Wall clock time and date at job start Tue Mar 31 2020 16:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47677 * 2 1 4 4 C 1.53006 * 109.47045 * 119.99729 * 2 1 3 5 5 N 1.46502 * 109.47108 * 174.99652 * 4 2 1 6 6 C 1.38534 * 120.00061 * 179.97438 * 5 4 2 7 7 N 1.32454 * 119.18670 * 180.02562 * 6 5 4 8 8 C 1.32304 * 120.76519 * 179.97438 * 7 6 5 9 9 C 1.38779 * 119.16504 * 0.02562 * 8 7 6 10 10 F 1.35102 * 120.74594 * 180.02562 * 9 8 7 11 11 C 1.38785 * 118.51076 * 359.97438 * 9 8 7 12 12 N 1.32292 * 119.16724 * 0.02562 * 11 9 8 13 13 N 1.46496 * 109.47044 * 239.99608 * 2 1 3 14 14 C 1.46507 * 119.99957 * 300.00051 * 13 2 1 15 15 C 1.34775 * 119.99951 * 120.00264 * 13 2 1 16 16 O 1.21278 * 120.00311 * 359.97438 * 15 13 2 17 17 C 1.50706 * 120.00042 * 180.02562 * 15 13 2 18 18 S 1.81005 * 109.47116 * 179.97438 * 17 15 13 19 19 C 1.76203 * 99.99638 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00219 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99801 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00172 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99789 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47211 * 89.99630 * 23 21 19 25 25 H 1.48502 * 109.46927 * 209.99880 * 23 21 19 26 26 H 1.48501 * 109.47121 * 329.99695 * 23 21 19 27 27 H 1.09000 * 109.47087 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46739 * 299.99970 * 1 2 3 29 29 H 1.08998 * 109.47341 * 60.00037 * 1 2 3 30 30 H 1.08999 * 109.47013 * 55.00192 * 4 2 1 31 31 H 1.08993 * 109.47122 * 295.00069 * 4 2 1 32 32 H 0.97010 * 119.99900 * 0.02562 * 5 4 2 33 33 H 1.07993 * 120.41387 * 179.97438 * 8 7 6 34 34 H 1.07999 * 120.41318 * 179.97438 * 11 9 8 35 35 H 1.08993 * 109.47146 * 90.00342 * 14 13 2 36 36 H 1.09004 * 109.47016 * 209.99737 * 14 13 2 37 37 H 1.08993 * 109.47068 * 329.99779 * 14 13 2 38 38 H 1.09005 * 109.46845 * 299.99176 * 17 15 13 39 39 H 1.08991 * 109.47352 * 59.99162 * 17 15 13 40 40 H 0.97004 * 120.00220 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1918 -1.4451 2.2192 7 7 5.5118 -1.5308 2.1498 8 6 6.2037 -2.1146 3.1146 9 6 5.5292 -2.6405 4.2075 10 9 6.2039 -3.2429 5.2111 11 6 4.1461 -2.5327 4.2470 12 7 3.5171 -1.9362 3.2476 13 7 2.0183 -0.6907 -1.1961 14 6 1.6643 -2.0933 -1.4278 15 6 2.7932 -0.0358 -2.0833 16 8 3.0858 1.1255 -1.8917 17 6 3.2950 -0.7461 -3.3140 18 16 4.3002 0.3917 -4.2996 19 6 4.7429 -0.6694 -5.6348 20 1 4.3930 -1.6910 -5.6516 21 6 5.5414 -0.1923 -6.6651 22 7 5.8725 -0.9851 -7.6622 23 14 6.1472 1.5745 -6.6356 24 1 7.4513 1.6389 -5.9283 25 1 6.3143 2.0638 -8.0277 26 1 5.1575 2.4254 -5.9273 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1583 2.1370 32 1 3.9825 -0.4622 0.4319 33 1 7.2797 -2.1817 3.0520 34 1 3.5903 -2.9315 5.0827 35 1 0.7375 -2.1445 -1.9992 36 1 2.4628 -2.5821 -1.9862 37 1 1.5294 -2.5969 -0.4707 38 1 3.9005 -1.6027 -3.0176 39 1 2.4471 -1.0884 -3.9072 40 1 6.4309 -0.6518 -8.3820 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104463752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:26 Heat of formation + Delta-G solvation = -16.077045 kcal Electronic energy + Delta-G solvation = -25025.103179 eV Core-core repulsion = 21109.589036 eV Total energy + Delta-G solvation = -3915.514143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.13241 -41.21560 -39.99104 -37.13179 -35.16055 -34.12287 -32.53251 -32.45163 -30.26238 -28.91443 -26.99236 -26.45264 -25.63736 -25.16245 -23.20542 -21.85821 -19.42153 -18.59275 -18.21999 -17.77737 -17.67180 -17.12284 -16.31810 -16.14919 -15.77086 -15.20752 -15.04360 -14.97204 -14.84504 -14.40773 -14.15711 -13.59863 -13.43659 -13.38406 -13.24572 -13.06997 -12.81890 -12.59204 -12.37602 -12.22315 -12.04862 -11.89529 -11.30194 -11.29110 -11.27167 -11.02494 -10.61858 -10.50412 -9.87938 -9.56979 -9.44520 -9.02273 -8.77210 -8.52383 -8.28624 -6.94647 -6.30757 -4.02854 0.66648 0.67471 2.46824 2.65227 2.80427 3.12525 3.32017 3.43504 3.48686 3.55746 3.67546 3.74531 4.26155 4.31018 4.36766 4.50885 4.57538 4.62142 4.79036 4.92772 4.98458 5.08376 5.12999 5.23024 5.25497 5.32766 5.37087 5.39855 5.61135 5.71770 5.78982 5.85937 5.95876 5.96626 6.34085 6.44740 6.67870 7.10310 7.29526 7.91444 7.92207 8.30641 8.39620 9.15393 10.78498 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.002956 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.055460 B = 9470.800075 C =10838.733713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.122 3.878 3 H 0.110 0.890 4 C 0.127 3.873 5 N -0.685 5.685 6 C 0.560 3.440 7 N -0.543 5.543 8 C 0.179 3.821 9 C -0.082 4.082 10 F -0.129 7.129 11 C 0.174 3.826 12 N -0.547 5.547 13 N -0.618 5.618 14 C 0.078 3.922 15 C 0.531 3.469 16 O -0.517 6.517 17 C -0.121 4.121 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.421 0.579 33 H 0.179 0.821 34 H 0.177 0.823 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 -4.313 23.985 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.018 3.982 3 H 0.128 0.872 4 C 0.002 3.998 5 N -0.322 5.322 6 C 0.203 3.797 7 N -0.264 5.264 8 C 0.008 3.992 9 C -0.110 4.110 10 F -0.109 7.109 11 C 0.004 3.996 12 N -0.270 5.270 13 N -0.355 5.355 14 C -0.065 4.065 15 C 0.320 3.680 16 O -0.391 6.391 17 C -0.272 4.272 18 S 0.085 5.915 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.260 0.740 33 H 0.196 0.804 34 H 0.194 0.806 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.066 -2.145 23.317 25.109 hybrid contribution 0.835 -1.319 0.089 1.564 sum -8.230 -3.464 23.405 25.051 Atomic orbital electron populations 1.22028 0.93408 1.02800 1.03144 1.21327 0.95071 0.98606 0.83218 0.87219 1.21775 0.78476 1.01529 0.98052 1.44199 1.06705 1.60352 1.20896 1.19387 0.85140 0.88124 0.87007 1.68023 1.07055 1.21784 1.29554 1.23151 1.01234 0.88476 0.86313 1.19110 0.92737 1.07819 0.91324 1.91507 1.79797 1.81487 1.58062 1.23080 0.89981 0.90929 0.95606 1.67978 1.39887 1.16447 1.02661 1.47922 1.52109 1.12722 1.22737 1.21777 1.01467 0.81299 1.01993 1.20402 0.77153 0.86807 0.83687 1.90705 1.56388 1.16396 1.75606 1.23315 1.03809 1.03362 0.96685 1.84791 1.63783 1.18672 1.24298 1.22295 1.37530 1.00162 1.06863 0.89418 1.24711 0.94428 0.98122 0.94013 1.69935 1.35635 1.36016 1.10090 0.86738 0.81410 0.85121 0.78601 1.19175 1.19944 1.15931 0.91918 0.91111 0.91320 0.90900 0.90239 0.73983 0.80431 0.80588 0.92348 0.90519 0.91264 0.88523 0.88454 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.19 37.16 0.34 -0.82 16 2 C 0.12 1.21 2.80 -67.93 -0.19 1.02 16 3 H 0.11 1.32 6.90 -51.93 -0.36 0.96 16 4 C 0.13 1.14 4.89 -4.04 -0.02 1.12 16 5 N -0.69 -7.91 5.54 -62.29 -0.35 -8.26 16 6 C 0.56 6.76 8.43 -322.73 -2.72 4.04 16 7 N -0.54 -6.80 10.46 -13.87 -0.15 -6.94 16 8 C 0.18 1.75 11.29 -17.15 -0.19 1.55 16 9 C -0.08 -0.74 7.38 -39.18 -0.29 -1.03 16 10 F -0.13 -1.15 17.30 2.25 0.04 -1.11 16 11 C 0.17 1.47 11.29 -17.15 -0.19 1.28 16 12 N -0.55 -5.77 9.58 -13.87 -0.13 -5.90 16 13 N -0.62 -7.36 2.24 -173.93 -0.39 -7.75 16 14 C 0.08 0.72 9.30 59.85 0.56 1.28 16 15 C 0.53 8.89 7.40 -10.98 -0.08 8.81 16 16 O -0.52 -10.39 15.19 5.56 0.08 -10.30 16 17 C -0.12 -2.28 4.71 36.01 0.17 -2.11 16 18 S -0.14 -3.53 18.55 -107.50 -1.99 -5.53 16 19 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 20 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.47 13.97 55.49 0.78 -25.70 16 23 Si 0.86 21.68 27.74 -169.99 -4.72 16.97 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 27 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.61 6.88 -51.93 -0.36 0.25 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.42 5.65 7.98 -40.82 -0.33 5.33 16 33 H 0.18 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.77 6.44 -51.93 -0.33 0.43 16 37 H 0.07 0.53 6.53 -51.93 -0.34 0.19 16 38 H 0.10 1.72 7.40 -51.91 -0.38 1.33 16 39 H 0.10 1.72 8.11 -51.92 -0.42 1.30 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -34.12 356.68 -8.89 -43.00 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.03 Total: 2.85 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -2.40 Total: 3.30 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.24 Total: -54.55 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.12 -8.89 -43.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104463752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.923 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds