999 * 109.46970 * 54.99943 * 4 2 1 31 31 H 1.09000 * 109.47147 * 174.99758 * 4 2 1 32 32 H 0.97001 * 119.99702 * 0.02562 * 5 4 2 33 33 H 1.09003 * 109.47101 * 300.00390 * 8 6 5 34 34 H 1.09000 * 109.46986 * 59.99916 * 8 6 5 35 35 H 0.96999 * 119.99782 * 180.02562 * 13 12 10 36 36 H 1.08997 * 109.47246 * 305.00478 * 18 2 1 37 37 H 1.08998 * 109.47606 * 185.00324 * 18 2 1 38 38 H 0.96998 * 119.99860 * 0.02562 * 19 18 2 39 39 H 1.08006 * 120.03202 * 359.95708 * 21 20 19 40 40 H 1.08001 * 119.96322 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0352 2.4423 6 6 1.9965 -0.4133 3.6658 7 8 2.6272 -1.4430 3.7791 8 6 1.5974 0.3647 4.8933 9 16 2.2021 -0.4879 6.3710 10 6 1.6113 0.6068 7.6190 11 1 1.0573 1.4918 7.3429 12 6 1.8570 0.3310 8.9570 13 7 1.4152 1.1485 9.8893 14 14 2.8146 -1.2001 9.4345 15 1 4.2636 -0.8801 9.4910 16 1 2.3598 -1.6731 10.7667 17 1 2.5819 -2.2644 8.4254 18 6 2.0400 -0.7212 -1.2493 19 7 1.6524 0.0355 -2.4424 20 6 2.0075 -0.4275 -3.7057 21 6 2.7306 -1.6097 -3.8374 22 7 3.0657 -2.0467 -5.0371 23 6 2.7151 -1.3615 -6.1143 24 9 3.0598 -1.8108 -7.3409 25 6 1.9958 -0.1852 -5.9860 26 7 1.6567 0.2564 -4.7869 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6053 -1.7198 1.2950 31 1 3.1263 -0.7996 1.2055 32 1 1.1484 0.8589 2.3518 33 1 2.0313 1.3636 4.8473 34 1 0.5110 0.4421 4.9370 35 1 1.5872 0.9560 10.8243 36 1 1.6053 -1.7197 -1.2953 37 1 3.1263 -0.7995 -1.2057 38 1 1.1488 0.8596 -2.3517 39 1 3.0174 -2.1686 -2.9588 40 1 1.7107 0.3715 -6.8665 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103881242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:49 Heat of formation + Delta-G solvation = -58.367679 kcal Electronic energy + Delta-G solvation = -23566.970613 eV Core-core repulsion = 19649.622610 eV Total energy + Delta-G solvation = -3917.348003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.95116 -42.04648 -40.71278 -38.62692 -36.35908 -35.25990 -34.66559 -33.70878 -31.14067 -30.22061 -27.93082 -27.76869 -26.55295 -25.83954 -23.98414 -21.81373 -21.55281 -19.93194 -19.42108 -18.99658 -18.54100 -17.80059 -17.34849 -17.28571 -17.04669 -16.77205 -16.27494 -16.06943 -15.82916 -15.59500 -15.29554 -14.99012 -14.83462 -14.71866 -14.50490 -14.35206 -13.90073 -13.75272 -13.36407 -13.33097 -13.00339 -12.77503 -12.67036 -12.55378 -12.19812 -12.14829 -11.85565 -11.84824 -11.16421 -11.15207 -10.99942 -10.52092 -10.34755 -10.09748 -8.98197 -8.86847 -8.50941 -6.21460 -0.26689 0.00148 1.00806 1.32221 1.47542 1.56104 1.59996 1.79235 2.24961 2.32553 2.49106 2.54190 2.73544 2.87596 3.19793 3.41142 3.66544 3.73626 3.82482 3.87720 3.97759 4.11146 4.25607 4.39848 4.46066 4.49893 4.55085 4.65690 4.80092 4.91372 4.97226 5.14359 5.24164 5.36004 5.46835 5.56760 5.71204 6.12096 6.22494 6.27955 6.48833 6.74923 6.94533 7.22601 8.61336 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.044792 B = 0.001605 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.964611 B =17440.795301 C =17922.886888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.097 4.097 3 H 0.101 0.899 4 C 0.125 3.875 5 N -0.710 5.710 6 C 0.535 3.465 7 O -0.563 6.563 8 C -0.113 4.113 9 S -0.177 6.177 10 C -0.530 4.530 11 H 0.062 0.938 12 C 0.046 3.954 13 N -0.917 5.917 14 Si 0.914 3.086 15 H -0.263 1.263 16 H -0.260 1.260 17 H -0.236 1.236 18 C 0.125 3.875 19 N -0.694 5.694 20 C 0.351 3.649 21 C 0.026 3.974 22 N -0.458 5.458 23 C 0.158 3.842 24 F -0.118 7.118 25 C 0.109 3.891 26 N -0.497 5.497 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.416 0.584 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.276 0.724 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.415 0.585 39 H 0.196 0.804 40 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 -0.522 -32.057 32.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.116 4.116 3 H 0.119 0.881 4 C 0.001 3.999 5 N -0.364 5.364 6 C 0.321 3.679 7 O -0.441 6.441 8 C -0.264 4.264 9 S 0.049 5.951 10 C -0.677 4.677 11 H 0.081 0.919 12 C -0.160 4.160 13 N -0.555 5.555 14 Si 0.736 3.264 15 H -0.187 1.187 16 H -0.185 1.185 17 H -0.160 1.160 18 C 0.001 3.999 19 N -0.327 5.327 20 C 0.110 3.890 21 C -0.144 4.144 22 N -0.177 5.177 23 C 0.001 3.999 24 F -0.098 7.098 25 C -0.054 4.054 26 N -0.220 5.220 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.254 0.746 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.253 0.747 39 H 0.213 0.787 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.504 -2.290 -31.601 31.688 hybrid contribution -0.773 1.415 0.391 1.659 sum -1.277 -0.875 -31.210 31.249 Atomic orbital electron populations 1.21920 0.93510 1.02795 1.02775 1.21385 0.97287 1.01157 0.91732 0.88064 1.21344 1.00374 0.95395 0.82745 1.45672 1.57958 1.28480 1.04275 1.19883 0.78607 0.84672 0.84776 1.90701 1.40827 1.25709 1.86874 1.23286 1.05959 1.03148 0.93982 1.84720 1.75114 1.36157 0.99081 1.22478 1.40968 1.10928 0.93338 0.91936 1.25562 0.95544 0.99478 0.95385 1.70016 1.45774 1.38359 1.01360 0.85870 0.79765 0.80896 0.79861 1.18743 1.18477 1.15976 1.21587 1.01108 0.95551 0.81643 1.44499 1.59445 1.28309 1.00427 1.19505 0.91200 0.90727 0.87591 1.23279 1.00535 0.95783 0.94806 1.67521 1.18245 1.32644 0.99256 1.19003 1.04090 0.95547 0.81224 1.91596 1.90949 1.89584 1.37626 1.23662 0.92737 0.92199 0.96761 1.68091 1.23481 1.32604 0.97779 0.91230 0.92407 0.91923 0.91502 0.91313 0.74624 0.86867 0.86835 0.91412 0.89736 0.89662 0.74672 0.78735 0.77411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.94 71.98 0.64 -0.28 16 2 C -0.10 -0.54 2.46 -10.79 -0.03 -0.57 16 3 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 4 C 0.13 1.66 5.06 86.38 0.44 2.10 16 5 N -0.71 -12.78 5.28 -463.08 -2.45 -15.22 16 6 C 0.54 16.28 7.85 87.66 0.69 16.97 16 7 O -0.56 -22.08 15.86 -3.03 -0.05 -22.13 16 8 C -0.11 -3.92 6.16 71.24 0.44 -3.48 16 9 S -0.18 -8.64 18.55 -56.49 -1.05 -9.69 16 10 C -0.53 -30.15 10.04 67.95 0.68 -29.46 16 11 H 0.06 3.75 8.03 -2.91 -0.02 3.72 16 12 C 0.05 2.64 5.50 84.86 0.47 3.10 16 13 N -0.92 -55.08 13.97 21.65 0.30 -54.77 16 14 Si 0.91 44.22 27.74 68.60 1.90 46.13 16 15 H -0.26 -12.41 7.11 99.48 0.71 -11.71 16 16 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.24 -11.35 6.74 99.48 0.67 -10.68 16 18 C 0.13 0.57 4.30 86.38 0.37 0.94 16 19 N -0.69 -4.67 5.46 -344.67 -1.88 -6.55 16 20 C 0.35 4.14 7.67 132.95 1.02 5.16 16 21 C 0.03 0.33 10.49 84.90 0.89 1.22 16 22 N -0.46 -8.38 10.50 -195.81 -2.06 -10.43 16 23 C 0.16 2.62 8.43 84.66 0.71 3.34 16 24 F -0.12 -2.10 17.29 44.97 0.78 -1.32 16 25 C 0.11 1.32 11.20 84.69 0.95 2.27 16 26 N -0.50 -6.75 10.53 -192.40 -2.03 -8.78 16 27 H 0.07 0.30 7.18 -2.39 -0.02 0.29 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.43 7.18 -2.39 -0.02 0.41 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.42 4.92 7.65 -92.71 -0.71 4.22 16 33 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 35 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.08 0.32 7.94 -2.39 -0.02 0.30 16 37 H 0.09 0.31 7.94 -2.39 -0.02 0.29 16 38 H 0.42 2.23 7.78 -92.71 -0.72 1.50 16 39 H 0.20 1.47 6.73 -2.91 -0.02 1.45 16 40 H 0.21 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -77.60 359.88 0.38 -77.22 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -0.37 Total: 4.23 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 7.27 Total: 1.32 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -8.11 Total: -95.76 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.78 Total: -1.32 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.90 Total: 46.13 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.05 Total: -9.69 kcal Total: -77.60 0.38 -77.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103881242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.851 kcal (2) G-P(sol) polarization free energy of solvation -77.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds