Wall clock time and date at job start Tue Mar 31 2020 16:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 S 1.81000 * 109.47389 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99715 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00516 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99710 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00163 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00011 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46661 * 60.00586 * 14 12 10 16 16 H 1.48501 * 109.47391 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47355 * 300.00441 * 14 12 10 18 18 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 19 19 N 1.46500 * 109.47129 * 65.00299 * 18 2 1 20 20 C 1.38569 * 119.99759 * 179.97438 * 19 18 2 21 21 C 1.39464 * 120.51622 * 359.97438 * 20 19 18 22 22 C 1.38475 * 118.30912 * 179.97438 * 21 20 19 23 23 F 1.35097 * 120.42479 * 179.97438 * 22 21 20 24 24 N 1.32783 * 119.13902 * 0.02562 * 22 21 20 25 25 C 1.31753 * 120.96787 * 359.97438 * 24 22 21 26 26 N 1.31769 * 121.85888 * 359.73758 * 25 24 22 27 27 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 28 28 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 29 29 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 31 31 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 32 32 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 33 33 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 34 34 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 35 35 H 0.96991 * 119.99795 * 179.97438 * 13 12 10 36 36 H 1.09005 * 109.46502 * 184.99774 * 18 2 1 37 37 H 1.08996 * 109.47343 * 304.99842 * 18 2 1 38 38 H 0.97004 * 120.00029 * 359.97438 * 19 18 2 39 39 H 1.07993 * 120.84091 * 359.96192 * 21 20 19 40 40 H 1.07995 * 119.07532 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9912 -0.4163 3.6661 7 8 2.6212 -1.4465 3.7795 8 6 1.5872 0.3586 4.8939 9 16 2.1855 -0.4977 6.3720 10 6 1.5910 0.5947 7.6201 11 1 1.0389 1.4809 7.3439 12 6 1.8314 0.3158 8.9584 13 7 2.5038 -0.7645 9.2951 14 14 1.2018 1.4743 10.2816 15 1 -0.2778 1.5676 10.1947 16 1 1.5879 0.9555 11.6184 17 1 1.7952 2.8211 10.0836 18 6 2.0400 -0.7213 -1.2493 19 7 1.6525 0.0354 -2.4424 20 6 2.0061 -0.4256 -3.7004 21 6 2.7313 -1.6083 -3.8431 22 6 3.0599 -2.0270 -5.1215 23 9 3.7618 -3.1659 -5.3092 24 7 2.6769 -1.2939 -6.1603 25 6 1.9925 -0.1812 -5.9894 26 7 1.6543 0.2502 -4.7911 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1264 -0.7995 1.2056 31 1 1.6054 -1.7198 1.2950 32 1 1.1483 0.8591 2.3518 33 1 2.0215 1.3575 4.8522 34 1 0.5007 0.4364 4.9332 35 1 2.6721 -0.9592 10.2303 36 1 3.1264 -0.7994 -1.2056 37 1 1.6054 -1.7198 -1.2953 38 1 1.1483 0.8592 -2.3518 39 1 3.0292 -2.1828 -2.9786 40 1 1.6962 0.3912 -6.8559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103881402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:23 Heat of formation + Delta-G solvation = -60.046789 kcal Electronic energy + Delta-G solvation = -23614.292934 eV Core-core repulsion = 19696.872120 eV Total energy + Delta-G solvation = -3917.420814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = -0.51 seconds Orbital eigenvalues (eV) -50.23564 -41.89387 -40.69303 -38.74519 -36.51894 -34.58165 -34.39196 -33.38594 -31.69865 -30.66523 -27.94370 -27.67890 -26.59124 -25.32103 -23.99830 -21.80711 -21.56268 -19.94575 -19.59352 -19.28323 -17.78111 -17.50210 -17.37524 -16.87221 -16.81822 -16.71190 -16.64481 -16.31636 -16.07417 -15.72037 -15.31562 -15.19243 -14.82379 -14.68682 -14.45674 -14.35800 -13.90914 -13.82813 -13.35161 -13.16235 -12.86252 -12.63905 -12.53415 -12.20290 -12.01753 -11.85761 -11.75548 -11.73055 -11.12296 -10.96519 -10.86855 -10.55312 -10.26805 -10.09963 -9.34231 -8.65770 -8.33978 -6.11939 -0.19713 0.13901 1.27475 1.44276 1.47247 1.56202 1.63419 1.76879 2.27540 2.32591 2.39317 2.68727 3.00188 3.21770 3.32967 3.54799 3.70024 3.78184 3.83536 3.99861 4.04650 4.15075 4.31555 4.38809 4.50218 4.53090 4.57015 4.63239 4.77561 4.87577 4.94652 5.10719 5.21543 5.34656 5.42267 5.46483 5.51762 5.98141 6.20137 6.42007 6.51630 7.05849 7.07406 7.26431 8.74849 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.038008 B = 0.001624 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.505082 B =17238.367153 C =17826.100012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 H 0.103 0.897 4 C 0.126 3.874 5 N -0.710 5.710 6 C 0.534 3.466 7 O -0.566 6.566 8 C -0.131 4.131 9 S -0.153 6.153 10 C -0.547 4.547 11 H 0.083 0.917 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.997 3.003 15 H -0.262 1.262 16 H -0.280 1.280 17 H -0.262 1.262 18 C 0.126 3.874 19 N -0.688 5.688 20 C 0.457 3.543 21 C -0.317 4.317 22 C 0.366 3.634 23 F -0.110 7.110 24 N -0.618 5.618 25 C 0.375 3.625 26 N -0.595 5.595 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.416 0.584 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.271 0.729 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.419 0.581 39 H 0.170 0.830 40 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.945 5.585 -29.226 30.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.115 4.115 3 H 0.121 0.879 4 C 0.001 3.999 5 N -0.364 5.364 6 C 0.319 3.681 7 O -0.444 6.444 8 C -0.282 4.282 9 S 0.074 5.926 10 C -0.695 4.695 11 H 0.102 0.898 12 C -0.191 4.191 13 N -0.548 5.548 14 Si 0.819 3.181 15 H -0.186 1.186 16 H -0.205 1.205 17 H -0.187 1.187 18 C 0.002 3.998 19 N -0.319 5.319 20 C 0.212 3.788 21 C -0.347 4.347 22 C 0.209 3.791 23 F -0.089 7.089 24 N -0.344 5.344 25 C 0.087 3.913 26 N -0.321 5.321 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.254 0.746 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.257 0.743 39 H 0.187 0.813 40 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -4.005 4.096 -29.473 30.025 hybrid contribution -0.752 1.222 1.481 2.062 sum -4.756 5.318 -27.993 28.888 Atomic orbital electron populations 1.21922 0.93306 1.02780 1.02944 1.21390 0.97447 1.01144 0.91502 0.87857 1.21311 1.00187 0.95377 0.82995 1.45669 1.58223 1.28369 1.04188 1.20017 0.78485 0.84662 0.84897 1.90703 1.40876 1.25912 1.86946 1.23382 1.05733 1.03415 0.95665 1.85584 1.74308 1.35886 0.96823 1.23182 1.41554 1.11487 0.93287 0.89842 1.26120 0.94841 0.97512 1.00664 1.70175 1.39010 1.26724 1.18842 0.85018 0.78988 0.77990 0.76091 1.18648 1.20513 1.18669 1.21561 1.00972 0.95521 0.81790 1.44510 1.58463 1.28130 1.00820 1.18411 0.86101 0.87226 0.87086 1.21945 1.11948 1.02356 0.98405 1.18260 0.88325 0.82464 0.90053 1.91645 1.75000 1.46097 1.96131 1.67876 1.20578 1.10844 1.35145 1.25202 0.85011 0.86701 0.94387 1.68096 1.28974 1.36067 0.98966 0.91725 0.91009 0.92554 0.91649 0.91826 0.74611 0.87187 0.87178 0.92023 0.89974 0.90026 0.74275 0.81296 0.74540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.94 71.98 0.64 -0.45 16 2 C -0.10 -0.70 2.46 -10.79 -0.03 -0.73 16 3 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 4 C 0.13 1.98 5.06 86.38 0.44 2.42 16 5 N -0.71 -14.37 5.28 -463.07 -2.45 -16.82 16 6 C 0.53 17.91 7.85 87.66 0.69 18.60 16 7 O -0.57 -24.67 15.86 -3.04 -0.05 -24.72 16 8 C -0.13 -4.84 6.16 71.24 0.44 -4.41 16 9 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 10 C -0.55 -30.58 9.50 67.96 0.65 -29.94 16 11 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 12 C 0.01 0.75 5.49 84.86 0.47 1.22 16 13 N -0.91 -55.31 13.22 21.65 0.29 -55.02 16 14 Si 1.00 42.75 29.55 68.60 2.03 44.77 16 15 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 16 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 17 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 18 C 0.13 0.86 4.32 86.38 0.37 1.23 16 19 N -0.69 -5.64 5.44 -344.66 -1.87 -7.52 16 20 C 0.46 6.00 7.71 133.10 1.03 7.02 16 21 C -0.32 -4.39 9.39 22.62 0.21 -4.18 16 22 C 0.37 6.51 8.50 84.61 0.72 7.23 16 23 F -0.11 -2.08 17.30 44.97 0.78 -1.31 16 24 N -0.62 -11.05 10.44 -201.32 -2.10 -13.15 16 25 C 0.38 4.89 12.28 180.90 2.22 7.11 16 26 N -0.60 -8.45 10.47 -197.70 -2.07 -10.52 16 27 H 0.06 0.49 7.18 -2.39 -0.02 0.48 16 28 H 0.07 0.36 7.18 -2.39 -0.02 0.34 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.42 5.56 7.65 -92.71 -0.71 4.85 16 33 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 34 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 35 H 0.27 15.31 8.31 -92.72 -0.77 14.54 16 36 H 0.08 0.54 7.97 -2.38 -0.02 0.52 16 37 H 0.08 0.54 7.97 -2.39 -0.02 0.52 16 38 H 0.42 2.60 7.78 -92.71 -0.72 1.88 16 39 H 0.17 1.71 6.86 -2.91 -0.02 1.69 16 40 H 0.24 1.16 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -79.64 362.74 0.90 -78.75 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -0.34 Total: 9.85 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 7.84 Total: 5.14 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -8.21 Total: -103.04 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.78 Total: -1.31 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -79.64 0.90 -78.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103881402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.700 kcal (2) G-P(sol) polarization free energy of solvation -79.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.51 seconds