Wall clock time and date at job start Tue Mar 31 2020 16:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47296 * 2 1 4 4 C 1.46500 * 119.99679 * 90.00379 * 3 2 1 5 5 C 1.52997 * 109.47473 * 90.00212 * 4 3 2 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.38536 * 119.99947 * 179.97438 * 6 5 4 8 8 N 1.32453 * 119.18662 * 359.73364 * 7 6 5 9 9 C 1.32300 * 120.76647 * 179.75700 * 8 7 6 10 10 C 1.38795 * 119.16166 * 0.50564 * 9 8 7 11 11 F 1.35101 * 120.73836 * 179.72839 * 10 9 8 12 12 C 1.38775 * 118.50921 * 359.74748 * 10 9 8 13 13 N 1.32301 * 119.17159 * 0.02562 * 12 10 9 14 14 C 1.34774 * 120.00048 * 270.00344 * 3 2 1 15 15 O 1.21286 * 119.99764 * 179.97438 * 14 3 2 16 16 C 1.50697 * 120.00258 * 0.02562 * 14 3 2 17 17 S 1.81001 * 109.47081 * 180.02562 * 16 14 3 18 18 C 1.76207 * 99.99686 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99614 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00215 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99805 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46932 * 59.99428 * 22 20 18 24 24 H 1.48494 * 109.46995 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46681 * 299.99697 * 22 20 18 26 26 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47084 * 299.99552 * 1 2 3 28 28 H 1.08999 * 109.47010 * 59.99976 * 1 2 3 29 29 H 1.09001 * 109.47084 * 240.00448 * 2 1 3 30 30 H 1.08998 * 109.47584 * 120.00522 * 2 1 3 31 31 H 1.09002 * 109.47129 * 329.99954 * 4 3 2 32 32 H 1.08998 * 109.46845 * 210.00761 * 4 3 2 33 33 H 1.09002 * 109.47153 * 59.99757 * 5 4 3 34 34 H 1.09001 * 109.46832 * 299.99948 * 5 4 3 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 1.07992 * 120.42390 * 180.22849 * 9 8 7 37 37 H 1.08004 * 120.41176 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.46816 * 299.99717 * 16 14 3 39 39 H 1.08991 * 109.47311 * 59.99425 * 16 14 3 40 40 H 0.97005 * 120.00318 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.7076 1.8313 1.7104 6 7 3.9520 2.5224 2.9789 7 6 5.1985 2.4486 3.5789 8 7 6.1560 1.7445 2.9945 9 6 7.3592 1.6569 3.5376 10 6 7.6077 2.3055 4.7393 11 9 8.8230 2.2328 5.3248 12 6 6.5796 3.0298 5.3259 13 7 5.4015 3.0792 4.7258 14 6 2.2429 2.0166 -1.1672 15 8 2.6468 3.1602 -1.1671 16 6 1.9912 1.3065 -2.4723 17 16 2.3841 2.4152 -3.8480 18 6 2.0105 1.3592 -5.2082 19 1 1.6553 0.3549 -5.0305 20 6 2.1738 1.8179 -6.5080 21 7 2.6072 3.0417 -6.7246 22 14 1.7771 0.6986 -7.9501 23 1 0.3484 0.2983 -7.8876 24 1 2.0332 1.4207 -9.2221 25 1 2.6338 -0.5127 -7.8867 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.5818 1.6876 2.0284 32 1 2.0955 3.1409 1.1385 33 1 4.3884 2.2155 0.9507 34 1 3.8746 0.7621 1.8407 35 1 3.2408 3.0309 3.3989 36 1 8.1370 1.0843 3.0544 37 1 6.7390 3.5461 6.2611 38 1 2.6210 0.4188 -2.5303 39 1 0.9432 1.0127 -2.5298 40 1 2.7209 3.3624 -7.6330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106694094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:12 Heat of formation + Delta-G solvation = -19.132595 kcal Electronic energy + Delta-G solvation = -24316.789332 eV Core-core repulsion = 20401.142690 eV Total energy + Delta-G solvation = -3915.646642 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = -0.79 seconds Orbital eigenvalues (eV) -49.16351 -41.23087 -39.73535 -36.77201 -35.60724 -34.16355 -32.44553 -32.09026 -30.28643 -29.66907 -27.53509 -25.53215 -25.36646 -23.83895 -23.37378 -22.62651 -19.39886 -18.58804 -18.26747 -17.72611 -17.68583 -16.79135 -16.36994 -16.22789 -15.68840 -15.22851 -14.92475 -14.81992 -14.79038 -14.34801 -14.12486 -13.89655 -13.81503 -13.43888 -13.39951 -13.00535 -12.59488 -12.32829 -12.08256 -12.03625 -11.91068 -11.60626 -11.33055 -11.19612 -11.05875 -11.04483 -10.78199 -10.44567 -9.83659 -9.49377 -9.45565 -9.07410 -8.72925 -8.33502 -8.25344 -6.52282 -6.22956 -3.94003 0.62922 0.63468 2.30324 2.93586 3.00593 3.22256 3.24751 3.28066 3.39790 3.56254 3.63978 3.73586 4.18712 4.24364 4.47077 4.57783 4.62402 4.69800 4.83419 5.02379 5.11359 5.13491 5.21626 5.24592 5.30240 5.49685 5.61589 5.70336 5.73714 5.75898 5.88116 5.94153 6.01383 6.17851 6.27617 6.53053 6.65287 7.01945 7.41981 7.57741 7.86947 8.33392 8.46813 9.22168 10.84390 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.017321 B = 0.002240 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.182201 B =12495.806330 C =13392.262140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 N -0.617 5.617 4 C 0.108 3.892 5 C 0.119 3.881 6 N -0.688 5.688 7 C 0.561 3.439 8 N -0.540 5.540 9 C 0.177 3.823 10 C -0.080 4.080 11 F -0.129 7.129 12 C 0.175 3.825 13 N -0.549 5.549 14 C 0.535 3.465 15 O -0.511 6.511 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.416 0.584 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.941 -6.230 24.291 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.017 4.017 3 N -0.353 5.353 4 C -0.017 4.017 5 C -0.006 4.006 6 N -0.324 5.324 7 C 0.204 3.796 8 N -0.262 5.262 9 C 0.007 3.993 10 C -0.108 4.108 11 F -0.108 7.108 12 C 0.005 3.995 13 N -0.271 5.271 14 C 0.323 3.677 15 O -0.385 6.385 16 C -0.300 4.300 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.254 0.746 36 H 0.196 0.804 37 H 0.195 0.805 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.621 -4.444 23.497 24.057 hybrid contribution 0.081 -1.967 -0.226 1.982 sum 2.702 -6.411 23.272 24.289 Atomic orbital electron populations 1.22224 0.95816 1.02303 1.02778 1.21585 0.94565 0.82144 1.03439 1.47873 1.67820 1.14656 1.04961 1.21397 0.94333 0.99874 0.86068 1.21804 0.97741 0.97154 0.83946 1.44006 1.08524 1.55621 1.24249 1.19340 0.87264 0.87149 0.85847 1.68036 1.00790 1.22355 1.35045 1.23174 0.93641 0.92700 0.89757 1.19118 0.84094 1.09256 0.98297 1.91511 1.40406 1.95416 1.83448 1.23075 0.86027 0.92051 0.98353 1.67947 1.23569 1.24868 1.10672 1.20416 0.76226 0.86487 0.84599 1.90713 1.43585 1.17458 1.86724 1.23577 1.04858 1.04555 0.97057 1.85417 1.86841 1.17894 0.93366 1.22805 1.51898 1.01474 0.92171 0.90972 1.24990 0.94645 0.95542 0.98377 1.70003 1.42816 1.15653 1.21792 0.86231 0.78953 0.80047 0.80317 1.19937 1.20812 1.19914 0.91489 0.92517 0.91797 0.89670 0.90548 0.90197 0.89089 0.90387 0.91169 0.74629 0.80404 0.80494 0.89171 0.89124 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.24 37.16 0.38 -1.16 16 2 C 0.11 1.02 5.93 -4.04 -0.02 0.99 16 3 N -0.62 -7.87 2.47 -173.69 -0.43 -8.29 16 4 C 0.11 1.12 5.52 -4.04 -0.02 1.10 16 5 C 0.12 1.29 5.97 -4.04 -0.02 1.26 16 6 N -0.69 -6.89 5.71 -62.29 -0.36 -7.24 16 7 C 0.56 6.38 8.43 -322.73 -2.72 3.66 16 8 N -0.54 -6.25 9.58 -13.87 -0.13 -6.38 16 9 C 0.18 1.63 11.30 -17.14 -0.19 1.43 16 10 C -0.08 -0.69 7.38 -39.18 -0.29 -0.98 16 11 F -0.13 -1.11 17.30 2.25 0.04 -1.07 16 12 C 0.17 1.46 11.29 -17.15 -0.19 1.27 16 13 N -0.55 -5.75 10.46 -13.87 -0.14 -5.89 16 14 C 0.53 9.64 7.69 -10.99 -0.08 9.55 16 15 O -0.51 -11.22 15.44 5.55 0.09 -11.13 16 16 C -0.15 -2.94 4.71 36.00 0.17 -2.77 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 19 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 22 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.70 7.22 -51.93 -0.37 0.32 16 29 H 0.08 0.86 6.44 -51.93 -0.33 0.52 16 30 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 31 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 32 H 0.09 1.10 7.42 -51.93 -0.39 0.71 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.42 3.39 8.59 -40.82 -0.35 3.04 16 36 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.18 0.90 8.06 -52.48 -0.42 0.47 16 38 H 0.09 1.64 7.40 -51.91 -0.38 1.25 16 39 H 0.09 1.65 7.18 -51.92 -0.37 1.27 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -35.16 364.27 -9.88 -45.03 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.12 Total: 0.86 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.80 Total: 1.61 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.33 Total: -53.09 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.16 -9.88 -45.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106694094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.898 kcal (2) G-P(sol) polarization free energy of solvation -35.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.79 seconds