Wall clock time and date at job start Tue Mar 31 2020 16:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 5 5 N 1.46499 * 109.46840 * 65.00000 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00071 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47178 * 180.02562 * 8 6 5 10 10 C 1.76198 * 100.00092 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00019 * 359.97438 * 10 9 8 12 12 C 1.38793 * 120.00035 * 180.02562 * 10 9 8 13 13 N 1.31631 * 119.99949 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00227 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47249 * 89.99107 * 14 12 10 16 16 H 1.48494 * 109.47182 * 209.99868 * 14 12 10 17 17 H 1.48501 * 109.46611 * 329.99629 * 14 12 10 18 18 C 1.53006 * 109.47155 * 119.99883 * 2 1 3 19 19 N 1.46500 * 109.47013 * 294.99895 * 18 2 1 20 20 C 1.38532 * 120.00060 * 179.97438 * 19 18 2 21 21 N 1.32458 * 119.18740 * 359.72958 * 20 19 18 22 22 C 1.32300 * 120.76377 * 179.75726 * 21 20 19 23 23 C 1.38786 * 119.16905 * 0.50921 * 22 21 20 24 24 F 1.35096 * 120.74287 * 179.72480 * 23 22 21 25 25 C 1.38778 * 118.50799 * 359.74890 * 23 22 21 26 26 N 1.32304 * 119.17070 * 359.97438 * 25 23 22 27 27 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 29 29 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 30 30 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 31 31 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 32 32 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 33 33 H 1.09002 * 109.47152 * 300.00160 * 8 6 5 34 34 H 1.09001 * 109.46980 * 60.00059 * 8 6 5 35 35 H 0.97005 * 119.99745 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.46746 * 54.99828 * 18 2 1 37 37 H 1.08998 * 109.47205 * 174.99996 * 18 2 1 38 38 H 0.96999 * 120.00220 * 359.97438 * 19 18 2 39 39 H 1.08000 * 120.41552 * 180.27278 * 22 21 20 40 40 H 1.07997 * 120.41741 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 1.9956 -0.4137 -3.6659 7 8 2.6256 -1.4438 -3.7792 8 6 1.5974 0.3649 -4.8933 9 16 2.1993 -0.4893 -6.3712 10 6 1.6101 0.6063 -7.6191 11 1 1.0582 1.4926 -7.3428 12 6 1.8544 0.3298 -8.9571 13 7 2.5266 -0.7507 -9.2938 14 14 1.2303 1.4916 -10.2801 15 1 2.2623 2.5217 -10.5611 16 1 0.9465 0.7241 -11.5192 17 1 -0.0141 2.1527 -9.8113 18 6 2.0400 -0.7213 1.2493 19 7 1.6524 0.0354 2.4424 20 6 2.0051 -0.4260 3.7001 21 7 2.6881 -1.5560 3.8055 22 6 3.0452 -2.0228 4.9908 23 6 2.6861 -1.3184 6.1314 24 9 3.0293 -1.7689 7.3580 25 6 1.9662 -0.1412 5.9838 26 7 1.6467 0.2711 4.7679 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.1263 -0.7996 -1.2055 31 1 1.6053 -1.7198 -1.2951 32 1 1.1488 0.8594 -2.3518 33 1 0.5111 0.4439 -4.9368 34 1 2.0328 1.3631 -4.8474 35 1 2.6977 -0.9437 -10.2289 36 1 1.6053 -1.7198 1.2952 37 1 3.1262 -0.7995 1.2057 38 1 1.1489 0.8595 2.3518 39 1 3.6058 -2.9425 5.0700 40 1 1.6704 0.4312 6.8504 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103881972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:13 Heat of formation + Delta-G solvation = -32.861543 kcal Electronic energy + Delta-G solvation = -23509.790566 eV Core-core repulsion = 19593.548593 eV Total energy + Delta-G solvation = -3916.241974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -49.30567 -41.39712 -39.40568 -37.75300 -35.24923 -34.32089 -32.83553 -32.43989 -30.40624 -29.28705 -27.19245 -25.84522 -25.46045 -25.06062 -23.29271 -20.94332 -20.40320 -18.89399 -18.45781 -17.88188 -17.78663 -16.57206 -16.39334 -16.26348 -15.79123 -15.48941 -15.19907 -14.97162 -14.81491 -14.61900 -14.48025 -13.89530 -13.75358 -13.55262 -13.20660 -13.17881 -12.94725 -12.57874 -12.25789 -12.01482 -11.60538 -11.48890 -11.46565 -11.27991 -11.07493 -11.03697 -10.77398 -10.63761 -9.83122 -9.64996 -9.44784 -9.08464 -8.93255 -8.49669 -8.25208 -6.51501 -6.22926 -3.93678 0.46944 0.47634 2.25983 3.02099 3.07148 3.21393 3.23537 3.27025 3.30883 3.48949 3.55218 3.70084 4.06980 4.19160 4.30849 4.34391 4.38585 4.45156 4.52871 4.99159 5.07606 5.11767 5.12364 5.24944 5.29092 5.41846 5.50252 5.59302 5.64230 5.75391 5.84988 5.86609 5.91027 6.11523 6.13734 6.46329 6.55978 6.85728 7.58155 7.65387 7.70233 8.33809 8.57935 9.22422 10.84472 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.049203 B = 0.001549 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.937321 B =18070.667076 C =18486.469868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 H 0.086 0.914 4 C 0.130 3.870 5 N -0.738 5.738 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.154 4.154 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.142 3.858 19 N -0.689 5.689 20 C 0.558 3.442 21 N -0.542 5.542 22 C 0.176 3.824 23 C -0.078 4.078 24 F -0.128 7.128 25 C 0.175 3.825 26 N -0.549 5.549 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.398 0.602 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.416 0.584 39 H 0.179 0.821 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 2.593 31.150 31.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.135 4.135 3 H 0.104 0.896 4 C 0.005 3.995 5 N -0.393 5.393 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C 0.017 3.983 19 N -0.326 5.326 20 C 0.201 3.799 21 N -0.264 5.264 22 C 0.007 3.993 23 C -0.106 4.106 24 F -0.107 7.107 25 C 0.005 3.995 26 N -0.270 5.270 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.232 0.768 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.254 0.746 39 H 0.196 0.804 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.128 0.963 29.703 29.794 hybrid contribution -1.260 2.292 0.422 2.650 sum -3.388 3.256 30.125 30.489 Atomic orbital electron populations 1.21897 0.93918 1.02917 1.02079 1.21609 0.97221 1.00871 0.93828 0.89616 1.21139 1.00297 0.95382 0.82660 1.45965 1.59783 1.28118 1.05458 1.20306 0.78673 0.85487 0.83757 1.90710 1.38299 1.23846 1.86170 1.23531 1.04806 1.03453 0.98631 1.85408 1.72888 1.32897 0.92149 1.22869 1.41587 1.11220 0.92791 0.90927 1.24990 0.94858 0.95775 0.97931 1.70020 1.37523 1.24520 1.18191 0.86166 0.79081 0.80071 0.80169 1.20269 1.20738 1.19713 1.21332 1.00593 0.95017 0.81317 1.44183 1.59598 1.28006 1.00803 1.19385 0.87735 0.85999 0.86751 1.68028 1.17437 1.14144 1.26767 1.23171 0.92578 0.98136 0.85437 1.19126 1.09156 0.99912 0.82409 1.91518 1.90918 1.88775 1.39488 1.23097 0.89889 0.91329 0.95142 1.67957 1.26535 1.34603 0.97953 0.91886 0.92494 0.91795 0.91187 0.91102 0.76819 0.89232 0.89229 0.92169 0.90615 0.90673 0.74565 0.80365 0.80463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.94 37.15 0.33 -0.60 16 2 C -0.12 -0.76 2.46 -90.62 -0.22 -0.98 16 3 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 4 C 0.13 1.31 5.06 -4.04 -0.02 1.29 16 5 N -0.74 -8.94 5.28 -60.29 -0.32 -9.26 16 6 C 0.53 9.54 7.85 -10.98 -0.09 9.45 16 7 O -0.52 -11.47 15.86 5.56 0.09 -11.38 16 8 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 10 C -0.54 -15.17 9.50 30.94 0.29 -14.87 16 11 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 14 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 C 0.14 0.98 5.04 -4.04 -0.02 0.96 16 19 N -0.69 -4.89 5.44 -62.29 -0.34 -5.23 16 20 C 0.56 4.93 8.43 -322.72 -2.72 2.21 16 21 N -0.54 -4.80 9.58 -13.86 -0.13 -4.93 16 22 C 0.18 1.22 11.29 -17.15 -0.19 1.03 16 23 C -0.08 -0.53 7.38 -39.18 -0.29 -0.82 16 24 F -0.13 -0.90 17.29 2.25 0.04 -0.86 16 25 C 0.18 1.15 11.29 -17.15 -0.19 0.96 16 26 N -0.55 -4.64 10.46 -13.87 -0.14 -4.78 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.29 7.18 -51.93 -0.37 -0.08 16 29 H 0.06 0.40 7.18 -51.93 -0.37 0.03 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.40 3.65 7.66 -40.82 -0.31 3.34 16 33 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 34 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.42 2.42 7.77 -40.82 -0.32 2.10 16 39 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -35.59 364.63 -9.96 -45.55 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.15 Total: 0.45 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.99 Total: -2.16 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.20 Total: -49.49 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.04 Total: -0.86 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.59 -9.96 -45.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103881972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.687 kcal (2) G-P(sol) polarization free energy of solvation -35.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds