Wall clock time and date at job start Tue Mar 31 2020 16:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 C 1.52995 * 109.47023 * 119.99594 * 2 1 3 5 5 C 1.52999 * 109.47075 * 185.00349 * 4 2 1 6 6 N 1.46506 * 109.47151 * 179.97438 * 5 4 2 7 7 C 1.38534 * 119.99952 * 179.97438 * 6 5 4 8 8 N 1.32464 * 119.18920 * 359.73204 * 7 6 5 9 9 C 1.32298 * 120.76170 * 179.75809 * 8 7 6 10 10 C 1.38778 * 119.17055 * 0.50658 * 9 8 7 11 11 F 1.35101 * 120.74694 * 179.73057 * 10 9 8 12 12 C 1.38782 * 118.50844 * 359.74762 * 10 9 8 13 13 N 1.32295 * 119.17204 * 359.97438 * 12 10 9 14 14 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 15 15 C 1.34777 * 120.00199 * 85.00207 * 14 2 1 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 2 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 2 18 18 S 1.80999 * 109.46903 * 179.72354 * 17 15 14 19 19 C 1.76200 * 99.99730 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00351 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99941 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00384 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47506 * 89.99666 * 23 21 19 25 25 H 1.48498 * 109.47217 * 210.00061 * 23 21 19 26 26 H 1.48502 * 109.46767 * 329.99807 * 23 21 19 27 27 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 28 28 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 30 30 H 1.09000 * 109.47218 * 305.00067 * 4 2 1 31 31 H 1.09000 * 109.47293 * 65.00233 * 4 2 1 32 32 H 1.09000 * 109.46867 * 299.99933 * 5 4 2 33 33 H 1.09000 * 109.47154 * 59.99799 * 5 4 2 34 34 H 0.97002 * 119.99797 * 359.97438 * 6 5 4 35 35 H 1.08002 * 120.41197 * 180.23154 * 9 8 7 36 36 H 1.08001 * 120.41110 * 179.97438 * 12 10 9 37 37 H 0.97000 * 119.99484 * 264.99304 * 14 2 1 38 38 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 39 39 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 40 40 H 0.97002 * 120.00288 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 7 4.0531 -1.3031 2.5103 7 6 5.4108 -1.3402 2.7830 8 7 6.2537 -0.7510 1.9481 9 6 7.5560 -0.7632 2.1806 10 6 8.0355 -1.4125 3.3096 11 9 9.3596 -1.4494 3.5751 12 6 7.1242 -2.0234 4.1595 13 7 5.8346 -1.9680 3.8696 14 7 2.0183 -0.6906 -1.1961 15 6 2.1471 -0.0183 -2.3571 16 8 1.8582 1.1583 -2.4117 17 6 2.6435 -0.7303 -3.5891 18 16 2.6982 0.4311 -4.9762 19 6 3.2960 -0.6356 -6.2449 20 1 3.5060 -1.6719 -6.0247 21 6 3.4959 -0.1444 -7.5276 22 7 3.2385 1.1182 -7.7964 23 14 4.1289 -1.2754 -8.8728 24 1 2.9801 -1.9138 -9.5641 25 1 4.9194 -0.4864 -9.8515 26 1 4.9906 -2.3251 -8.2720 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6053 -0.2616 2.1370 31 1 1.7516 -1.7714 1.2057 32 1 3.9994 -1.0727 0.4261 33 1 3.8531 0.4372 1.3573 34 1 3.4256 -1.7340 3.1117 35 1 8.2379 -0.2778 1.4980 36 1 7.4636 -2.5376 5.0465 37 1 2.2491 -1.6318 -1.1525 38 1 3.6436 -1.1225 -3.4039 39 1 1.9697 -1.5525 -3.8299 40 1 3.3785 1.4616 -8.6927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106228249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:03 Heat of formation + Delta-G solvation = -32.609553 kcal Electronic energy + Delta-G solvation = -24055.305865 eV Core-core repulsion = 20139.074819 eV Total energy + Delta-G solvation = -3916.231046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.19812 -41.28170 -39.50796 -37.24044 -35.39212 -34.21097 -32.42868 -32.15909 -30.85381 -28.77828 -28.37253 -25.51142 -25.47605 -24.14996 -22.83476 -21.51974 -20.35622 -18.84811 -18.32381 -17.82136 -17.73023 -16.63737 -16.37167 -16.08943 -15.67998 -15.34764 -14.99696 -14.83663 -14.80157 -14.43935 -14.38868 -13.89617 -13.64967 -13.44043 -13.24420 -12.93114 -12.66227 -12.23310 -12.09635 -11.99734 -11.95555 -11.52332 -11.37526 -11.09977 -11.06268 -11.01928 -10.75727 -10.52998 -9.81352 -9.53536 -9.39194 -9.07109 -8.94311 -8.39800 -8.23490 -6.49604 -6.21575 -3.91940 0.58018 0.58081 2.37805 3.02506 3.09220 3.22387 3.27987 3.32078 3.34442 3.59634 3.67036 3.70689 4.15155 4.20633 4.41343 4.43244 4.48652 4.67431 4.72515 5.13571 5.14744 5.18163 5.21043 5.29001 5.30984 5.53270 5.58939 5.64545 5.67777 5.88028 5.89053 5.98311 6.13846 6.16024 6.23786 6.57442 6.63633 6.95054 7.59693 7.68992 7.81053 8.35336 8.61038 9.23853 10.85831 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.002432 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.959983 B =11509.238807 C =13537.975957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 H 0.092 0.908 4 C -0.139 4.139 5 C 0.132 3.868 6 N -0.693 5.693 7 C 0.556 3.444 8 N -0.538 5.538 9 C 0.178 3.822 10 C -0.077 4.077 11 F -0.128 7.128 12 C 0.173 3.827 13 N -0.550 5.550 14 N -0.736 5.736 15 C 0.534 3.466 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.415 0.585 35 H 0.180 0.820 36 H 0.178 0.822 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -7.646 25.732 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.110 0.890 4 C -0.177 4.177 5 C 0.009 3.991 6 N -0.329 5.329 7 C 0.200 3.800 8 N -0.260 5.260 9 C 0.008 3.992 10 C -0.105 4.105 11 F -0.107 7.107 12 C 0.004 3.996 13 N -0.272 5.272 14 N -0.391 5.391 15 C 0.320 3.680 16 O -0.390 6.390 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.252 0.748 35 H 0.197 0.803 36 H 0.195 0.805 37 H 0.231 0.769 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.499 -5.388 25.118 25.733 hybrid contribution 1.792 -2.797 -0.312 3.337 sum 3.291 -8.185 24.806 26.328 Atomic orbital electron populations 1.22174 0.94967 1.02138 1.02866 1.20751 0.94186 0.97705 0.83078 0.88995 1.22119 0.94409 1.02238 0.98970 1.21449 0.93421 0.97781 0.86488 1.44211 1.01303 1.59364 1.28044 1.19413 0.87495 0.87496 0.85620 1.68061 1.02895 1.23518 1.31565 1.23214 0.91444 0.91484 0.93081 1.19131 0.80018 1.10033 1.01326 1.91518 1.29938 1.95395 1.93838 1.23074 0.86743 0.92362 0.97452 1.67944 1.16633 1.22929 1.19661 1.46135 1.69503 1.13856 1.09590 1.20290 0.76709 0.87222 0.83746 1.90702 1.48131 1.15755 1.84401 1.23536 1.03689 1.04831 0.98413 1.85386 1.86484 1.12928 0.98525 1.22863 1.51088 0.98145 0.96231 0.90970 1.24991 0.95105 0.95537 0.97965 1.70018 1.45600 1.13257 1.21424 0.86172 0.78821 0.79975 0.80559 1.20291 1.20749 1.19699 0.91386 0.92521 0.91853 0.89650 0.90531 0.90671 0.90906 0.74769 0.80273 0.80505 0.76936 0.89270 0.89309 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.48 37.16 0.35 -1.22 16 2 C 0.15 1.49 2.57 -67.93 -0.17 1.31 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 4 C -0.14 -0.91 4.87 -26.73 -0.13 -1.04 16 5 C 0.13 1.11 5.54 -4.04 -0.02 1.09 16 6 N -0.69 -5.65 5.71 -62.28 -0.36 -6.01 16 7 C 0.56 5.70 8.43 -322.71 -2.72 2.98 16 8 N -0.54 -5.87 9.58 -13.86 -0.13 -6.00 16 9 C 0.18 1.58 11.29 -17.15 -0.19 1.39 16 10 C -0.08 -0.64 7.38 -39.18 -0.29 -0.93 16 11 F -0.13 -1.08 17.30 2.25 0.04 -1.04 16 12 C 0.17 1.34 11.29 -17.15 -0.19 1.15 16 13 N -0.55 -5.24 10.46 -13.86 -0.14 -5.38 16 14 N -0.74 -8.87 4.53 -53.81 -0.24 -9.12 16 15 C 0.53 9.48 7.81 -10.98 -0.09 9.39 16 16 O -0.52 -11.23 15.53 5.55 0.09 -11.14 16 17 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 23 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.75 7.75 -51.93 -0.40 0.34 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.41 2.59 8.59 -40.82 -0.35 2.24 16 35 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.18 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.40 3.76 8.60 -40.82 -0.35 3.41 16 38 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 39 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -35.52 367.47 -10.02 -45.54 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.27 Total: 2.06 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -3.04 Total: -1.59 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.14 Total: -51.90 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.52 -10.02 -45.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106228249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.932 kcal (2) G-P(sol) polarization free energy of solvation -35.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds