Wall clock time and date at job start Tue Mar 31 2020 16:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47677 * 2 1 4 4 C 1.53006 * 109.47045 * 119.99729 * 2 1 3 5 5 N 1.46502 * 109.47108 * 174.99652 * 4 2 1 6 6 C 1.38534 * 120.00061 * 179.97438 * 5 4 2 7 7 N 1.32454 * 119.18670 * 180.02562 * 6 5 4 8 8 C 1.32304 * 120.76519 * 179.97438 * 7 6 5 9 9 C 1.38779 * 119.16504 * 0.02562 * 8 7 6 10 10 F 1.35102 * 120.74594 * 180.02562 * 9 8 7 11 11 C 1.38785 * 118.51076 * 359.97438 * 9 8 7 12 12 N 1.32292 * 119.16724 * 0.02562 * 11 9 8 13 13 N 1.46496 * 109.47044 * 239.99608 * 2 1 3 14 14 C 1.46507 * 119.99957 * 300.00051 * 13 2 1 15 15 C 1.34775 * 119.99951 * 120.00264 * 13 2 1 16 16 O 1.21278 * 120.00311 * 359.97438 * 15 13 2 17 17 C 1.50706 * 120.00042 * 180.02562 * 15 13 2 18 18 S 1.81005 * 109.47116 * 179.97438 * 17 15 13 19 19 C 1.76203 * 99.99638 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00219 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99801 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00172 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99789 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47211 * 89.99630 * 23 21 19 25 25 H 1.48502 * 109.46927 * 209.99880 * 23 21 19 26 26 H 1.48501 * 109.47121 * 329.99695 * 23 21 19 27 27 H 1.09000 * 109.47087 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46739 * 299.99970 * 1 2 3 29 29 H 1.08998 * 109.47341 * 60.00037 * 1 2 3 30 30 H 1.08999 * 109.47013 * 55.00192 * 4 2 1 31 31 H 1.08993 * 109.47122 * 295.00069 * 4 2 1 32 32 H 0.97010 * 119.99900 * 0.02562 * 5 4 2 33 33 H 1.07993 * 120.41387 * 179.97438 * 8 7 6 34 34 H 1.07999 * 120.41318 * 179.97438 * 11 9 8 35 35 H 1.08993 * 109.47146 * 90.00342 * 14 13 2 36 36 H 1.09004 * 109.47016 * 209.99737 * 14 13 2 37 37 H 1.08993 * 109.47068 * 329.99779 * 14 13 2 38 38 H 1.09005 * 109.46845 * 299.99176 * 17 15 13 39 39 H 1.08991 * 109.47352 * 59.99162 * 17 15 13 40 40 H 0.97004 * 120.00220 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1918 -1.4451 2.2192 7 7 5.5118 -1.5308 2.1498 8 6 6.2037 -2.1146 3.1146 9 6 5.5292 -2.6405 4.2075 10 9 6.2039 -3.2429 5.2111 11 6 4.1461 -2.5327 4.2470 12 7 3.5171 -1.9362 3.2476 13 7 2.0183 -0.6907 -1.1961 14 6 1.6643 -2.0933 -1.4278 15 6 2.7932 -0.0358 -2.0833 16 8 3.0858 1.1255 -1.8917 17 6 3.2950 -0.7461 -3.3140 18 16 4.3002 0.3917 -4.2996 19 6 4.7429 -0.6694 -5.6348 20 1 4.3930 -1.6910 -5.6516 21 6 5.5414 -0.1923 -6.6651 22 7 5.8725 -0.9851 -7.6622 23 14 6.1472 1.5745 -6.6356 24 1 7.4513 1.6389 -5.9283 25 1 6.3143 2.0638 -8.0277 26 1 5.1575 2.4254 -5.9273 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1583 2.1370 32 1 3.9825 -0.4622 0.4319 33 1 7.2797 -2.1817 3.0520 34 1 3.5903 -2.9315 5.0827 35 1 0.7375 -2.1445 -1.9992 36 1 2.4628 -2.5821 -1.9862 37 1 1.5294 -2.5969 -0.4707 38 1 3.9005 -1.6027 -3.0176 39 1 2.4471 -1.0884 -3.9072 40 1 6.4309 -0.6518 -8.3820 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104463752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:25 Heat of formation + Delta-G solvation = -37.481966 kcal Electronic energy + Delta-G solvation = -25026.031366 eV Core-core repulsion = 21109.589036 eV Total energy + Delta-G solvation = -3916.442330 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -49.84067 -41.99218 -41.12953 -38.15733 -36.10125 -34.88752 -34.68464 -33.46833 -31.06653 -30.22339 -27.89715 -27.84453 -27.15731 -25.89641 -23.97213 -22.86480 -20.54073 -19.67899 -19.37908 -18.96150 -18.40495 -18.37928 -17.25682 -17.08971 -17.05646 -16.85078 -16.16060 -16.01623 -15.71759 -15.59968 -15.11298 -14.96945 -14.63437 -14.58428 -14.12120 -14.03321 -13.90088 -13.56407 -13.42039 -13.27292 -13.11910 -13.02578 -12.88205 -12.70695 -12.61154 -12.08803 -12.00125 -11.86929 -11.25614 -11.18355 -10.92998 -10.53800 -10.21951 -9.78600 -9.06730 -9.00876 -8.52781 -6.23399 -0.08808 -0.04245 0.96374 1.30483 1.44184 1.48558 1.52007 1.70918 2.05301 2.23779 2.65944 2.67369 2.85674 2.95980 3.04446 3.49154 3.59864 3.73089 3.81740 3.88682 4.06917 4.10100 4.21240 4.25385 4.41493 4.58716 4.61742 4.63960 4.70337 4.78195 4.90936 5.04468 5.22512 5.30420 5.50546 5.61020 5.69514 5.86732 6.10086 6.17281 6.25781 6.92527 7.04685 7.10538 8.59759 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.002956 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.055460 B = 9470.800075 C =10838.733713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.123 3.877 3 H 0.085 0.915 4 C 0.135 3.865 5 N -0.693 5.693 6 C 0.546 3.454 7 N -0.578 5.578 8 C 0.170 3.830 9 C -0.079 4.079 10 F -0.127 7.127 11 C 0.178 3.822 12 N -0.550 5.550 13 N -0.602 5.602 14 C 0.070 3.930 15 C 0.534 3.466 16 O -0.558 6.558 17 C -0.107 4.107 18 S -0.174 6.174 19 C -0.528 4.528 20 H 0.061 0.939 21 C 0.046 3.954 22 N -0.918 5.918 23 Si 0.914 3.086 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.236 1.236 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.409 0.591 33 H 0.198 0.802 34 H 0.213 0.787 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.284 -4.779 26.291 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 H 0.104 0.896 4 C 0.010 3.990 5 N -0.329 5.329 6 C 0.189 3.811 7 N -0.300 5.300 8 C 0.001 3.999 9 C -0.107 4.107 10 F -0.107 7.107 11 C 0.009 3.991 12 N -0.273 5.273 13 N -0.336 5.336 14 C -0.071 4.071 15 C 0.322 3.678 16 O -0.436 6.436 17 C -0.257 4.257 18 S 0.053 5.947 19 C -0.675 4.675 20 H 0.079 0.921 21 C -0.159 4.159 22 N -0.556 5.556 23 Si 0.736 3.264 24 H -0.188 1.188 25 H -0.183 1.183 26 H -0.160 1.160 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.246 0.754 33 H 0.215 0.785 34 H 0.229 0.771 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.518 -2.660 25.668 27.866 hybrid contribution 1.210 -1.333 -0.459 1.858 sum -9.308 -3.993 25.209 27.167 Atomic orbital electron populations 1.21994 0.90912 1.04164 1.03544 1.21479 0.96793 0.97238 0.82510 0.89636 1.21828 0.77272 1.02232 0.97619 1.44325 1.07475 1.60521 1.20550 1.19572 0.85295 0.88660 0.87578 1.68019 1.07731 1.23279 1.30989 1.23514 1.02226 0.87986 0.86143 1.19116 0.93072 1.07484 0.91025 1.91517 1.79841 1.81404 1.57891 1.23674 0.90054 0.89618 0.95733 1.68050 1.39765 1.16806 1.02699 1.47874 1.50084 1.13603 1.22044 1.22028 1.01942 0.79478 1.03699 1.19980 0.77866 0.86228 0.83761 1.90692 1.58385 1.17988 1.76530 1.23281 1.03256 1.02141 0.97058 1.84688 1.65511 1.20410 1.24118 1.22445 1.37212 0.99654 1.08216 0.92067 1.25558 0.94674 1.01956 0.93761 1.70013 1.36656 1.37929 1.10961 0.85875 0.80788 0.80490 0.79272 1.18783 1.18327 1.15982 0.90017 0.89037 0.92642 0.89428 0.89141 0.75419 0.78550 0.77060 0.90494 0.91290 0.88771 0.87511 0.87178 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.19 71.98 0.66 -1.12 16 2 C 0.12 2.23 2.80 44.99 0.13 2.35 16 3 H 0.09 2.03 6.90 -2.39 -0.02 2.02 16 4 C 0.13 2.12 4.89 86.38 0.42 2.55 16 5 N -0.69 -15.39 5.54 -350.99 -1.95 -17.33 16 6 C 0.55 12.60 8.43 261.46 2.20 14.80 16 7 N -0.58 -14.25 10.46 -197.79 -2.07 -16.32 16 8 C 0.17 3.17 11.29 84.75 0.96 4.13 16 9 C -0.08 -1.28 7.38 22.53 0.17 -1.11 16 10 F -0.13 -2.01 17.30 44.97 0.78 -1.23 16 11 C 0.18 2.56 11.29 84.75 0.96 3.52 16 12 N -0.55 -10.42 9.58 -197.79 -1.90 -12.32 16 13 N -0.60 -13.44 2.24 -822.59 -1.85 -15.28 16 14 C 0.07 1.13 9.30 127.77 1.19 2.32 16 15 C 0.53 17.70 7.40 87.66 0.65 18.35 16 16 O -0.56 -22.72 15.19 -3.02 -0.05 -22.77 16 17 C -0.11 -3.99 4.71 71.24 0.34 -3.65 16 18 S -0.17 -8.75 18.55 -56.49 -1.05 -9.80 16 19 C -0.53 -30.73 10.04 67.95 0.68 -30.05 16 20 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 21 C 0.05 2.70 5.50 84.86 0.47 3.17 16 22 N -0.92 -56.06 13.97 21.65 0.30 -55.76 16 23 Si 0.91 45.15 27.74 68.60 1.90 47.05 16 24 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 27 H 0.08 0.70 7.67 -2.39 -0.02 0.68 16 28 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.15 6.88 -2.39 -0.02 1.13 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.41 11.02 7.98 -92.70 -0.74 10.28 16 33 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.21 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.25 6.44 -2.38 -0.02 1.24 16 37 H 0.09 1.09 6.53 -2.39 -0.02 1.07 16 38 H 0.11 3.78 7.40 -2.39 -0.02 3.76 16 39 H 0.11 3.83 8.11 -2.40 -0.02 3.81 16 40 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -75.67 356.68 3.26 -72.42 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.31 Total: 16.09 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 8.82 Total: 15.24 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -7.45 Total: -117.01 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.05 Total: -22.77 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.78 Total: -1.23 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.05 Total: -9.80 kcal Total: -75.67 3.26 -72.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104463752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.937 kcal (2) G-P(sol) polarization free energy of solvation -75.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds