Wall clock time and date at job start Tue Mar 31 2020 16:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 N 1.46500 * 109.47520 * 185.00200 * 4 2 1 6 6 C 1.38566 * 120.00255 * 179.97438 * 5 4 2 7 7 C 1.39464 * 120.51375 * 0.02562 * 6 5 4 8 8 C 1.38478 * 118.31251 * 179.97438 * 7 6 5 9 9 F 1.35097 * 120.43179 * 179.97438 * 8 7 6 10 10 N 1.32793 * 119.13484 * 0.02562 * 8 7 6 11 11 C 1.31753 * 120.96220 * 359.97438 * 10 8 7 12 12 N 1.31761 * 121.86521 * 359.73795 * 11 10 8 13 13 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 14 14 C 1.46497 * 119.99968 * 59.99779 * 13 2 1 15 15 C 1.34774 * 119.99744 * 239.99606 * 13 2 1 16 16 O 1.21283 * 120.00281 * 0.02562 * 15 13 2 17 17 C 1.50699 * 119.99876 * 179.97438 * 15 13 2 18 18 S 1.80997 * 109.47293 * 180.02562 * 17 15 13 19 19 C 1.76204 * 100.00122 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00052 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00084 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99694 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00149 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46751 * 90.00052 * 23 21 19 25 25 H 1.48493 * 109.47180 * 209.99875 * 23 21 19 26 26 H 1.48501 * 109.47236 * 330.00683 * 23 21 19 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 31 31 H 1.09002 * 109.47196 * 65.00121 * 4 2 1 32 32 H 0.96995 * 119.99638 * 359.97438 * 5 4 2 33 33 H 1.07994 * 120.84901 * 359.97438 * 7 6 5 34 34 H 1.08008 * 119.06846 * 179.97438 * 11 10 8 35 35 H 1.08998 * 109.47466 * 90.00240 * 14 13 2 36 36 H 1.09002 * 109.47260 * 210.00281 * 14 13 2 37 37 H 1.09000 * 109.47562 * 329.99730 * 14 13 2 38 38 H 1.08999 * 109.47401 * 300.00089 * 17 15 13 39 39 H 1.09001 * 109.47492 * 59.99837 * 17 15 13 40 40 H 0.96995 * 119.99536 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.1919 -1.4463 -2.2188 7 6 3.5091 -1.9732 -3.3149 8 6 4.2459 -2.5824 -4.3167 9 9 3.6284 -3.1077 -5.3973 10 7 5.5673 -2.6443 -4.2008 11 6 6.1803 -2.1359 -3.1512 12 7 5.5182 -1.5430 -2.1785 13 7 2.0183 -0.6906 1.1962 14 6 1.6643 -2.0932 1.4280 15 6 2.7932 -0.0356 2.0833 16 8 3.0859 1.1256 1.8916 17 6 3.2951 -0.7459 3.3140 18 16 4.3002 0.3919 4.2995 19 6 4.7429 -0.6691 5.6348 20 1 4.3923 -1.6905 5.6522 21 6 5.5415 -0.1919 6.6650 22 7 5.9675 1.0534 6.6446 23 14 6.0103 -1.3164 8.0810 24 1 7.2781 -2.0183 7.7567 25 1 6.1925 -0.5098 9.3143 26 1 4.9330 -2.3154 8.2974 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6053 -1.7198 -1.2952 31 1 1.7516 -0.1584 -2.1370 32 1 3.9824 -0.4623 -0.4320 33 1 2.4332 -1.9079 -3.3807 34 1 7.2564 -2.2037 -3.0881 35 1 2.4156 -2.7377 0.9717 36 1 1.6237 -2.2852 2.5002 37 1 0.6903 -2.3002 0.9847 38 1 2.4471 -1.0880 3.9073 39 1 3.9004 -1.6026 3.0178 40 1 6.5259 1.3867 7.3644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104464525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:31 Heat of formation + Delta-G solvation = -41.114808 kcal Electronic energy + Delta-G solvation = -25036.559677 eV Core-core repulsion = 21119.959815 eV Total energy + Delta-G solvation = -3916.599862 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.22247 -41.93635 -41.09362 -38.33222 -36.52910 -34.59148 -34.15576 -33.22121 -31.65244 -30.19508 -27.86953 -27.66529 -27.40632 -25.44513 -24.05677 -22.83426 -20.52650 -19.70641 -19.52462 -19.30433 -18.33103 -17.36425 -17.20082 -17.04363 -16.88715 -16.76052 -16.49783 -16.18993 -16.10566 -15.55397 -15.36651 -14.81047 -14.68387 -14.58184 -14.49102 -14.10606 -13.98943 -13.55206 -13.20321 -13.17277 -13.11529 -12.90227 -12.80160 -12.59289 -12.24901 -11.92658 -11.78742 -11.70114 -11.15005 -10.92838 -10.84674 -10.54158 -10.27337 -9.76405 -9.35756 -8.67111 -8.35503 -6.13170 -0.18189 0.13447 1.24769 1.41503 1.44861 1.54178 1.55011 1.77778 2.09483 2.26810 2.35398 2.68504 2.98841 3.19397 3.25439 3.52985 3.57976 3.77792 3.97750 4.05512 4.14496 4.19459 4.21215 4.27820 4.45986 4.48470 4.57287 4.60622 4.66866 4.80545 4.89701 5.05280 5.16285 5.33008 5.40822 5.49170 5.58148 6.01494 6.18176 6.20036 6.25452 7.06084 7.06791 7.11522 8.73605 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.014600 B = 0.002789 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.396606 B =10036.360026 C =11211.045965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.122 3.878 3 H 0.082 0.918 4 C 0.112 3.888 5 N -0.700 5.700 6 C 0.453 3.547 7 C -0.307 4.307 8 C 0.369 3.631 9 F -0.104 7.104 10 N -0.615 5.615 11 C 0.376 3.624 12 N -0.609 5.609 13 N -0.603 5.603 14 C 0.069 3.931 15 C 0.533 3.467 16 O -0.561 6.561 17 C -0.125 4.125 18 S -0.149 6.149 19 C -0.545 4.545 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.258 1.258 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.404 0.596 33 H 0.182 0.818 34 H 0.232 0.768 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.588 -10.080 -20.148 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.019 3.981 3 H 0.100 0.900 4 C -0.011 4.011 5 N -0.329 5.329 6 C 0.209 3.791 7 C -0.336 4.336 8 C 0.212 3.788 9 F -0.083 7.083 10 N -0.341 5.341 11 C 0.087 3.913 12 N -0.335 5.335 13 N -0.338 5.338 14 C -0.072 4.072 15 C 0.321 3.679 16 O -0.439 6.439 17 C -0.276 4.276 18 S 0.078 5.922 19 C -0.693 4.693 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.181 1.181 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.240 0.760 33 H 0.199 0.801 34 H 0.248 0.752 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.454 -8.300 -20.356 24.788 hybrid contribution -0.357 -1.406 1.283 1.937 sum -11.812 -9.706 -19.073 24.444 Atomic orbital electron populations 1.22034 0.90784 1.04376 1.03654 1.21436 0.96825 0.97211 0.82632 0.89981 1.22208 0.77213 1.03049 0.98676 1.44765 1.07554 1.59490 1.21056 1.18498 0.87870 0.86020 0.86760 1.21860 1.04093 1.11564 0.96104 1.18199 0.87844 0.89692 0.83105 1.91646 1.80801 1.83453 1.52427 1.67883 1.09587 1.27468 1.29190 1.25068 1.01490 0.84023 0.80725 1.68095 1.07958 1.24996 1.32460 1.47885 1.50163 1.13664 1.22067 1.22048 1.02711 0.79245 1.03234 1.20078 0.77744 0.86166 0.83931 1.90700 1.58331 1.18297 1.76560 1.23375 1.03555 1.03041 0.97621 1.85550 1.63492 1.19333 1.23845 1.23178 1.37530 0.99973 1.08627 0.90082 1.26107 0.94825 0.97135 1.01021 1.70179 1.34036 1.16534 1.33976 0.84977 0.78983 0.77776 0.76409 1.19404 1.20306 1.18147 0.88740 0.89491 0.92971 0.88159 0.87772 0.76047 0.80058 0.75185 0.92116 0.90862 0.87368 0.87551 0.88007 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.17 71.98 0.66 -0.82 16 2 C 0.12 1.99 2.80 44.99 0.13 2.11 16 3 H 0.08 1.89 6.90 -2.39 -0.02 1.88 16 4 C 0.11 1.29 4.22 86.38 0.36 1.65 16 5 N -0.70 -13.59 5.54 -344.67 -1.91 -15.50 16 6 C 0.45 9.46 7.71 133.10 1.03 10.49 16 7 C -0.31 -5.09 9.39 22.62 0.21 -4.88 16 8 C 0.37 7.47 8.50 84.60 0.72 8.18 16 9 F -0.10 -2.02 17.30 44.97 0.78 -1.24 16 10 N -0.61 -13.78 10.45 -201.31 -2.10 -15.88 16 11 C 0.38 7.77 12.28 180.91 2.22 9.99 16 12 N -0.61 -14.81 10.47 -197.70 -2.07 -16.88 16 13 N -0.60 -12.94 2.24 -822.60 -1.85 -14.79 16 14 C 0.07 0.99 9.40 127.77 1.20 2.19 16 15 C 0.53 18.19 7.40 87.66 0.65 18.84 16 16 O -0.56 -24.16 15.19 -3.04 -0.05 -24.20 16 17 C -0.12 -4.78 4.71 71.24 0.34 -4.45 16 18 S -0.15 -8.16 20.57 -56.49 -1.16 -9.32 16 19 C -0.55 -30.83 9.50 67.95 0.65 -30.18 16 20 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 21 C 0.01 0.79 5.49 84.86 0.47 1.25 16 22 N -0.91 -55.71 13.22 21.65 0.29 -55.42 16 23 Si 1.00 43.32 29.55 68.60 2.03 45.35 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 27 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.09 0.46 6.66 -2.39 -0.02 0.44 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.66 7.67 -2.39 -0.02 0.64 16 31 H 0.10 0.77 7.97 -2.39 -0.02 0.75 16 32 H 0.40 10.44 7.99 -92.71 -0.74 9.70 16 33 H 0.18 1.74 6.86 -2.91 -0.02 1.72 16 34 H 0.23 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 1.16 6.44 -2.39 -0.02 1.14 16 37 H 0.11 0.78 6.43 -2.39 -0.02 0.76 16 38 H 0.11 3.69 7.40 -2.40 -0.02 3.67 16 39 H 0.10 3.62 8.11 -2.39 -0.02 3.60 16 40 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -79.43 357.46 2.93 -76.50 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.35 Total: 17.00 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 8.63 Total: 14.39 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -7.64 Total: -118.48 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.05 Total: -24.20 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.78 Total: -1.24 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.32 kcal Total: -79.43 2.93 -76.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104464525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.390 kcal (2) G-P(sol) polarization free energy of solvation -79.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds