Wall clock time and date at job start Tue Mar 31 2020 16:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 C 1.52995 * 109.47023 * 119.99594 * 2 1 3 5 5 C 1.52999 * 109.47075 * 185.00349 * 4 2 1 6 6 N 1.46506 * 109.47151 * 179.97438 * 5 4 2 7 7 C 1.38534 * 119.99952 * 179.97438 * 6 5 4 8 8 N 1.32464 * 119.18920 * 359.73204 * 7 6 5 9 9 C 1.32298 * 120.76170 * 179.75809 * 8 7 6 10 10 C 1.38778 * 119.17055 * 0.50658 * 9 8 7 11 11 F 1.35101 * 120.74694 * 179.73057 * 10 9 8 12 12 C 1.38782 * 118.50844 * 359.74762 * 10 9 8 13 13 N 1.32295 * 119.17204 * 359.97438 * 12 10 9 14 14 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 15 15 C 1.34777 * 120.00199 * 85.00207 * 14 2 1 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 2 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 2 18 18 S 1.80999 * 109.46903 * 179.72354 * 17 15 14 19 19 C 1.76200 * 99.99730 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00351 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99941 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00384 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47506 * 89.99666 * 23 21 19 25 25 H 1.48498 * 109.47217 * 210.00061 * 23 21 19 26 26 H 1.48502 * 109.46767 * 329.99807 * 23 21 19 27 27 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 28 28 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 30 30 H 1.09000 * 109.47218 * 305.00067 * 4 2 1 31 31 H 1.09000 * 109.47293 * 65.00233 * 4 2 1 32 32 H 1.09000 * 109.46867 * 299.99933 * 5 4 2 33 33 H 1.09000 * 109.47154 * 59.99799 * 5 4 2 34 34 H 0.97002 * 119.99797 * 359.97438 * 6 5 4 35 35 H 1.08002 * 120.41197 * 180.23154 * 9 8 7 36 36 H 1.08001 * 120.41110 * 179.97438 * 12 10 9 37 37 H 0.97000 * 119.99484 * 264.99304 * 14 2 1 38 38 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 39 39 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 40 40 H 0.97002 * 120.00288 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 7 4.0531 -1.3031 2.5103 7 6 5.4108 -1.3402 2.7830 8 7 6.2537 -0.7510 1.9481 9 6 7.5560 -0.7632 2.1806 10 6 8.0355 -1.4125 3.3096 11 9 9.3596 -1.4494 3.5751 12 6 7.1242 -2.0234 4.1595 13 7 5.8346 -1.9680 3.8696 14 7 2.0183 -0.6906 -1.1961 15 6 2.1471 -0.0183 -2.3571 16 8 1.8582 1.1583 -2.4117 17 6 2.6435 -0.7303 -3.5891 18 16 2.6982 0.4311 -4.9762 19 6 3.2960 -0.6356 -6.2449 20 1 3.5060 -1.6719 -6.0247 21 6 3.4959 -0.1444 -7.5276 22 7 3.2385 1.1182 -7.7964 23 14 4.1289 -1.2754 -8.8728 24 1 2.9801 -1.9138 -9.5641 25 1 4.9194 -0.4864 -9.8515 26 1 4.9906 -2.3251 -8.2720 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6053 -0.2616 2.1370 31 1 1.7516 -1.7714 1.2057 32 1 3.9994 -1.0727 0.4261 33 1 3.8531 0.4372 1.3573 34 1 3.4256 -1.7340 3.1117 35 1 8.2379 -0.2778 1.4980 36 1 7.4636 -2.5376 5.0465 37 1 2.2491 -1.6318 -1.1525 38 1 3.6436 -1.1225 -3.4039 39 1 1.9697 -1.5525 -3.8299 40 1 3.3785 1.4616 -8.6927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106228249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:02 Heat of formation + Delta-G solvation = -56.566873 kcal Electronic energy + Delta-G solvation = -24056.344733 eV Core-core repulsion = 20139.074819 eV Total energy + Delta-G solvation = -3917.269914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.85384 -41.95082 -40.77932 -38.11977 -36.31738 -34.89011 -34.58173 -33.23764 -31.71023 -30.04270 -29.19751 -27.65362 -26.15746 -24.87468 -23.55107 -22.46714 -21.56044 -19.87970 -19.46853 -18.96567 -18.40994 -17.91445 -17.27151 -17.06449 -16.87622 -16.49600 -16.20921 -16.14391 -15.79353 -15.62967 -15.09746 -14.95918 -14.74535 -14.53035 -14.38052 -14.07988 -13.95170 -13.30902 -13.16298 -13.04739 -12.89151 -12.80834 -12.64686 -12.54188 -12.35732 -12.07852 -11.90044 -11.71231 -11.19606 -11.14077 -10.87855 -10.26645 -10.22207 -10.09519 -9.06452 -8.65583 -8.34429 -6.12040 -0.09886 -0.05702 1.27970 1.42229 1.47655 1.58169 1.66472 1.73525 2.26749 2.33944 2.65854 2.95725 2.99615 3.04818 3.33237 3.54995 3.76529 3.80240 3.84193 3.95783 4.04918 4.12372 4.30872 4.45720 4.49094 4.52554 4.61991 4.65074 4.83140 4.90806 5.02573 5.13835 5.26482 5.34711 5.41950 5.57053 5.58578 5.95166 6.20004 6.33232 6.55025 7.06939 7.16074 7.30250 8.74750 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.002432 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.959983 B =11509.238807 C =13537.975957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.146 3.854 3 H 0.067 0.933 4 C -0.121 4.121 5 C 0.138 3.862 6 N -0.683 5.683 7 C 0.541 3.459 8 N -0.567 5.567 9 C 0.168 3.832 10 C -0.079 4.079 11 F -0.129 7.129 12 C 0.177 3.823 13 N -0.558 5.558 14 N -0.709 5.709 15 C 0.536 3.464 16 O -0.564 6.564 17 C -0.131 4.131 18 S -0.151 6.151 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.259 1.259 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.425 0.575 35 H 0.195 0.805 36 H 0.210 0.790 37 H 0.414 0.586 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 -10.381 27.452 29.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.086 0.914 4 C -0.159 4.159 5 C 0.014 3.986 6 N -0.321 5.321 7 C 0.184 3.816 8 N -0.290 5.290 9 C 0.000 4.000 10 C -0.107 4.107 11 F -0.108 7.108 12 C 0.008 3.992 13 N -0.280 5.280 14 N -0.364 5.364 15 C 0.322 3.678 16 O -0.442 6.442 17 C -0.282 4.282 18 S 0.076 5.924 19 C -0.693 4.693 20 H 0.100 0.900 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.183 1.183 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.265 0.735 35 H 0.212 0.788 36 H 0.227 0.773 37 H 0.251 0.749 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.648 -8.174 26.896 28.159 hybrid contribution 1.762 -1.964 -0.680 2.725 sum 3.410 -10.138 26.216 28.314 Atomic orbital electron populations 1.22127 0.94084 1.03148 1.02284 1.20924 0.94797 0.96882 0.83319 0.91445 1.21994 0.92744 1.03447 0.97676 1.21300 0.94611 0.96540 0.86131 1.44129 1.00894 1.59101 1.27968 1.19699 0.88141 0.87774 0.85958 1.68072 1.03762 1.24681 1.32521 1.23528 0.91268 0.91517 0.93723 1.19147 0.80068 1.10132 1.01346 1.91517 1.30012 1.95416 1.93827 1.23613 0.86092 0.91522 0.97994 1.68029 1.17378 1.23204 1.19439 1.45902 1.67521 1.14473 1.08480 1.19977 0.76623 0.86563 0.84657 1.90692 1.50577 1.17717 1.85186 1.23384 1.05373 1.03196 0.96251 1.85556 1.86860 1.17388 1.02574 1.23196 1.50999 0.98430 0.96722 0.90036 1.26125 0.95093 0.97209 1.00769 1.70184 1.46908 1.15514 1.22169 0.84961 0.78446 0.77761 0.76859 1.19278 1.20307 1.18251 0.94998 0.90643 0.89468 0.87181 0.88016 0.92255 0.92812 0.73545 0.78779 0.77336 0.74911 0.87607 0.87353 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.48 71.98 0.68 -2.06 16 2 C 0.15 2.70 2.57 44.99 0.12 2.82 16 3 H 0.07 1.64 7.58 -2.38 -0.02 1.62 16 4 C -0.12 -1.21 4.87 30.59 0.15 -1.06 16 5 C 0.14 2.13 5.54 86.38 0.48 2.61 16 6 N -0.68 -9.93 5.71 -350.97 -2.00 -11.93 16 7 C 0.54 10.48 8.43 261.45 2.20 12.68 16 8 N -0.57 -12.14 9.58 -197.78 -1.90 -14.03 16 9 C 0.17 2.91 11.29 84.75 0.96 3.87 16 10 C -0.08 -1.22 7.38 22.53 0.17 -1.06 16 11 F -0.13 -2.01 17.30 44.97 0.78 -1.24 16 12 C 0.18 2.41 11.29 84.75 0.96 3.37 16 13 N -0.56 -9.70 10.46 -197.78 -2.07 -11.77 16 14 N -0.71 -16.12 4.53 -442.53 -2.00 -18.13 16 15 C 0.54 19.07 7.81 87.66 0.68 19.76 16 16 O -0.56 -25.46 15.53 -3.04 -0.05 -25.51 16 17 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 18 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 19 C -0.55 -31.24 9.50 67.95 0.65 -30.60 16 20 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 21 C 0.01 0.73 5.49 84.86 0.47 1.19 16 22 N -0.91 -56.19 13.22 21.65 0.29 -55.91 16 23 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 26 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 27 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 1.11 7.75 -2.39 -0.02 1.09 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.43 4.18 8.59 -92.71 -0.80 3.39 16 35 H 0.20 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.21 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.41 6.73 8.60 -92.71 -0.80 5.93 16 38 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 39 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 40 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -80.93 367.47 1.35 -79.59 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -0.51 Total: 15.90 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 7.94 Total: 6.83 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -7.69 Total: -111.77 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.05 Total: -25.51 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.78 Total: -1.24 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -80.93 1.35 -79.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106228249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.019 kcal (2) G-P(sol) polarization free energy of solvation -80.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds