Wall clock time and date at job start Tue Mar 31 2020 16:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 N 1.46500 * 109.47520 * 185.00200 * 4 2 1 6 6 C 1.38533 * 120.00265 * 179.97438 * 5 4 2 7 7 N 1.32454 * 119.19041 * 359.73128 * 6 5 4 8 8 C 1.32303 * 120.76992 * 179.75813 * 7 6 5 9 9 C 1.38787 * 119.16121 * 0.50364 * 8 7 6 10 10 F 1.35096 * 120.74231 * 179.72807 * 9 8 7 11 11 C 1.38776 * 118.51117 * 359.75309 * 9 8 7 12 12 N 1.32296 * 119.17025 * 359.97438 * 11 9 8 13 13 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 14 14 C 1.46497 * 119.99968 * 59.99779 * 13 2 1 15 15 C 1.34774 * 119.99744 * 239.99606 * 13 2 1 16 16 O 1.21283 * 120.00281 * 0.02562 * 15 13 2 17 17 C 1.50699 * 119.99876 * 179.97438 * 15 13 2 18 18 S 1.80997 * 109.47293 * 180.02562 * 17 15 13 19 19 C 1.76204 * 100.00122 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00052 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00084 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00098 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99766 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47072 * 89.99907 * 23 21 19 25 25 H 1.48503 * 109.46773 * 210.00063 * 23 21 19 26 26 H 1.48494 * 109.46968 * 329.99551 * 23 21 19 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 31 31 H 1.09002 * 109.47196 * 65.00121 * 4 2 1 32 32 H 0.96995 * 119.99638 * 359.97438 * 5 4 2 33 33 H 1.07996 * 120.41577 * 180.23384 * 8 7 6 34 34 H 1.08000 * 120.41702 * 179.97438 * 11 9 8 35 35 H 1.08998 * 109.47466 * 90.00240 * 14 13 2 36 36 H 1.09002 * 109.47260 * 210.00281 * 14 13 2 37 37 H 1.09000 * 109.47562 * 329.99730 * 14 13 2 38 38 H 1.08999 * 109.47401 * 300.00089 * 17 15 13 39 39 H 1.09001 * 109.47492 * 59.99837 * 17 15 13 40 40 H 0.97000 * 119.99745 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.1917 -1.4462 -2.2186 7 7 3.5164 -1.9426 -3.2442 8 6 4.1456 -2.5365 -4.2451 9 6 5.5287 -2.6447 -4.2054 10 9 6.2032 -3.2497 -5.2075 11 6 6.2032 -2.1179 -3.1130 12 7 5.5116 -1.5320 -2.1493 13 7 2.0183 -0.6906 1.1962 14 6 1.6643 -2.0932 1.4280 15 6 2.7932 -0.0356 2.0833 16 8 3.0859 1.1256 1.8916 17 6 3.2951 -0.7459 3.3140 18 16 4.3002 0.3919 4.2995 19 6 4.7429 -0.6691 5.6348 20 1 4.3923 -1.6905 5.6522 21 6 5.5415 -0.1919 6.6650 22 7 5.8718 -0.9843 7.6628 23 14 6.1461 1.5753 6.6361 24 1 5.1627 2.4464 7.3284 25 1 7.4571 1.6613 7.3284 26 1 6.2994 2.0230 5.2286 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6053 -1.7198 -1.2952 31 1 1.7516 -0.1584 -2.1370 32 1 3.9824 -0.4623 -0.4320 33 1 3.5896 -2.9359 -5.0804 34 1 7.2793 -2.1853 -3.0503 35 1 2.4156 -2.7377 0.9717 36 1 1.6237 -2.2852 2.5002 37 1 0.6903 -2.3002 0.9847 38 1 2.4471 -1.0880 3.9073 39 1 3.9004 -1.6026 3.0178 40 1 6.4302 -0.6509 8.3825 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104463751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:21 Heat of formation + Delta-G solvation = -37.430574 kcal Electronic energy + Delta-G solvation = -25027.134211 eV Core-core repulsion = 21110.694109 eV Total energy + Delta-G solvation = -3916.440102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.84263 -41.99122 -41.12955 -38.14999 -36.11276 -34.88820 -34.68467 -33.46868 -31.07041 -30.22030 -27.90966 -27.85415 -27.14072 -25.89307 -23.96993 -22.86577 -20.54281 -19.68092 -19.37846 -18.96222 -18.40124 -18.38272 -17.25649 -17.07743 -17.07180 -16.82465 -16.16990 -16.00751 -15.71781 -15.62001 -15.11248 -14.96935 -14.62730 -14.59557 -14.13121 -14.04493 -13.96912 -13.61051 -13.37355 -13.18413 -13.14203 -13.01934 -12.89799 -12.71309 -12.59753 -12.08912 -11.96183 -11.86792 -11.27610 -11.18274 -10.92675 -10.53882 -10.22030 -9.79433 -9.06808 -9.00923 -8.52848 -6.23465 -0.08886 -0.04324 0.96417 1.30081 1.44420 1.48254 1.52078 1.71085 2.05250 2.23794 2.65838 2.67294 2.85596 2.95901 3.04409 3.49149 3.59739 3.73339 3.81668 3.88542 4.07651 4.13204 4.20453 4.25427 4.41612 4.59088 4.61924 4.63737 4.66201 4.80162 4.88339 5.04310 5.22790 5.31530 5.50909 5.61225 5.69462 5.86692 6.09994 6.17262 6.25808 6.92471 7.04546 7.10486 8.59711 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.002956 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.092185 B = 9469.950232 C =10837.623392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.123 3.877 3 H 0.085 0.915 4 C 0.136 3.864 5 N -0.693 5.693 6 C 0.545 3.455 7 N -0.550 5.550 8 C 0.178 3.822 9 C -0.079 4.079 10 F -0.127 7.127 11 C 0.170 3.830 12 N -0.578 5.578 13 N -0.602 5.602 14 C 0.070 3.930 15 C 0.534 3.466 16 O -0.558 6.558 17 C -0.107 4.107 18 S -0.174 6.174 19 C -0.528 4.528 20 H 0.061 0.939 21 C 0.046 3.954 22 N -0.918 5.918 23 Si 0.914 3.086 24 H -0.261 1.261 25 H -0.260 1.260 26 H -0.237 1.237 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.409 0.591 33 H 0.213 0.787 34 H 0.198 0.802 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.320 -4.765 -26.303 28.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.019 3.981 3 H 0.104 0.896 4 C 0.011 3.989 5 N -0.329 5.329 6 C 0.189 3.811 7 N -0.273 5.273 8 C 0.009 3.991 9 C -0.107 4.107 10 F -0.106 7.106 11 C 0.001 3.999 12 N -0.301 5.301 13 N -0.336 5.336 14 C -0.072 4.072 15 C 0.322 3.678 16 O -0.436 6.436 17 C -0.258 4.258 18 S 0.053 5.947 19 C -0.675 4.675 20 H 0.079 0.921 21 C -0.160 4.160 22 N -0.556 5.556 23 Si 0.736 3.264 24 H -0.186 1.186 25 H -0.184 1.184 26 H -0.161 1.161 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.245 0.755 33 H 0.229 0.771 34 H 0.215 0.785 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.549 -2.650 -25.681 27.889 hybrid contribution 1.176 -1.320 0.490 1.835 sum -9.373 -3.971 -25.191 27.170 Atomic orbital electron populations 1.22015 0.90857 1.04219 1.03649 1.21486 0.96829 0.97212 0.82529 0.89642 1.21825 0.77246 1.02180 0.97603 1.44324 1.07516 1.60468 1.20562 1.19576 0.85291 0.88640 0.87612 1.68056 1.39747 1.16776 1.02741 1.23679 0.90056 0.89668 0.95684 1.19112 0.93075 1.07433 0.91078 1.91515 1.79852 1.81269 1.58006 1.23513 1.02227 0.87983 0.86149 1.68015 1.07748 1.23313 1.30974 1.47870 1.50045 1.13622 1.22048 1.22034 1.02653 0.79309 1.03184 1.19983 0.77842 0.86202 0.83812 1.90693 1.58348 1.17980 1.76562 1.23280 1.03181 1.02176 0.97118 1.84687 1.64827 1.20673 1.24524 1.22447 1.37306 0.99769 1.08014 0.92073 1.25560 0.94677 1.01965 0.93753 1.70015 1.36742 1.37963 1.10839 0.85873 0.79304 0.79964 0.81271 1.18609 1.18381 1.16096 0.92541 0.88978 0.89845 0.89533 0.89200 0.75453 0.77052 0.78538 0.92382 0.90645 0.87555 0.87067 0.87631 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.17 71.98 0.66 -1.09 16 2 C 0.12 2.22 2.80 44.99 0.13 2.34 16 3 H 0.09 2.03 6.90 -2.39 -0.02 2.01 16 4 C 0.14 2.17 4.95 86.38 0.43 2.59 16 5 N -0.69 -15.57 5.54 -350.99 -1.95 -17.52 16 6 C 0.55 12.73 8.43 261.46 2.20 14.93 16 7 N -0.55 -10.55 9.58 -197.78 -1.90 -12.44 16 8 C 0.18 2.59 11.30 84.75 0.96 3.55 16 9 C -0.08 -1.29 7.38 22.53 0.17 -1.12 16 10 F -0.13 -2.02 17.29 44.97 0.78 -1.24 16 11 C 0.17 3.20 11.29 84.75 0.96 4.15 16 12 N -0.58 -14.38 10.46 -197.79 -2.07 -16.44 16 13 N -0.60 -13.44 2.24 -822.60 -1.85 -15.29 16 14 C 0.07 1.13 9.40 127.77 1.20 2.33 16 15 C 0.53 17.71 7.40 87.66 0.65 18.36 16 16 O -0.56 -22.73 15.19 -3.04 -0.05 -22.78 16 17 C -0.11 -4.00 4.71 71.24 0.34 -3.67 16 18 S -0.17 -8.75 18.55 -56.49 -1.05 -9.80 16 19 C -0.53 -30.75 10.04 67.95 0.68 -30.07 16 20 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 21 C 0.05 2.70 5.50 84.86 0.47 3.16 16 22 N -0.92 -56.07 13.97 21.65 0.30 -55.77 16 23 Si 0.91 45.16 27.74 68.60 1.90 47.06 16 24 H -0.26 -12.56 7.11 99.48 0.71 -11.86 16 25 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.66 6.66 -2.39 -0.02 0.65 16 30 H 0.09 1.17 7.84 -2.39 -0.02 1.15 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.41 11.13 7.98 -92.71 -0.74 10.39 16 33 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.20 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 1.29 6.44 -2.39 -0.02 1.28 16 37 H 0.11 1.03 6.43 -2.39 -0.02 1.01 16 38 H 0.11 3.84 7.40 -2.40 -0.02 3.82 16 39 H 0.11 3.77 8.11 -2.39 -0.02 3.75 16 40 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -75.88 356.66 3.27 -72.61 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.31 Total: 16.13 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 8.83 Total: 15.48 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -7.45 Total: -117.46 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.05 Total: -22.78 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.78 Total: -1.24 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.06 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.05 Total: -9.80 kcal Total: -75.88 3.27 -72.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104463751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.175 kcal (2) G-P(sol) polarization free energy of solvation -75.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds