Wall clock time and date at job start Tue Mar 31 2020 16:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 N 1.46500 * 109.47520 * 185.00200 * 4 2 1 6 6 C 1.38533 * 120.00265 * 179.97438 * 5 4 2 7 7 N 1.32454 * 119.19041 * 359.73128 * 6 5 4 8 8 C 1.32303 * 120.76992 * 179.75813 * 7 6 5 9 9 C 1.38787 * 119.16121 * 0.50364 * 8 7 6 10 10 F 1.35096 * 120.74231 * 179.72807 * 9 8 7 11 11 C 1.38776 * 118.51117 * 359.75309 * 9 8 7 12 12 N 1.32296 * 119.17025 * 359.97438 * 11 9 8 13 13 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 14 14 C 1.46497 * 119.99968 * 59.99779 * 13 2 1 15 15 C 1.34774 * 119.99744 * 239.99606 * 13 2 1 16 16 O 1.21283 * 120.00281 * 0.02562 * 15 13 2 17 17 C 1.50699 * 119.99876 * 179.97438 * 15 13 2 18 18 S 1.80997 * 109.47293 * 180.02562 * 17 15 13 19 19 C 1.76204 * 100.00122 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00052 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00084 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00098 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99766 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47072 * 89.99907 * 23 21 19 25 25 H 1.48503 * 109.46773 * 210.00063 * 23 21 19 26 26 H 1.48494 * 109.46968 * 329.99551 * 23 21 19 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 31 31 H 1.09002 * 109.47196 * 65.00121 * 4 2 1 32 32 H 0.96995 * 119.99638 * 359.97438 * 5 4 2 33 33 H 1.07996 * 120.41577 * 180.23384 * 8 7 6 34 34 H 1.08000 * 120.41702 * 179.97438 * 11 9 8 35 35 H 1.08998 * 109.47466 * 90.00240 * 14 13 2 36 36 H 1.09002 * 109.47260 * 210.00281 * 14 13 2 37 37 H 1.09000 * 109.47562 * 329.99730 * 14 13 2 38 38 H 1.08999 * 109.47401 * 300.00089 * 17 15 13 39 39 H 1.09001 * 109.47492 * 59.99837 * 17 15 13 40 40 H 0.97000 * 119.99745 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.1917 -1.4462 -2.2186 7 7 3.5164 -1.9426 -3.2442 8 6 4.1456 -2.5365 -4.2451 9 6 5.5287 -2.6447 -4.2054 10 9 6.2032 -3.2497 -5.2075 11 6 6.2032 -2.1179 -3.1130 12 7 5.5116 -1.5320 -2.1493 13 7 2.0183 -0.6906 1.1962 14 6 1.6643 -2.0932 1.4280 15 6 2.7932 -0.0356 2.0833 16 8 3.0859 1.1256 1.8916 17 6 3.2951 -0.7459 3.3140 18 16 4.3002 0.3919 4.2995 19 6 4.7429 -0.6691 5.6348 20 1 4.3923 -1.6905 5.6522 21 6 5.5415 -0.1919 6.6650 22 7 5.8718 -0.9843 7.6628 23 14 6.1461 1.5753 6.6361 24 1 5.1627 2.4464 7.3284 25 1 7.4571 1.6613 7.3284 26 1 6.2994 2.0230 5.2286 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6053 -1.7198 -1.2952 31 1 1.7516 -0.1584 -2.1370 32 1 3.9824 -0.4623 -0.4320 33 1 3.5896 -2.9359 -5.0804 34 1 7.2793 -2.1853 -3.0503 35 1 2.4156 -2.7377 0.9717 36 1 1.6237 -2.2852 2.5002 37 1 0.6903 -2.3002 0.9847 38 1 2.4471 -1.0880 3.9073 39 1 3.9004 -1.6026 3.0178 40 1 6.4302 -0.6509 8.3825 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104463751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:21 Heat of formation + Delta-G solvation = -15.970232 kcal Electronic energy + Delta-G solvation = -25026.203620 eV Core-core repulsion = 21110.694109 eV Total energy + Delta-G solvation = -3915.509511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.12977 -41.20901 -39.98939 -37.12230 -35.17034 -34.11745 -32.53173 -32.45103 -30.26105 -28.91147 -27.02361 -26.42576 -25.63709 -25.15356 -23.19796 -21.85892 -19.42242 -18.58787 -18.21594 -17.77629 -17.66822 -17.11729 -16.31191 -16.15962 -15.71179 -15.24017 -15.03673 -14.97484 -14.85157 -14.41192 -14.15323 -13.61547 -13.41342 -13.38932 -13.28446 -13.11910 -12.81233 -12.48424 -12.45308 -12.16749 -12.05820 -11.90721 -11.29634 -11.28504 -11.24630 -11.02587 -10.61817 -10.51182 -9.87815 -9.57026 -9.43999 -9.02323 -8.77289 -8.52365 -8.28124 -6.94625 -6.30775 -4.02852 0.67119 0.67982 2.47418 2.65382 2.80351 3.12635 3.31564 3.43999 3.48949 3.55822 3.68010 3.75024 4.26460 4.31035 4.36667 4.51358 4.57875 4.62596 4.80527 4.94404 4.95810 5.08349 5.14506 5.22971 5.25756 5.32399 5.34544 5.40203 5.61485 5.72080 5.77177 5.86689 5.96354 5.96664 6.34509 6.45140 6.68459 7.10872 7.29616 7.92020 7.92229 8.30637 8.39576 9.15392 10.78494 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.002956 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.092185 B = 9469.950232 C =10837.623392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 H 0.110 0.890 4 C 0.128 3.872 5 N -0.685 5.685 6 C 0.560 3.440 7 N -0.547 5.547 8 C 0.173 3.827 9 C -0.082 4.082 10 F -0.129 7.129 11 C 0.179 3.821 12 N -0.543 5.543 13 N -0.618 5.618 14 C 0.077 3.923 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.121 4.121 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.421 0.579 33 H 0.177 0.823 34 H 0.179 0.821 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.882 -4.306 -23.985 25.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.018 3.982 3 H 0.128 0.872 4 C 0.003 3.997 5 N -0.321 5.321 6 C 0.203 3.797 7 N -0.270 5.270 8 C 0.004 3.996 9 C -0.110 4.110 10 F -0.109 7.109 11 C 0.008 3.992 12 N -0.264 5.264 13 N -0.355 5.355 14 C -0.066 4.066 15 C 0.320 3.680 16 O -0.391 6.391 17 C -0.272 4.272 18 S 0.085 5.915 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.260 0.740 33 H 0.194 0.806 34 H 0.196 0.804 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.080 -2.141 -23.318 25.114 hybrid contribution 0.801 -1.307 -0.065 1.534 sum -8.279 -3.448 -23.383 25.044 Atomic orbital electron populations 1.22044 0.93464 1.02777 1.03219 1.21328 0.95022 0.98606 0.83284 0.87217 1.21771 0.78467 1.01498 0.97984 1.44194 1.06727 1.60300 1.20913 1.19389 0.85131 0.88098 0.87036 1.67984 1.39864 1.16419 1.02692 1.23084 0.89976 0.90981 0.95561 1.19107 0.92744 1.07775 0.91377 1.91505 1.79811 1.81357 1.58184 1.23148 1.01230 0.88477 0.86322 1.68019 1.07075 1.21807 1.29531 1.47918 1.52105 1.12747 1.22713 1.21787 1.00732 0.81226 1.02862 1.20400 0.77157 0.86766 0.83722 1.90706 1.56374 1.16383 1.75634 1.23313 1.03703 1.03458 0.96704 1.84790 1.63018 1.18980 1.24751 1.22296 1.37632 1.00290 1.06629 0.89419 1.24712 0.94426 0.98126 0.94015 1.69937 1.35717 1.36057 1.09965 0.86737 0.79159 0.84656 0.81314 1.19225 1.19920 1.15905 0.91276 0.91044 0.91861 0.90936 0.90308 0.73997 0.80591 0.80434 0.92719 0.90379 0.90979 0.88482 0.88493 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.17 37.16 0.34 -0.81 16 2 C 0.12 1.20 2.80 -67.93 -0.19 1.01 16 3 H 0.11 1.32 6.90 -51.93 -0.36 0.96 16 4 C 0.13 1.16 4.95 -4.04 -0.02 1.14 16 5 N -0.68 -7.97 5.54 -62.29 -0.35 -8.32 16 6 C 0.56 6.81 8.43 -322.72 -2.72 4.09 16 7 N -0.55 -5.81 9.58 -13.86 -0.13 -5.95 16 8 C 0.17 1.48 11.30 -17.15 -0.19 1.29 16 9 C -0.08 -0.74 7.38 -39.18 -0.29 -1.03 16 10 F -0.13 -1.16 17.29 2.25 0.04 -1.12 16 11 C 0.18 1.76 11.29 -17.15 -0.19 1.56 16 12 N -0.54 -6.84 10.46 -13.87 -0.15 -6.99 16 13 N -0.62 -7.35 2.24 -173.94 -0.39 -7.75 16 14 C 0.08 0.72 9.40 59.85 0.56 1.28 16 15 C 0.53 8.89 7.40 -10.99 -0.08 8.81 16 16 O -0.52 -10.39 15.19 5.56 0.08 -10.31 16 17 C -0.12 -2.28 4.71 36.01 0.17 -2.11 16 18 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 19 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 20 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.47 13.97 55.49 0.78 -25.70 16 23 Si 0.86 21.69 27.74 -169.99 -4.72 16.97 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.39 6.66 -51.93 -0.35 0.04 16 30 H 0.07 0.61 7.84 -51.93 -0.41 0.21 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.42 5.69 7.98 -40.82 -0.33 5.37 16 33 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 37 H 0.07 0.50 6.43 -51.93 -0.33 0.16 16 38 H 0.10 1.70 7.40 -51.92 -0.38 1.32 16 39 H 0.10 1.74 8.11 -51.92 -0.42 1.32 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -34.15 356.66 -8.87 -43.02 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.02 Total: 2.89 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.40 Total: 3.38 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.24 Total: -54.69 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.15 -8.87 -43.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104463751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.054 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds