Wall clock time and date at job start Tue Mar 31 2020 16:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47249 * 2 1 4 4 C 1.52992 * 109.47259 * 120.00073 * 2 1 3 5 5 N 1.46499 * 109.47267 * 295.00054 * 4 2 1 6 6 C 1.34784 * 119.99971 * 180.02562 * 5 4 2 7 7 O 1.21274 * 119.99897 * 359.72827 * 6 5 4 8 8 C 1.50695 * 119.99635 * 179.97438 * 6 5 4 9 9 S 1.81006 * 109.46975 * 180.02562 * 8 6 5 10 10 C 1.76200 * 100.00155 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99670 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00050 * 180.02562 * 10 9 8 13 13 N 1.31631 * 119.99873 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99940 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46850 * 90.00197 * 14 12 10 16 16 H 1.48497 * 109.47572 * 209.99914 * 14 12 10 17 17 H 1.48498 * 109.47329 * 330.00770 * 14 12 10 18 18 C 1.53004 * 109.46915 * 240.00273 * 2 1 3 19 19 N 1.46501 * 109.47021 * 64.99890 * 18 2 1 20 20 C 1.38541 * 119.99762 * 180.02562 * 19 18 2 21 21 N 1.32459 * 119.18955 * 359.72560 * 20 19 18 22 22 C 1.32295 * 120.76441 * 179.76463 * 21 20 19 23 23 C 1.38784 * 119.16787 * 0.50246 * 22 21 20 24 24 F 1.35100 * 120.74231 * 179.72898 * 23 22 21 25 25 C 1.38774 * 118.51101 * 359.75254 * 23 22 21 26 26 N 1.32304 * 119.16877 * 359.97438 * 25 23 22 27 27 H 1.08996 * 109.47295 * 60.00307 * 1 2 3 28 28 H 1.09006 * 109.46887 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47105 * 299.99596 * 1 2 3 30 30 H 1.09004 * 109.47330 * 174.99958 * 4 2 1 31 31 H 1.09005 * 109.47124 * 55.00162 * 4 2 1 32 32 H 0.96999 * 119.99984 * 359.97438 * 5 4 2 33 33 H 1.09005 * 109.47403 * 300.00056 * 8 6 5 34 34 H 1.09002 * 109.47422 * 60.00295 * 8 6 5 35 35 H 0.97005 * 119.99693 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.46854 * 184.99580 * 18 2 1 37 37 H 1.08997 * 109.47182 * 304.99586 * 18 2 1 38 38 H 0.96998 * 120.00119 * 359.97438 * 19 18 2 39 39 H 1.08000 * 120.41112 * 180.27764 * 22 21 20 40 40 H 1.08003 * 120.41871 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9966 -0.4132 3.6659 7 8 2.6227 -1.4456 3.7793 8 6 1.5984 0.3654 4.8932 9 16 2.2030 -0.4871 6.3710 10 6 1.6147 0.6090 7.6188 11 1 1.0617 1.4946 7.3426 12 6 1.8618 0.3342 8.9567 13 7 1.4219 1.1528 9.8889 14 14 2.8176 -1.1980 9.4343 15 1 4.2673 -0.8803 9.4886 16 1 2.3640 -1.6689 10.7676 17 1 2.5817 -2.2629 8.4266 18 6 2.0400 -0.7212 -1.2493 19 7 1.6524 0.0355 -2.4424 20 6 2.0051 -0.4260 -3.7002 21 7 2.6975 -1.5504 -3.8051 22 6 3.0467 -2.0219 -4.9908 23 6 2.6876 -1.3175 -6.1314 24 9 3.0323 -1.7670 -7.3579 25 6 1.9669 -0.1408 -5.9838 26 7 1.6458 0.2706 -4.7680 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 3.1264 -0.7995 1.2055 31 1 1.6055 -1.7198 1.2951 32 1 1.1490 0.8594 2.3517 33 1 2.0330 1.3640 4.8469 34 1 0.5121 0.4437 4.9373 35 1 1.5950 0.9609 10.8239 36 1 3.1263 -0.7994 -1.2057 37 1 1.6055 -1.7198 -1.2952 38 1 1.1482 0.8591 -2.3518 39 1 3.6074 -2.9415 -5.0699 40 1 1.6717 0.4321 -6.8505 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103881973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:18 Heat of formation + Delta-G solvation = -32.610703 kcal Electronic energy + Delta-G solvation = -23558.038822 eV Core-core repulsion = 19641.807726 eV Total energy + Delta-G solvation = -3916.231096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.32493 -41.42070 -39.51692 -37.81381 -35.31337 -34.34383 -32.91422 -32.45265 -30.45590 -29.41500 -27.23382 -25.88648 -25.57707 -25.12975 -23.32658 -20.99384 -20.51819 -18.92793 -18.48636 -17.90672 -17.80999 -16.60480 -16.48990 -16.32705 -15.84819 -15.53294 -15.27013 -15.05978 -14.91874 -14.67914 -14.50194 -13.88840 -13.74377 -13.57475 -13.31027 -13.21376 -13.04703 -12.80419 -12.28349 -12.12550 -11.66543 -11.54283 -11.50934 -11.32584 -11.27922 -11.02067 -10.66581 -10.62365 -9.87485 -9.67287 -9.57932 -9.05831 -8.99844 -8.52237 -8.52115 -6.93756 -6.30497 -4.02475 0.44708 0.45423 2.22751 2.75285 2.93843 3.21278 3.28244 3.32732 3.46816 3.49400 3.53533 3.64288 4.04507 4.28003 4.30849 4.32030 4.34208 4.40886 4.48803 4.72481 4.95013 5.05675 5.08644 5.17901 5.23278 5.26504 5.41992 5.45900 5.57340 5.71410 5.73910 5.79390 5.85589 5.98321 6.11239 6.43077 6.46667 6.83195 7.54412 7.67745 7.92473 8.39777 8.44582 9.15703 10.78680 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.045109 B = 0.001608 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.570791 B =17414.026047 C =17890.787889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 H 0.086 0.914 4 C 0.130 3.870 5 N -0.736 5.736 6 C 0.531 3.469 7 O -0.518 6.518 8 C -0.124 4.124 9 S -0.142 6.142 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.142 3.858 19 N -0.689 5.689 20 C 0.558 3.442 21 N -0.542 5.542 22 C 0.176 3.824 23 C -0.078 4.078 24 F -0.128 7.128 25 C 0.175 3.825 26 N -0.548 5.548 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.399 0.601 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.271 0.729 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.416 0.584 39 H 0.179 0.821 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.679 -1.744 -33.017 33.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.136 4.136 3 H 0.104 0.896 4 C 0.005 3.995 5 N -0.391 5.391 6 C 0.317 3.683 7 O -0.393 6.393 8 C -0.275 4.275 9 S 0.085 5.915 10 C -0.670 4.670 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C 0.018 3.982 19 N -0.326 5.326 20 C 0.201 3.799 21 N -0.264 5.264 22 C 0.007 3.993 23 C -0.106 4.106 24 F -0.107 7.107 25 C 0.006 3.994 26 N -0.270 5.270 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.234 0.766 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.255 0.745 39 H 0.196 0.804 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.159 -3.203 -31.522 31.685 hybrid contribution -0.531 1.100 -0.793 1.456 sum -0.372 -2.104 -32.315 32.385 Atomic orbital electron populations 1.21902 0.93858 1.02927 1.02158 1.21611 0.97269 1.00902 0.93777 0.89554 1.21150 1.00315 0.95376 0.82613 1.45926 1.59583 1.28185 1.05403 1.20275 0.78709 0.85507 0.83850 1.90706 1.38631 1.23714 1.86205 1.23279 1.05089 1.02969 0.96163 1.84801 1.74632 1.35419 0.96677 1.22317 1.41628 1.11083 0.91961 0.89392 1.24711 0.94603 0.96712 0.95254 1.69941 1.44414 1.36551 1.00753 0.86734 0.80995 0.84352 0.79764 1.19203 1.19926 1.15918 1.21321 1.00579 0.95000 0.81336 1.44176 1.59617 1.28041 1.00788 1.19384 0.87686 0.86056 0.86748 1.68023 1.17353 1.14262 1.26764 1.23167 0.92654 0.98089 0.85431 1.19127 1.09110 0.99908 0.82419 1.91520 1.90863 1.88811 1.39492 1.23102 0.89844 0.91352 0.95145 1.67957 1.26600 1.34496 0.97956 0.92431 0.91889 0.91761 0.91145 0.91050 0.76639 0.88505 0.88446 0.91933 0.90683 0.90642 0.74541 0.80369 0.80440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.94 37.16 0.33 -0.54 16 2 C -0.12 -0.70 2.46 -90.62 -0.22 -0.93 16 3 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 4 C 0.13 1.23 5.06 -4.05 -0.02 1.21 16 5 N -0.74 -8.34 5.28 -60.30 -0.32 -8.66 16 6 C 0.53 8.96 7.85 -10.98 -0.09 8.88 16 7 O -0.52 -10.85 15.86 5.56 0.09 -10.76 16 8 C -0.12 -2.32 6.16 36.00 0.22 -2.10 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 10 C -0.52 -14.92 10.04 30.94 0.31 -14.61 16 11 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 12 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 13 N -0.88 -26.39 13.97 55.49 0.78 -25.61 16 14 Si 0.86 21.65 27.74 -169.99 -4.71 16.93 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 17 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 18 C 0.14 0.93 5.04 -4.04 -0.02 0.91 16 19 N -0.69 -4.69 5.44 -62.29 -0.34 -5.03 16 20 C 0.56 4.79 8.43 -322.71 -2.72 2.07 16 21 N -0.54 -4.66 9.58 -13.86 -0.13 -4.79 16 22 C 0.18 1.18 11.29 -17.15 -0.19 0.98 16 23 C -0.08 -0.51 7.38 -39.18 -0.29 -0.80 16 24 F -0.13 -0.87 17.30 2.25 0.04 -0.84 16 25 C 0.18 1.12 11.29 -17.15 -0.19 0.93 16 26 N -0.55 -4.53 10.46 -13.86 -0.14 -4.67 16 27 H 0.06 0.28 7.18 -51.93 -0.37 -0.09 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.38 7.18 -51.93 -0.37 0.01 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.40 3.40 7.66 -40.82 -0.31 3.09 16 33 H 0.10 1.68 8.14 -51.91 -0.42 1.25 16 34 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.42 2.31 7.77 -40.82 -0.32 2.00 16 39 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.18 0.60 8.06 -52.48 -0.42 0.17 16 LS Contribution 361.95 15.07 5.45 5.45 Total: -1.00 -35.24 361.95 -9.44 -44.68 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.18 Total: 0.14 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.98 Total: -1.31 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.16 Total: -48.77 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 9 Polarization: -0.87 SS G_CDS: 0.04 Total: -0.84 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.24 -9.44 -44.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103881973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.072 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds