Wall clock time and date at job start Tue Mar 31 2020 16:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 5 5 N 1.46499 * 109.46840 * 65.00000 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00071 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47178 * 180.02562 * 8 6 5 10 10 C 1.76198 * 100.00092 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00019 * 359.97438 * 10 9 8 12 12 C 1.38793 * 120.00035 * 180.02562 * 10 9 8 13 13 N 1.31631 * 119.99949 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00227 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47249 * 89.99107 * 14 12 10 16 16 H 1.48494 * 109.47182 * 209.99868 * 14 12 10 17 17 H 1.48501 * 109.46611 * 329.99629 * 14 12 10 18 18 C 1.53006 * 109.47155 * 119.99883 * 2 1 3 19 19 N 1.46500 * 109.47013 * 294.99895 * 18 2 1 20 20 C 1.38532 * 120.00060 * 179.97438 * 19 18 2 21 21 N 1.32458 * 119.18740 * 359.72958 * 20 19 18 22 22 C 1.32300 * 120.76377 * 179.75726 * 21 20 19 23 23 C 1.38786 * 119.16905 * 0.50921 * 22 21 20 24 24 F 1.35096 * 120.74287 * 179.72480 * 23 22 21 25 25 C 1.38778 * 118.50799 * 359.74890 * 23 22 21 26 26 N 1.32304 * 119.17070 * 359.97438 * 25 23 22 27 27 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 29 29 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 30 30 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 31 31 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 32 32 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 33 33 H 1.09002 * 109.47152 * 300.00160 * 8 6 5 34 34 H 1.09001 * 109.46980 * 60.00059 * 8 6 5 35 35 H 0.97005 * 119.99745 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.46746 * 54.99828 * 18 2 1 37 37 H 1.08998 * 109.47205 * 174.99996 * 18 2 1 38 38 H 0.96999 * 120.00220 * 359.97438 * 19 18 2 39 39 H 1.08000 * 120.41552 * 180.27278 * 22 21 20 40 40 H 1.07997 * 120.41741 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 1.9956 -0.4137 -3.6659 7 8 2.6256 -1.4438 -3.7792 8 6 1.5974 0.3649 -4.8933 9 16 2.1993 -0.4893 -6.3712 10 6 1.6101 0.6063 -7.6191 11 1 1.0582 1.4926 -7.3428 12 6 1.8544 0.3298 -8.9571 13 7 2.5266 -0.7507 -9.2938 14 14 1.2303 1.4916 -10.2801 15 1 2.2623 2.5217 -10.5611 16 1 0.9465 0.7241 -11.5192 17 1 -0.0141 2.1527 -9.8113 18 6 2.0400 -0.7213 1.2493 19 7 1.6524 0.0354 2.4424 20 6 2.0051 -0.4260 3.7001 21 7 2.6881 -1.5560 3.8055 22 6 3.0452 -2.0228 4.9908 23 6 2.6861 -1.3184 6.1314 24 9 3.0293 -1.7689 7.3580 25 6 1.9662 -0.1412 5.9838 26 7 1.6467 0.2711 4.7679 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.1263 -0.7996 -1.2055 31 1 1.6053 -1.7198 -1.2951 32 1 1.1488 0.8594 -2.3518 33 1 0.5111 0.4439 -4.9368 34 1 2.0328 1.3631 -4.8474 35 1 2.6977 -0.9437 -10.2289 36 1 1.6053 -1.7198 1.2952 37 1 3.1262 -0.7995 1.2057 38 1 1.1489 0.8595 2.3518 39 1 3.6058 -2.9425 5.0700 40 1 1.6704 0.4312 6.8504 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103881972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:13 Heat of formation + Delta-G solvation = -56.769950 kcal Electronic energy + Delta-G solvation = -23510.827313 eV Core-core repulsion = 19593.548593 eV Total energy + Delta-G solvation = -3917.278720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.83954 -41.94712 -40.68893 -38.53562 -36.13539 -34.87595 -34.57750 -33.79112 -31.26360 -30.44911 -27.86477 -27.63234 -26.48111 -25.73835 -23.89784 -21.80870 -21.52732 -19.89124 -19.37539 -19.00225 -18.39890 -17.75957 -17.34412 -17.07904 -16.87092 -16.75288 -16.28731 -16.06362 -15.81099 -15.48478 -15.40154 -15.01998 -14.75022 -14.40716 -14.35374 -14.06728 -13.88958 -13.74681 -13.33461 -13.15569 -12.88474 -12.82568 -12.61632 -12.25979 -12.18297 -12.06379 -11.87419 -11.71391 -11.18868 -11.13563 -10.96099 -10.26176 -10.21284 -10.10297 -9.05029 -8.65640 -8.33888 -6.11886 -0.07683 -0.04596 1.27578 1.43187 1.47386 1.57146 1.63505 1.72983 2.27569 2.34941 2.67176 2.97558 3.00402 3.06376 3.33300 3.57200 3.74137 3.79427 3.82293 3.85498 3.94454 4.05885 4.31873 4.40233 4.53079 4.54543 4.63277 4.73856 4.77477 4.90037 4.95339 5.14327 5.26972 5.33889 5.42690 5.45974 5.58697 5.95116 6.20576 6.32334 6.51975 7.07568 7.15461 7.26598 8.75273 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.049203 B = 0.001549 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.937321 B =18070.667076 C =18486.469868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 H 0.103 0.897 4 C 0.128 3.872 5 N -0.709 5.709 6 C 0.533 3.467 7 O -0.567 6.567 8 C -0.130 4.130 9 S -0.154 6.154 10 C -0.547 4.547 11 H 0.084 0.916 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.258 1.258 18 C 0.149 3.851 19 N -0.683 5.683 20 C 0.543 3.457 21 N -0.563 5.563 22 C 0.172 3.828 23 C -0.081 4.081 24 F -0.129 7.129 25 C 0.175 3.825 26 N -0.563 5.563 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.417 0.583 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.422 0.578 39 H 0.201 0.799 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.354 4.778 32.507 33.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 H 0.121 0.879 4 C 0.004 3.996 5 N -0.364 5.364 6 C 0.319 3.681 7 O -0.445 6.445 8 C -0.281 4.281 9 S 0.074 5.926 10 C -0.695 4.695 11 H 0.102 0.898 12 C -0.191 4.191 13 N -0.548 5.548 14 Si 0.820 3.180 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.182 1.182 18 C 0.025 3.975 19 N -0.321 5.321 20 C 0.186 3.814 21 N -0.286 5.286 22 C 0.003 3.997 23 C -0.108 4.108 24 F -0.108 7.108 25 C 0.006 3.994 26 N -0.285 5.285 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.254 0.746 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.262 0.738 39 H 0.218 0.782 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.458 3.191 31.121 31.474 hybrid contribution -0.855 1.598 0.200 1.824 sum -4.313 4.789 31.320 31.977 Atomic orbital electron populations 1.21897 0.93184 1.02644 1.02965 1.21426 0.97547 1.01046 0.91586 0.87881 1.21258 0.99988 0.95307 0.83051 1.45669 1.58140 1.28393 1.04173 1.20047 0.78462 0.84711 0.84889 1.90700 1.40890 1.25973 1.86930 1.23376 1.05775 1.03366 0.95582 1.85596 1.74377 1.35815 0.96855 1.23217 1.41557 1.11379 0.93309 0.89835 1.26122 0.94825 0.97528 1.00653 1.70188 1.39053 1.26740 1.18807 0.84953 0.78954 0.77561 0.76507 1.19343 1.20377 1.18158 1.21180 1.00084 0.94782 0.81494 1.44112 1.59508 1.28138 1.00317 1.19637 0.88080 0.86309 0.87346 1.68063 1.18283 1.14587 1.27690 1.23574 0.92241 0.98778 0.85068 1.19160 1.09278 1.00105 0.82306 1.91517 1.90954 1.88817 1.39521 1.23580 0.89027 0.91343 0.95445 1.68016 1.27176 1.34905 0.98397 0.92794 0.91021 0.91486 0.91959 0.92043 0.74579 0.87135 0.87125 0.92021 0.91352 0.91402 0.73806 0.78191 0.77703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.94 71.98 0.64 -0.84 16 2 C -0.10 -1.06 2.46 -10.79 -0.03 -1.09 16 3 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 4 C 0.13 2.44 5.06 86.38 0.44 2.88 16 5 N -0.71 -15.83 5.28 -463.05 -2.45 -18.28 16 6 C 0.53 18.77 7.85 87.66 0.69 19.46 16 7 O -0.57 -25.68 15.86 -3.02 -0.05 -25.73 16 8 C -0.13 -4.95 6.16 71.24 0.44 -4.52 16 9 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 10 C -0.55 -30.93 9.50 67.95 0.65 -30.28 16 11 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 12 C 0.01 0.76 5.49 84.86 0.47 1.23 16 13 N -0.91 -55.79 13.22 21.65 0.29 -55.51 16 14 Si 1.00 43.20 29.55 68.60 2.03 45.23 16 15 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 16 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 18 C 0.15 1.89 5.04 86.38 0.44 2.33 16 19 N -0.68 -8.71 5.44 -350.97 -1.91 -10.62 16 20 C 0.54 9.03 8.43 261.46 2.20 11.24 16 21 N -0.56 -9.58 9.58 -197.78 -1.90 -11.48 16 22 C 0.17 2.22 11.29 84.75 0.96 3.17 16 23 C -0.08 -1.00 7.38 22.53 0.17 -0.83 16 24 F -0.13 -1.64 17.29 44.97 0.78 -0.86 16 25 C 0.18 2.03 11.29 84.75 0.96 2.99 16 26 N -0.56 -8.76 10.46 -197.78 -2.07 -10.82 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.54 7.18 -2.38 -0.02 0.52 16 29 H 0.07 0.64 7.18 -2.39 -0.02 0.62 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.42 6.30 7.66 -92.71 -0.71 5.59 16 33 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 34 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 35 H 0.27 15.39 8.31 -92.70 -0.77 14.61 16 36 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 38 H 0.42 4.05 7.77 -92.71 -0.72 3.33 16 39 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.21 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -79.50 364.63 1.24 -78.27 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -0.34 Total: 13.68 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 8.01 Total: 5.73 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -8.03 Total: -106.71 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.73 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.78 Total: -0.86 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -79.50 1.24 -78.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103881972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.496 kcal (2) G-P(sol) polarization free energy of solvation -79.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds