Wall clock time and date at job start Tue Mar 31 2020 16:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.46745 * 2 1 4 4 C 1.52997 * 109.47072 * 120.00624 * 2 1 3 5 5 C 1.53004 * 109.47000 * 184.99738 * 4 2 1 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 2 7 7 C 1.38569 * 119.99727 * 180.27658 * 6 5 4 8 8 C 1.39468 * 120.51869 * 359.72501 * 7 6 5 9 9 C 1.38464 * 118.31384 * 179.97438 * 8 7 6 10 10 F 1.35102 * 120.43148 * 179.97438 * 9 8 7 11 11 N 1.32787 * 119.13907 * 359.97438 * 9 8 7 12 12 C 1.31759 * 120.96131 * 0.02562 * 11 9 8 13 13 N 1.31757 * 121.86467 * 359.73194 * 12 11 9 14 14 N 1.46496 * 109.46451 * 240.00353 * 2 1 3 15 15 C 1.34777 * 120.00102 * 85.00090 * 14 2 1 16 16 O 1.21280 * 119.99969 * 359.97438 * 15 14 2 17 17 C 1.50706 * 120.00180 * 179.97438 * 15 14 2 18 18 S 1.80994 * 109.47183 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99994 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00117 * 0.02562 * 19 18 17 21 21 C 1.38792 * 119.99990 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00067 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99978 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47369 * 90.00088 * 23 21 19 25 25 H 1.48502 * 109.47271 * 210.00049 * 23 21 19 26 26 H 1.48494 * 109.47019 * 329.99943 * 23 21 19 27 27 H 1.08999 * 109.47409 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47019 * 299.99619 * 1 2 3 29 29 H 1.08996 * 109.47178 * 59.99299 * 1 2 3 30 30 H 1.08995 * 109.47672 * 65.00068 * 4 2 1 31 31 H 1.09006 * 109.46819 * 304.99498 * 4 2 1 32 32 H 1.09009 * 109.46730 * 59.99606 * 5 4 2 33 33 H 1.08998 * 109.46846 * 300.00150 * 5 4 2 34 34 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 35 35 H 1.08007 * 120.83956 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.06833 * 179.97438 * 12 11 9 37 37 H 0.97008 * 120.00047 * 264.99289 * 14 2 1 38 38 H 1.08999 * 109.47165 * 300.00539 * 17 15 14 39 39 H 1.08997 * 109.46796 * 59.99800 * 17 15 14 40 40 H 0.97010 * 119.99938 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5649 -0.6135 1.3135 6 7 4.0532 -1.3037 2.5099 7 6 5.4108 -1.3355 2.7858 8 6 6.3223 -0.7189 1.9289 9 6 7.6681 -0.7783 2.2489 10 9 8.5880 -0.1962 1.4488 11 7 8.0429 -1.4147 3.3524 12 6 7.1547 -1.9865 4.1400 13 7 5.8645 -1.9497 3.8753 14 7 2.0182 -0.6905 -1.1962 15 6 2.1469 -0.0181 -2.3572 16 8 1.8581 1.1585 -2.4117 17 6 2.6496 -0.7284 -3.5876 18 16 2.7096 0.4345 -4.9733 19 6 3.3126 -0.6307 -6.2408 20 1 3.5220 -1.6671 -6.0208 21 6 3.5185 -0.1378 -7.5218 22 7 3.2638 1.1255 -7.7897 23 14 4.1572 -1.2672 -8.8657 24 1 3.0113 -1.9040 -9.5631 25 1 4.9525 -0.4772 -9.8397 26 1 5.0156 -2.3181 -8.2625 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.7517 -1.7716 1.2055 31 1 1.6054 -0.2618 2.1369 32 1 3.8532 0.4369 1.3572 33 1 3.9994 -1.0729 0.4258 34 1 3.4258 -1.7346 3.1113 35 1 5.9868 -0.2082 1.0384 36 1 7.4935 -2.4964 5.0297 37 1 2.2490 -1.6318 -1.1527 38 1 3.6489 -1.1203 -3.3981 39 1 1.9773 -1.5506 -3.8326 40 1 3.4074 1.4700 -8.6852 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106230392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:36 Heat of formation + Delta-G solvation = -59.888123 kcal Electronic energy + Delta-G solvation = -24217.099767 eV Core-core repulsion = 20299.685833 eV Total energy + Delta-G solvation = -3917.413934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.26244 -41.90177 -40.79241 -38.37552 -36.68190 -34.58784 -34.12864 -33.13907 -32.07862 -30.17200 -29.46473 -27.65718 -25.94800 -24.85200 -23.60918 -22.48023 -21.56694 -19.93416 -19.64841 -19.32489 -17.92208 -17.44251 -17.36730 -16.88302 -16.76031 -16.66016 -16.50606 -16.23656 -16.20037 -15.73072 -15.34456 -14.99565 -14.82223 -14.69305 -14.55591 -14.36068 -13.96164 -13.31140 -13.16759 -13.05772 -12.92558 -12.89469 -12.58737 -12.40471 -12.05219 -11.87458 -11.80362 -11.71536 -11.14649 -10.90466 -10.87364 -10.57374 -10.26771 -10.10932 -9.36365 -8.65876 -8.35131 -6.12482 -0.22626 0.11510 1.27781 1.41656 1.47461 1.57692 1.65822 1.77296 2.26103 2.33170 2.33260 2.66644 2.99185 3.20159 3.32697 3.52974 3.69458 3.86981 3.97579 4.01810 4.07192 4.13456 4.30891 4.42507 4.47784 4.52660 4.53156 4.58216 4.82258 4.87076 4.97761 5.11748 5.20494 5.34568 5.41568 5.49097 5.57674 5.95281 6.19373 6.45041 6.54943 7.03898 7.06624 7.30019 8.73916 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.011030 B = 0.002587 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.009684 B =10818.847213 C =12763.189698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.071 0.929 4 C -0.120 4.120 5 C 0.115 3.885 6 N -0.686 5.686 7 C 0.458 3.542 8 C -0.321 4.321 9 C 0.366 3.634 10 F -0.112 7.112 11 N -0.616 5.616 12 C 0.376 3.624 13 N -0.591 5.591 14 N -0.710 5.710 15 C 0.536 3.464 16 O -0.563 6.563 17 C -0.132 4.132 18 S -0.152 6.152 19 C -0.545 4.545 20 H 0.082 0.918 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.259 1.259 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.030 0.970 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.422 0.578 35 H 0.159 0.841 36 H 0.242 0.758 37 H 0.415 0.585 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.151 -10.100 26.534 28.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.089 0.911 4 C -0.158 4.158 5 C -0.008 4.008 6 N -0.318 5.318 7 C 0.212 3.788 8 C -0.351 4.351 9 C 0.209 3.791 10 F -0.091 7.091 11 N -0.342 5.342 12 C 0.087 3.913 13 N -0.317 5.317 14 N -0.364 5.364 15 C 0.322 3.678 16 O -0.441 6.441 17 C -0.283 4.283 18 S 0.075 5.925 19 C -0.693 4.693 20 H 0.100 0.900 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.818 3.182 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.182 1.182 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.049 0.951 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.261 0.739 35 H 0.177 0.823 36 H 0.258 0.742 37 H 0.252 0.748 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.408 -8.314 26.889 28.148 hybrid contribution 0.626 -1.369 -1.897 2.422 sum 0.218 -9.682 24.992 26.803 Atomic orbital electron populations 1.22135 0.94334 1.03096 1.02245 1.20941 0.94725 0.97038 0.83298 0.91101 1.21963 0.92541 1.03585 0.97673 1.21664 0.95667 0.97175 0.86329 1.44503 1.01908 1.57901 1.27462 1.18417 0.86787 0.86181 0.87384 1.21928 0.91994 1.13867 1.07338 1.18271 0.84619 0.89354 0.86838 1.91649 1.66654 1.80508 1.70246 1.67895 1.42339 1.17153 1.06852 1.25279 0.81957 0.88198 0.95843 1.68112 1.18594 1.25138 1.19808 1.45912 1.67588 1.14526 1.08411 1.19965 0.76666 0.86543 0.84636 1.90700 1.50526 1.17740 1.85106 1.23396 1.05441 1.03195 0.96287 1.85560 1.86681 1.17353 1.02856 1.23196 1.50807 0.98442 0.96876 0.90004 1.26106 0.95130 0.97156 1.00770 1.70181 1.46941 1.15422 1.22217 0.84979 0.78437 0.77802 0.76939 1.19291 1.20396 1.18245 0.90732 0.89525 0.95088 0.87954 0.87086 0.91458 0.91187 0.73946 0.82290 0.74180 0.74791 0.87406 0.87417 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.48 71.98 0.68 -1.77 16 2 C 0.14 2.23 2.57 44.99 0.12 2.35 16 3 H 0.07 1.47 7.58 -2.39 -0.02 1.45 16 4 C -0.12 -0.76 4.87 30.59 0.15 -0.62 16 5 C 0.12 1.13 4.81 86.38 0.42 1.54 16 6 N -0.69 -6.86 5.71 -344.65 -1.97 -8.83 16 7 C 0.46 7.31 7.71 133.10 1.03 8.33 16 8 C -0.32 -5.98 9.39 22.62 0.21 -5.77 16 9 C 0.37 8.10 8.50 84.60 0.72 8.82 16 10 F -0.11 -2.71 17.30 44.97 0.78 -1.93 16 11 N -0.62 -12.84 10.45 -201.33 -2.10 -14.94 16 12 C 0.38 5.65 12.28 180.91 2.22 7.87 16 13 N -0.59 -9.46 10.47 -197.69 -2.07 -11.53 16 14 N -0.71 -13.96 4.53 -442.54 -2.00 -15.96 16 15 C 0.54 17.75 7.81 87.66 0.68 18.43 16 16 O -0.56 -24.15 15.52 -3.03 -0.05 -24.19 16 17 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 18 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 19 C -0.55 -30.74 9.50 67.95 0.65 -30.10 16 20 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 21 C 0.01 0.74 5.49 84.86 0.47 1.21 16 22 N -0.91 -55.69 13.22 21.65 0.29 -55.41 16 23 Si 1.00 43.34 29.55 68.60 2.03 45.37 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.07 0.80 7.97 -2.38 -0.02 0.78 16 33 H 0.07 0.80 7.59 -2.39 -0.02 0.78 16 34 H 0.42 2.68 8.60 -92.71 -0.80 1.88 16 35 H 0.16 2.72 6.86 -2.91 -0.02 2.70 16 36 H 0.24 1.51 8.06 -2.91 -0.02 1.48 16 37 H 0.41 5.40 8.60 -92.70 -0.80 4.60 16 38 H 0.11 3.61 8.14 -2.40 -0.02 3.59 16 39 H 0.11 3.61 8.14 -2.40 -0.02 3.59 16 40 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -80.64 365.59 1.01 -79.63 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -0.50 Total: 11.36 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 7.78 Total: 5.82 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -7.86 Total: -106.67 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.05 Total: -24.19 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -80.64 1.01 -79.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106230392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.744 kcal (2) G-P(sol) polarization free energy of solvation -80.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds