Wall clock time and date at job start Tue Mar 31 2020 16:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 N 1.46500 * 109.47520 * 185.00200 * 4 2 1 6 6 C 1.38566 * 120.00255 * 179.97438 * 5 4 2 7 7 C 1.39464 * 120.51375 * 0.02562 * 6 5 4 8 8 C 1.38478 * 118.31251 * 179.97438 * 7 6 5 9 9 F 1.35097 * 120.43179 * 179.97438 * 8 7 6 10 10 N 1.32793 * 119.13484 * 0.02562 * 8 7 6 11 11 C 1.31753 * 120.96220 * 359.97438 * 10 8 7 12 12 N 1.31761 * 121.86521 * 359.73795 * 11 10 8 13 13 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 14 14 C 1.46497 * 119.99968 * 59.99779 * 13 2 1 15 15 C 1.34774 * 119.99744 * 239.99606 * 13 2 1 16 16 O 1.21283 * 120.00281 * 0.02562 * 15 13 2 17 17 C 1.50699 * 119.99876 * 179.97438 * 15 13 2 18 18 S 1.80997 * 109.47293 * 180.02562 * 17 15 13 19 19 C 1.76204 * 100.00122 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00052 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00084 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99694 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00149 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46751 * 90.00052 * 23 21 19 25 25 H 1.48493 * 109.47180 * 209.99875 * 23 21 19 26 26 H 1.48501 * 109.47236 * 330.00683 * 23 21 19 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 31 31 H 1.09002 * 109.47196 * 65.00121 * 4 2 1 32 32 H 0.96995 * 119.99638 * 359.97438 * 5 4 2 33 33 H 1.07994 * 120.84901 * 359.97438 * 7 6 5 34 34 H 1.08008 * 119.06846 * 179.97438 * 11 10 8 35 35 H 1.08998 * 109.47466 * 90.00240 * 14 13 2 36 36 H 1.09002 * 109.47260 * 210.00281 * 14 13 2 37 37 H 1.09000 * 109.47562 * 329.99730 * 14 13 2 38 38 H 1.08999 * 109.47401 * 300.00089 * 17 15 13 39 39 H 1.09001 * 109.47492 * 59.99837 * 17 15 13 40 40 H 0.96995 * 119.99536 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.1919 -1.4463 -2.2188 7 6 3.5091 -1.9732 -3.3149 8 6 4.2459 -2.5824 -4.3167 9 9 3.6284 -3.1077 -5.3973 10 7 5.5673 -2.6443 -4.2008 11 6 6.1803 -2.1359 -3.1512 12 7 5.5182 -1.5430 -2.1785 13 7 2.0183 -0.6906 1.1962 14 6 1.6643 -2.0932 1.4280 15 6 2.7932 -0.0356 2.0833 16 8 3.0859 1.1256 1.8916 17 6 3.2951 -0.7459 3.3140 18 16 4.3002 0.3919 4.2995 19 6 4.7429 -0.6691 5.6348 20 1 4.3923 -1.6905 5.6522 21 6 5.5415 -0.1919 6.6650 22 7 5.9675 1.0534 6.6446 23 14 6.0103 -1.3164 8.0810 24 1 7.2781 -2.0183 7.7567 25 1 6.1925 -0.5098 9.3143 26 1 4.9330 -2.3154 8.2974 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6053 -1.7198 -1.2952 31 1 1.7516 -0.1584 -2.1370 32 1 3.9824 -0.4623 -0.4320 33 1 2.4332 -1.9079 -3.3807 34 1 7.2564 -2.2037 -3.0881 35 1 2.4156 -2.7377 0.9717 36 1 1.6237 -2.2852 2.5002 37 1 0.6903 -2.3002 0.9847 38 1 2.4471 -1.0880 3.9073 39 1 3.9004 -1.6026 3.0178 40 1 6.5259 1.3867 7.3644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104464525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:32 Heat of formation + Delta-G solvation = -18.422653 kcal Electronic energy + Delta-G solvation = -25035.575671 eV Core-core repulsion = 21119.959815 eV Total energy + Delta-G solvation = -3915.615856 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.42667 -41.12861 -39.98416 -37.36365 -35.57750 -33.28154 -32.46568 -32.34605 -30.86569 -28.84446 -27.04723 -26.74415 -25.52909 -24.65180 -23.27913 -21.88222 -19.44931 -18.79888 -18.49052 -17.80746 -17.08517 -16.54682 -16.23842 -16.19675 -15.89438 -15.55581 -15.25187 -14.89857 -14.83406 -14.59071 -14.24844 -13.95295 -13.69059 -13.44429 -13.37416 -13.15143 -12.72444 -12.49239 -12.41800 -12.18029 -11.93213 -11.53380 -11.22127 -11.09474 -11.06172 -11.01593 -10.79266 -10.09472 -9.85307 -9.69937 -9.51894 -9.10124 -8.77709 -8.60051 -8.28819 -6.55104 -6.25448 -3.96575 0.59609 0.95043 2.51531 2.77938 2.86348 3.12713 3.19990 3.22005 3.27499 3.48561 3.51233 3.93963 4.16179 4.23432 4.32826 4.61767 4.73244 4.83621 4.88023 4.89129 4.94097 5.04237 5.09943 5.11628 5.27078 5.31397 5.33623 5.47786 5.60355 5.73131 5.78594 5.83237 5.95172 6.05452 6.27327 6.44540 6.78473 7.14472 7.31730 7.55878 7.86653 8.31234 8.36924 9.20074 10.81965 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.014600 B = 0.002789 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.396606 B =10036.360026 C =11211.045965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 H 0.112 0.888 4 C 0.111 3.889 5 N -0.694 5.694 6 C 0.465 3.535 7 C -0.323 4.323 8 C 0.383 3.617 9 F -0.105 7.105 10 N -0.597 5.597 11 C 0.379 3.621 12 N -0.578 5.578 13 N -0.621 5.621 14 C 0.078 3.922 15 C 0.533 3.467 16 O -0.513 6.513 17 C -0.151 4.151 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.418 0.582 33 H 0.151 0.849 34 H 0.208 0.792 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.595 -7.600 -19.236 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.130 0.870 4 C -0.014 4.014 5 N -0.325 5.325 6 C 0.220 3.780 7 C -0.353 4.353 8 C 0.224 3.776 9 F -0.084 7.084 10 N -0.323 5.323 11 C 0.089 3.911 12 N -0.303 5.303 13 N -0.358 5.358 14 C -0.065 4.065 15 C 0.322 3.678 16 O -0.387 6.387 17 C -0.301 4.301 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.257 0.743 33 H 0.169 0.831 34 H 0.224 0.776 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.400 -5.772 -19.391 22.309 hybrid contribution -0.891 -2.150 1.129 2.587 sum -10.291 -7.922 -18.262 22.409 Atomic orbital electron populations 1.22063 0.93453 1.02744 1.03372 1.21239 0.94960 0.98695 0.83103 0.86990 1.21997 0.78910 1.01445 0.99066 1.44582 1.06463 1.59738 1.21752 1.18286 0.87942 0.85616 0.86134 1.21725 1.02848 1.13117 0.97585 1.17995 0.87760 0.89172 0.82641 1.91647 1.80886 1.83408 1.52419 1.67865 1.08837 1.26867 1.28710 1.24586 1.00477 0.84668 0.81331 1.68080 1.06817 1.23974 1.31468 1.47951 1.52417 1.12693 1.22723 1.21765 1.00494 0.81357 1.02927 1.20454 0.76948 0.86765 0.83669 1.90714 1.56105 1.16368 1.75494 1.23560 1.04333 1.04799 0.97422 1.85400 1.61035 1.15071 1.21790 1.22841 1.37489 0.99697 1.08349 0.90965 1.24991 0.95064 0.95531 0.97949 1.70013 1.33075 1.14307 1.32825 0.86168 0.78930 0.79918 0.80496 1.20221 1.20736 1.19707 0.91061 0.91902 0.91106 0.90931 0.90192 0.74309 0.83080 0.77558 0.92811 0.90399 0.91145 0.89192 0.89215 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.17 37.16 0.34 -0.71 16 2 C 0.12 1.14 2.80 -67.93 -0.19 0.95 16 3 H 0.11 1.30 6.90 -51.93 -0.36 0.94 16 4 C 0.11 0.82 4.22 -4.04 -0.02 0.81 16 5 N -0.69 -7.29 5.54 -60.29 -0.33 -7.63 16 6 C 0.47 5.21 7.71 -154.77 -1.19 4.02 16 7 C -0.32 -3.10 9.39 -39.04 -0.37 -3.46 16 8 C 0.38 4.18 8.50 -17.05 -0.14 4.04 16 9 F -0.10 -1.10 17.30 2.25 0.04 -1.06 16 10 N -0.60 -6.96 10.45 -14.98 -0.16 -7.12 16 11 C 0.38 4.03 12.28 -92.22 -1.13 2.90 16 12 N -0.58 -7.17 10.47 -13.84 -0.14 -7.32 16 13 N -0.62 -7.19 2.24 -173.94 -0.39 -7.58 16 14 C 0.08 0.68 9.40 59.85 0.56 1.25 16 15 C 0.53 9.04 7.40 -10.99 -0.08 8.96 16 16 O -0.51 -10.58 15.19 5.56 0.08 -10.50 16 17 C -0.15 -2.88 4.71 36.01 0.17 -2.71 16 18 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 19 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 20 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 23 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.33 6.66 -51.93 -0.35 -0.01 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.43 7.67 -51.93 -0.40 0.04 16 31 H 0.08 0.46 7.97 -51.93 -0.41 0.05 16 32 H 0.42 5.44 7.99 -40.82 -0.33 5.11 16 33 H 0.15 1.06 6.86 -52.49 -0.36 0.70 16 34 H 0.21 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.73 6.44 -51.93 -0.33 0.39 16 37 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16 38 H 0.09 1.59 7.40 -51.92 -0.38 1.21 16 39 H 0.09 1.62 8.11 -51.92 -0.42 1.20 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -34.39 357.46 -8.78 -43.18 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.91 Total: 2.00 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.85 Total: 3.38 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.29 Total: -54.70 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.39 -8.78 -43.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104464525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.754 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds