Wall clock time and date at job start Tue Mar 31 2020 16:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47296 * 2 1 4 4 C 1.46500 * 119.99679 * 90.00379 * 3 2 1 5 5 C 1.52997 * 109.47473 * 90.00212 * 4 3 2 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.38536 * 119.99947 * 179.97438 * 6 5 4 8 8 N 1.32453 * 119.18662 * 359.73364 * 7 6 5 9 9 C 1.32300 * 120.76647 * 179.75700 * 8 7 6 10 10 C 1.38795 * 119.16166 * 0.50564 * 9 8 7 11 11 F 1.35101 * 120.73836 * 179.72839 * 10 9 8 12 12 C 1.38775 * 118.50921 * 359.74748 * 10 9 8 13 13 N 1.32301 * 119.17159 * 0.02562 * 12 10 9 14 14 C 1.34774 * 120.00048 * 270.00344 * 3 2 1 15 15 O 1.21286 * 119.99764 * 179.97438 * 14 3 2 16 16 C 1.50697 * 120.00258 * 0.02562 * 14 3 2 17 17 S 1.81001 * 109.47081 * 180.02562 * 16 14 3 18 18 C 1.76207 * 99.99686 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99614 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00215 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99805 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46932 * 59.99428 * 22 20 18 24 24 H 1.48494 * 109.46995 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46681 * 299.99697 * 22 20 18 26 26 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47084 * 299.99552 * 1 2 3 28 28 H 1.08999 * 109.47010 * 59.99976 * 1 2 3 29 29 H 1.09001 * 109.47084 * 240.00448 * 2 1 3 30 30 H 1.08998 * 109.47584 * 120.00522 * 2 1 3 31 31 H 1.09002 * 109.47129 * 329.99954 * 4 3 2 32 32 H 1.08998 * 109.46845 * 210.00761 * 4 3 2 33 33 H 1.09002 * 109.47153 * 59.99757 * 5 4 3 34 34 H 1.09001 * 109.46832 * 299.99948 * 5 4 3 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 1.07992 * 120.42390 * 180.22849 * 9 8 7 37 37 H 1.08004 * 120.41176 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.46816 * 299.99717 * 16 14 3 39 39 H 1.08991 * 109.47311 * 59.99425 * 16 14 3 40 40 H 0.97005 * 120.00318 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.7076 1.8313 1.7104 6 7 3.9520 2.5224 2.9789 7 6 5.1985 2.4486 3.5789 8 7 6.1560 1.7445 2.9945 9 6 7.3592 1.6569 3.5376 10 6 7.6077 2.3055 4.7393 11 9 8.8230 2.2328 5.3248 12 6 6.5796 3.0298 5.3259 13 7 5.4015 3.0792 4.7258 14 6 2.2429 2.0166 -1.1672 15 8 2.6468 3.1602 -1.1671 16 6 1.9912 1.3065 -2.4723 17 16 2.3841 2.4152 -3.8480 18 6 2.0105 1.3592 -5.2082 19 1 1.6553 0.3549 -5.0305 20 6 2.1738 1.8179 -6.5080 21 7 2.6072 3.0417 -6.7246 22 14 1.7771 0.6986 -7.9501 23 1 0.3484 0.2983 -7.8876 24 1 2.0332 1.4207 -9.2221 25 1 2.6338 -0.5127 -7.8867 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.5818 1.6876 2.0284 32 1 2.0955 3.1409 1.1385 33 1 4.3884 2.2155 0.9507 34 1 3.8746 0.7621 1.8407 35 1 3.2408 3.0309 3.3989 36 1 8.1370 1.0843 3.0544 37 1 6.7390 3.5461 6.2611 38 1 2.6210 0.4188 -2.5303 39 1 0.9432 1.0127 -2.5298 40 1 2.7209 3.3624 -7.6330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106694094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:10 Heat of formation + Delta-G solvation = -41.472835 kcal Electronic energy + Delta-G solvation = -24317.758077 eV Core-core repulsion = 20401.142690 eV Total energy + Delta-G solvation = -3916.615387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.85545 -41.97780 -41.00331 -37.79122 -36.63428 -34.90828 -34.58312 -32.95915 -31.17416 -30.95859 -28.59052 -27.62904 -26.12714 -24.65375 -24.27990 -23.52975 -20.62395 -19.68295 -19.29001 -19.03369 -18.42326 -18.10804 -17.34768 -17.08763 -16.87829 -16.73725 -16.06488 -16.01033 -15.90631 -15.44440 -15.08065 -14.99522 -14.82497 -14.55472 -14.41987 -14.12408 -14.05771 -13.42831 -13.18131 -13.07507 -12.86581 -12.84919 -12.80263 -12.64839 -12.45301 -12.09834 -11.98535 -11.73371 -11.23732 -11.12438 -10.92219 -10.26643 -10.23782 -9.83654 -9.10356 -8.67191 -8.34185 -6.12610 -0.10758 -0.06069 1.21894 1.40466 1.44083 1.50384 1.55160 1.69778 2.22248 2.28551 2.64421 2.94760 2.99917 3.04284 3.25342 3.59677 3.66301 3.79922 3.83012 3.88404 4.03529 4.08167 4.21754 4.35558 4.43380 4.49240 4.60432 4.61124 4.75754 4.84525 4.91381 5.01908 5.21882 5.38958 5.41797 5.48989 5.59633 5.91277 6.19609 6.23312 6.28345 7.06908 7.10501 7.13613 8.74787 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.017321 B = 0.002240 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.182201 B =12495.806330 C =13392.262140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.111 3.889 5 C 0.135 3.865 6 N -0.684 5.684 7 C 0.544 3.456 8 N -0.567 5.567 9 C 0.170 3.830 10 C -0.078 4.078 11 F -0.127 7.127 12 C 0.176 3.824 13 N -0.560 5.560 14 C 0.533 3.467 15 O -0.561 6.561 16 C -0.123 4.123 17 S -0.155 6.155 18 C -0.544 4.544 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.261 1.261 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.424 0.576 36 H 0.201 0.799 37 H 0.210 0.790 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 -8.722 25.962 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 N -0.335 5.335 4 C -0.013 4.013 5 C 0.009 3.991 6 N -0.322 5.322 7 C 0.188 3.812 8 N -0.290 5.290 9 C 0.002 3.998 10 C -0.105 4.105 11 F -0.106 7.106 12 C 0.007 3.993 13 N -0.282 5.282 14 C 0.321 3.679 15 O -0.439 6.439 16 C -0.274 4.274 17 S 0.072 5.928 18 C -0.692 4.692 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.186 1.186 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.130 0.870 31 H 0.142 0.858 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.263 0.737 36 H 0.218 0.782 37 H 0.227 0.773 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.920 -6.976 25.231 26.248 hybrid contribution 0.347 -1.226 -0.546 1.386 sum 2.267 -8.202 24.685 26.110 Atomic orbital electron populations 1.22193 0.94860 1.03561 1.02098 1.21931 0.95286 0.80074 1.05107 1.47827 1.65867 1.15729 1.04068 1.21544 0.95108 0.99008 0.85628 1.21509 0.96814 0.97386 0.83383 1.43902 1.08655 1.55789 1.23818 1.19574 0.87601 0.87654 0.86417 1.68053 1.01688 1.23355 1.35883 1.23579 0.93485 0.92703 0.90044 1.19129 0.84200 1.09067 0.98131 1.91519 1.40325 1.95392 1.83372 1.23626 0.85203 0.91419 0.99041 1.68011 1.24521 1.25098 1.10561 1.20163 0.76249 0.85884 0.85581 1.90697 1.46253 1.19519 1.87455 1.23392 1.06016 1.03041 0.94945 1.85601 1.87643 1.22138 0.97435 1.23148 1.51715 1.01763 0.92564 0.89845 1.26135 0.94181 0.97156 1.01722 1.70179 1.44230 1.17928 1.22505 0.85014 0.79347 0.77841 0.75871 1.18563 1.20509 1.18582 0.89272 0.91423 0.94255 0.89999 0.86993 0.85848 0.90914 0.94362 0.90200 0.73669 0.78229 0.77299 0.87462 0.87440 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.24 71.98 0.74 -1.75 16 2 C 0.10 1.58 5.93 86.38 0.51 2.09 16 3 N -0.60 -14.47 2.47 -821.82 -2.03 -16.50 16 4 C 0.11 2.14 5.52 86.38 0.48 2.62 16 5 C 0.13 2.83 5.97 86.38 0.52 3.34 16 6 N -0.68 -13.19 5.71 -350.98 -2.00 -15.19 16 7 C 0.54 12.05 8.43 261.46 2.20 14.25 16 8 N -0.57 -12.87 9.58 -197.78 -1.90 -14.76 16 9 C 0.17 2.97 11.30 84.76 0.96 3.93 16 10 C -0.08 -1.24 7.38 22.53 0.17 -1.07 16 11 F -0.13 -1.98 17.30 44.97 0.78 -1.21 16 12 C 0.18 2.65 11.29 84.75 0.96 3.61 16 13 N -0.56 -11.08 10.46 -197.79 -2.07 -13.15 16 14 C 0.53 19.42 7.69 87.66 0.67 20.09 16 15 O -0.56 -25.73 15.44 -3.05 -0.05 -25.78 16 16 C -0.12 -4.84 4.71 71.23 0.34 -4.50 16 17 S -0.16 -8.64 20.57 -56.49 -1.16 -9.80 16 18 C -0.54 -30.90 9.50 67.95 0.65 -30.26 16 19 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.16 13.22 21.65 0.29 -55.88 16 22 Si 1.00 43.34 29.55 68.60 2.03 45.36 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 26 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.04 0.78 7.22 -2.39 -0.02 0.76 16 29 H 0.08 1.42 6.44 -2.39 -0.02 1.41 16 30 H 0.11 1.12 8.07 -2.39 -0.02 1.10 16 31 H 0.12 1.39 8.07 -2.39 -0.02 1.37 16 32 H 0.07 1.74 7.42 -2.39 -0.02 1.73 16 33 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.42 6.47 8.59 -92.71 -0.80 5.67 16 36 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.11 3.83 7.40 -2.39 -0.02 3.81 16 39 H 0.11 3.85 7.18 -2.40 -0.02 3.83 16 40 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 Total: -1.00 -80.42 364.27 2.81 -77.61 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.28 Total: 15.76 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 8.65 Total: 13.53 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -7.71 Total: -115.48 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.78 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.78 Total: -1.21 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -80.42 2.81 -77.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106694094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.135 kcal (2) G-P(sol) polarization free energy of solvation -80.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds