Wall clock time and date at job start Tue Mar 31 2020 16:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 S 1.81000 * 109.47389 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99715 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00516 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99710 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00163 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00011 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46661 * 60.00586 * 14 12 10 16 16 H 1.48501 * 109.47391 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47355 * 300.00441 * 14 12 10 18 18 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 19 19 N 1.46500 * 109.47129 * 65.00299 * 18 2 1 20 20 C 1.38569 * 119.99759 * 179.97438 * 19 18 2 21 21 C 1.39464 * 120.51622 * 359.97438 * 20 19 18 22 22 C 1.38475 * 118.30912 * 179.97438 * 21 20 19 23 23 F 1.35097 * 120.42479 * 179.97438 * 22 21 20 24 24 N 1.32783 * 119.13902 * 0.02562 * 22 21 20 25 25 C 1.31753 * 120.96787 * 359.97438 * 24 22 21 26 26 N 1.31769 * 121.85888 * 359.73758 * 25 24 22 27 27 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 28 28 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 29 29 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 31 31 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 32 32 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 33 33 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 34 34 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 35 35 H 0.96991 * 119.99795 * 179.97438 * 13 12 10 36 36 H 1.09005 * 109.46502 * 184.99774 * 18 2 1 37 37 H 1.08996 * 109.47343 * 304.99842 * 18 2 1 38 38 H 0.97004 * 120.00029 * 359.97438 * 19 18 2 39 39 H 1.07993 * 120.84091 * 359.96192 * 21 20 19 40 40 H 1.07995 * 119.07532 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9912 -0.4163 3.6661 7 8 2.6212 -1.4465 3.7795 8 6 1.5872 0.3586 4.8939 9 16 2.1855 -0.4977 6.3720 10 6 1.5910 0.5947 7.6201 11 1 1.0389 1.4809 7.3439 12 6 1.8314 0.3158 8.9584 13 7 2.5038 -0.7645 9.2951 14 14 1.2018 1.4743 10.2816 15 1 -0.2778 1.5676 10.1947 16 1 1.5879 0.9555 11.6184 17 1 1.7952 2.8211 10.0836 18 6 2.0400 -0.7213 -1.2493 19 7 1.6525 0.0354 -2.4424 20 6 2.0061 -0.4256 -3.7004 21 6 2.7313 -1.6083 -3.8431 22 6 3.0599 -2.0270 -5.1215 23 9 3.7618 -3.1659 -5.3092 24 7 2.6769 -1.2939 -6.1603 25 6 1.9925 -0.1812 -5.9894 26 7 1.6543 0.2502 -4.7911 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1264 -0.7995 1.2056 31 1 1.6054 -1.7198 1.2950 32 1 1.1483 0.8591 2.3518 33 1 2.0215 1.3575 4.8522 34 1 0.5007 0.4364 4.9332 35 1 2.6721 -0.9592 10.2303 36 1 3.1264 -0.7994 -1.2056 37 1 1.6054 -1.7198 -1.2953 38 1 1.1483 0.8592 -2.3518 39 1 3.0292 -2.1828 -2.9786 40 1 1.6962 0.3912 -6.8559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103881402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:24 Heat of formation + Delta-G solvation = -35.232071 kcal Electronic energy + Delta-G solvation = -23613.216887 eV Core-core repulsion = 19696.872120 eV Total energy + Delta-G solvation = -3916.344767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.57191 -41.34474 -39.50223 -38.06952 -35.72775 -33.59851 -32.67440 -32.46320 -31.00574 -29.39986 -27.44330 -25.96763 -25.43350 -24.72117 -23.41445 -21.07861 -20.48522 -19.15598 -18.70212 -17.87411 -16.77025 -16.63966 -16.47899 -16.15583 -16.05113 -15.86581 -15.47502 -15.20348 -14.83943 -14.72410 -14.56766 -14.15867 -13.93281 -13.83159 -13.44050 -13.26215 -13.02644 -12.60998 -12.19975 -11.79399 -11.67438 -11.49467 -11.33096 -11.22902 -11.08480 -11.06884 -10.80380 -10.29749 -9.96205 -9.86728 -9.51123 -9.10532 -9.01067 -8.85241 -8.29064 -6.54629 -6.25198 -3.96377 0.37527 0.71154 2.24259 2.91782 2.98778 3.00881 3.20650 3.24780 3.24880 3.27690 3.62057 3.70492 4.06230 4.16878 4.19808 4.26814 4.34843 4.55414 4.68919 4.84094 4.98846 5.01417 5.06749 5.08587 5.09959 5.32450 5.36313 5.50403 5.56084 5.68262 5.75637 5.79212 5.83194 6.03672 6.07458 6.46464 6.52510 6.86245 7.55280 7.58307 7.59934 8.31187 8.51347 9.19990 10.82151 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.038008 B = 0.001624 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.505082 B =17238.367153 C =17826.100012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 H 0.088 0.912 4 C 0.129 3.871 5 N -0.738 5.738 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.274 1.274 18 C 0.125 3.875 19 N -0.699 5.699 20 C 0.463 3.537 21 C -0.318 4.318 22 C 0.385 3.615 23 F -0.101 7.101 24 N -0.594 5.594 25 C 0.377 3.623 26 N -0.585 5.585 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.398 0.602 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.269 0.731 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.413 0.587 39 H 0.155 0.845 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.522 3.224 -28.333 28.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.133 4.133 3 H 0.106 0.894 4 C 0.004 3.996 5 N -0.394 5.394 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.305 4.305 9 S 0.167 5.833 10 C -0.686 4.686 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C 0.001 3.999 19 N -0.331 5.331 20 C 0.219 3.781 21 C -0.348 4.348 22 C 0.227 3.773 23 F -0.080 7.080 24 N -0.320 5.320 25 C 0.087 3.913 26 N -0.310 5.310 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.232 0.768 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.250 0.750 39 H 0.173 0.827 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.549 1.688 -28.536 28.699 hybrid contribution -1.162 1.930 1.342 2.622 sum -3.711 3.618 -27.194 27.683 Atomic orbital electron populations 1.21910 0.93709 1.03015 1.02294 1.21567 0.97384 1.00939 0.93393 0.89369 1.21148 1.00289 0.95417 0.82750 1.45955 1.59914 1.28098 1.05393 1.20319 0.78656 0.85446 0.83747 1.90713 1.38283 1.23812 1.86179 1.23532 1.04794 1.03512 0.98614 1.85406 1.72830 1.32972 0.92087 1.22823 1.41666 1.11313 0.92753 0.90964 1.24994 0.94832 0.95782 0.97935 1.70003 1.37418 1.24510 1.18310 0.86221 0.79193 0.80318 0.79749 1.19935 1.20781 1.19940 1.21551 1.00554 0.95455 0.82350 1.44550 1.59033 1.28103 1.01402 1.18245 0.86140 0.87217 0.86524 1.21831 1.12217 1.02190 0.98550 1.18013 0.87658 0.82326 0.89272 1.91673 1.74680 1.45604 1.96029 1.67855 1.19562 1.09930 1.34665 1.24542 0.85976 0.87187 0.93559 1.68024 1.28570 1.35830 0.98623 0.91645 0.92361 0.91824 0.91174 0.91080 0.76761 0.89206 0.89208 0.92088 0.90519 0.90495 0.74961 0.82692 0.77607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.94 37.16 0.33 -0.44 16 2 C -0.11 -0.58 2.46 -90.62 -0.22 -0.81 16 3 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 4 C 0.13 1.14 5.06 -4.04 -0.02 1.12 16 5 N -0.74 -8.32 5.28 -60.30 -0.32 -8.64 16 6 C 0.53 9.18 7.85 -10.98 -0.09 9.10 16 7 O -0.52 -11.10 15.86 5.55 0.09 -11.01 16 8 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 11 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 14 Si 0.92 21.05 29.55 -169.99 -5.02 16.02 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 C 0.13 0.59 4.32 -4.04 -0.02 0.57 16 19 N -0.70 -3.77 5.44 -60.29 -0.33 -4.10 16 20 C 0.46 3.46 7.71 -154.76 -1.19 2.26 16 21 C -0.32 -2.38 9.39 -39.04 -0.37 -2.75 16 22 C 0.39 3.49 8.50 -17.05 -0.14 3.34 16 23 F -0.10 -0.95 17.30 2.25 0.04 -0.91 16 24 N -0.59 -5.48 10.44 -14.98 -0.16 -5.64 16 25 C 0.38 2.70 12.28 -92.21 -1.13 1.57 16 26 N -0.59 -4.66 10.47 -13.84 -0.14 -4.80 16 27 H 0.06 0.36 7.18 -51.93 -0.37 -0.02 16 28 H 0.06 0.25 7.18 -51.93 -0.37 -0.13 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.40 3.34 7.65 -40.82 -0.31 3.03 16 33 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 34 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.08 0.35 7.97 -51.93 -0.41 -0.07 16 37 H 0.08 0.35 7.97 -51.93 -0.41 -0.07 16 38 H 0.41 1.91 7.78 -40.82 -0.32 1.59 16 39 H 0.16 0.89 6.86 -52.49 -0.36 0.53 16 40 H 0.21 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -35.46 362.74 -9.35 -44.82 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.07 Total: -0.87 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.43 Total: -1.49 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.21 Total: -48.24 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.04 Total: -0.91 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.46 -9.35 -44.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103881402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.585 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds