Wall clock time and date at job start Tue Mar 31 2020 16:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.46745 * 2 1 4 4 C 1.52997 * 109.47072 * 120.00624 * 2 1 3 5 5 C 1.53004 * 109.47000 * 184.99738 * 4 2 1 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 2 7 7 C 1.38569 * 119.99727 * 180.27658 * 6 5 4 8 8 C 1.39468 * 120.51869 * 359.72501 * 7 6 5 9 9 C 1.38464 * 118.31384 * 179.97438 * 8 7 6 10 10 F 1.35102 * 120.43148 * 179.97438 * 9 8 7 11 11 N 1.32787 * 119.13907 * 359.97438 * 9 8 7 12 12 C 1.31759 * 120.96131 * 0.02562 * 11 9 8 13 13 N 1.31757 * 121.86467 * 359.73194 * 12 11 9 14 14 N 1.46496 * 109.46451 * 240.00353 * 2 1 3 15 15 C 1.34777 * 120.00102 * 85.00090 * 14 2 1 16 16 O 1.21280 * 119.99969 * 359.97438 * 15 14 2 17 17 C 1.50706 * 120.00180 * 179.97438 * 15 14 2 18 18 S 1.80994 * 109.47183 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99994 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00117 * 0.02562 * 19 18 17 21 21 C 1.38792 * 119.99990 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00067 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99978 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47369 * 90.00088 * 23 21 19 25 25 H 1.48502 * 109.47271 * 210.00049 * 23 21 19 26 26 H 1.48494 * 109.47019 * 329.99943 * 23 21 19 27 27 H 1.08999 * 109.47409 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47019 * 299.99619 * 1 2 3 29 29 H 1.08996 * 109.47178 * 59.99299 * 1 2 3 30 30 H 1.08995 * 109.47672 * 65.00068 * 4 2 1 31 31 H 1.09006 * 109.46819 * 304.99498 * 4 2 1 32 32 H 1.09009 * 109.46730 * 59.99606 * 5 4 2 33 33 H 1.08998 * 109.46846 * 300.00150 * 5 4 2 34 34 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 35 35 H 1.08007 * 120.83956 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.06833 * 179.97438 * 12 11 9 37 37 H 0.97008 * 120.00047 * 264.99289 * 14 2 1 38 38 H 1.08999 * 109.47165 * 300.00539 * 17 15 14 39 39 H 1.08997 * 109.46796 * 59.99800 * 17 15 14 40 40 H 0.97010 * 119.99938 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5649 -0.6135 1.3135 6 7 4.0532 -1.3037 2.5099 7 6 5.4108 -1.3355 2.7858 8 6 6.3223 -0.7189 1.9289 9 6 7.6681 -0.7783 2.2489 10 9 8.5880 -0.1962 1.4488 11 7 8.0429 -1.4147 3.3524 12 6 7.1547 -1.9865 4.1400 13 7 5.8645 -1.9497 3.8753 14 7 2.0182 -0.6905 -1.1962 15 6 2.1469 -0.0181 -2.3572 16 8 1.8581 1.1585 -2.4117 17 6 2.6496 -0.7284 -3.5876 18 16 2.7096 0.4345 -4.9733 19 6 3.3126 -0.6307 -6.2408 20 1 3.5220 -1.6671 -6.0208 21 6 3.5185 -0.1378 -7.5218 22 7 3.2638 1.1255 -7.7897 23 14 4.1572 -1.2672 -8.8657 24 1 3.0113 -1.9040 -9.5631 25 1 4.9525 -0.4772 -9.8397 26 1 5.0156 -2.3181 -8.2625 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.7517 -1.7716 1.2055 31 1 1.6054 -0.2618 2.1369 32 1 3.8532 0.4369 1.3572 33 1 3.9994 -1.0729 0.4258 34 1 3.4258 -1.7346 3.1113 35 1 5.9868 -0.2082 1.0384 36 1 7.4935 -2.4964 5.0297 37 1 2.2490 -1.6318 -1.1527 38 1 3.6489 -1.1203 -3.3981 39 1 1.9773 -1.5506 -3.8326 40 1 3.4074 1.4700 -8.6852 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106230392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:37 Heat of formation + Delta-G solvation = -35.229596 kcal Electronic energy + Delta-G solvation = -24216.030493 eV Core-core repulsion = 20299.685833 eV Total energy + Delta-G solvation = -3916.344660 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -49.42100 -41.22532 -39.61826 -37.62123 -35.78919 -33.38276 -32.46161 -32.19885 -31.24098 -29.13488 -28.52679 -25.52201 -25.29094 -24.12872 -22.95610 -21.62983 -20.45377 -19.06637 -18.60121 -17.87696 -16.75229 -16.55586 -16.43705 -16.01280 -15.88908 -15.75611 -15.36440 -14.98899 -14.83100 -14.68328 -14.39636 -14.00268 -13.99465 -13.69093 -13.32413 -13.02454 -12.72366 -12.39078 -12.26950 -12.04536 -11.65713 -11.37962 -11.20016 -11.13413 -11.09032 -11.05232 -10.78636 -10.17816 -9.85933 -9.84973 -9.47703 -9.11218 -9.04372 -8.74709 -8.28331 -6.54070 -6.24893 -3.95866 0.49155 0.81660 2.36530 2.95371 3.00198 3.05504 3.20327 3.25655 3.29350 3.35624 3.63222 3.80585 4.16331 4.17526 4.23101 4.49071 4.53585 4.68715 4.82972 5.02354 5.06345 5.10187 5.11097 5.17651 5.19174 5.36452 5.45147 5.50369 5.60187 5.80388 5.82246 5.88732 6.07144 6.08955 6.14574 6.53502 6.60980 6.96450 7.56228 7.59356 7.69876 8.31919 8.51948 9.20681 10.82479 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.011030 B = 0.002587 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.009684 B =10818.847213 C =12763.189698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.136 4.136 5 C 0.116 3.884 6 N -0.703 5.703 7 C 0.462 3.538 8 C -0.316 4.316 9 C 0.386 3.614 10 F -0.099 7.099 11 N -0.594 5.594 12 C 0.375 3.625 13 N -0.586 5.586 14 N -0.738 5.738 15 C 0.533 3.467 16 O -0.515 6.515 17 C -0.155 4.155 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.412 0.588 35 H 0.156 0.844 36 H 0.207 0.793 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.296 -7.346 24.719 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.110 0.890 4 C -0.175 4.175 5 C -0.008 4.008 6 N -0.334 5.334 7 C 0.218 3.782 8 C -0.346 4.346 9 C 0.228 3.772 10 F -0.078 7.078 11 N -0.319 5.319 12 C 0.085 3.915 13 N -0.312 5.312 14 N -0.393 5.393 15 C 0.320 3.680 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.248 0.752 35 H 0.174 0.826 36 H 0.223 0.777 37 H 0.231 0.769 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.063 -5.506 25.019 25.617 hybrid contribution 0.553 -2.194 -1.499 2.714 sum 0.616 -7.700 23.519 24.756 Atomic orbital electron populations 1.22173 0.94832 1.02223 1.02952 1.20769 0.94393 0.97655 0.83021 0.88953 1.22082 0.93696 1.02538 0.99166 1.21665 0.94852 0.97598 0.86637 1.44569 1.02701 1.58616 1.27503 1.18253 0.86003 0.86453 0.87531 1.21877 0.92339 1.13504 1.06892 1.18018 0.84209 0.88571 0.86358 1.91688 1.66157 1.80136 1.69811 1.67859 1.41336 1.16263 1.06478 1.24521 0.82314 0.89122 0.95514 1.68010 1.18354 1.24930 1.19860 1.46167 1.69628 1.13892 1.09598 1.20321 0.76756 0.87228 0.83731 1.90708 1.48065 1.15740 1.84312 1.23542 1.03632 1.04924 0.98440 1.85395 1.86331 1.12828 0.98749 1.22855 1.51067 0.98131 0.96366 0.90949 1.24991 0.95064 0.95535 0.97975 1.70015 1.45529 1.13189 1.21524 0.86170 0.78840 0.79964 0.80545 1.20267 1.20721 1.19682 0.92461 0.91807 0.91318 0.90272 0.89397 0.90769 0.90613 0.75166 0.82637 0.77655 0.76895 0.89281 0.89253 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 2 C 0.15 1.29 2.57 -67.93 -0.17 1.12 16 3 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 4 C -0.14 -0.70 4.87 -26.73 -0.13 -0.83 16 5 C 0.12 0.72 4.81 -4.04 -0.02 0.70 16 6 N -0.70 -4.53 5.71 -60.29 -0.34 -4.87 16 7 C 0.46 4.12 7.71 -154.76 -1.19 2.92 16 8 C -0.32 -3.05 9.39 -39.04 -0.37 -3.42 16 9 C 0.39 4.27 8.50 -17.06 -0.14 4.12 16 10 F -0.10 -1.17 17.30 2.25 0.04 -1.13 16 11 N -0.59 -6.38 10.45 -14.99 -0.16 -6.53 16 12 C 0.37 3.14 12.28 -92.22 -1.13 2.01 16 13 N -0.59 -5.31 10.47 -13.84 -0.14 -5.45 16 14 N -0.74 -8.00 4.53 -53.81 -0.24 -8.24 16 15 C 0.53 8.93 7.81 -10.98 -0.09 8.85 16 16 O -0.51 -10.72 15.52 5.56 0.09 -10.64 16 17 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 18 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 19 C -0.54 -15.00 9.50 30.94 0.29 -14.70 16 20 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 23 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.51 7.97 -51.92 -0.41 0.09 16 33 H 0.08 0.53 7.59 -51.93 -0.39 0.14 16 34 H 0.41 2.08 8.60 -40.82 -0.35 1.73 16 35 H 0.16 1.36 6.86 -52.48 -0.36 1.00 16 36 H 0.21 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.40 3.26 8.60 -40.82 -0.35 2.91 16 38 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 39 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -35.18 365.59 -9.42 -44.61 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.19 Total: 0.54 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.47 Total: -1.04 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.16 Total: -50.24 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.18 -9.42 -44.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106230392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.375 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds