Wall clock time and date at job start Tue Mar 31 2020 16:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46986 * 2 1 4 4 N 1.46493 * 109.47394 * 239.99378 * 2 1 3 5 5 C 1.34782 * 120.00241 * 85.00227 * 4 2 1 6 6 O 1.21284 * 119.99646 * 359.97438 * 5 4 2 7 7 C 1.50691 * 120.00171 * 180.02562 * 5 4 2 8 8 S 1.80993 * 109.47237 * 179.97438 * 7 5 4 9 9 C 1.76196 * 100.00332 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00211 * 0.02562 * 9 8 7 11 11 C 1.38804 * 120.00460 * 179.97438 * 9 8 7 12 12 N 1.31629 * 119.99631 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00365 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47418 * 90.00222 * 13 11 9 15 15 H 1.48504 * 109.47288 * 210.00218 * 13 11 9 16 16 H 1.48506 * 109.47035 * 330.00220 * 13 11 9 17 17 C 1.53006 * 109.47021 * 119.99190 * 2 1 3 18 18 H 1.08993 * 109.46955 * 185.00420 * 17 2 1 19 19 C 1.52999 * 109.46626 * 64.99947 * 17 2 1 20 20 N 1.46504 * 109.46883 * 305.00485 * 17 2 1 21 21 C 1.38539 * 119.99641 * 204.99773 * 20 17 2 22 22 N 1.32465 * 119.18708 * 359.72459 * 21 20 17 23 23 C 1.32298 * 120.76198 * 179.75721 * 22 21 20 24 24 C 1.38787 * 119.16547 * 0.51174 * 23 22 21 25 25 F 1.35108 * 120.74015 * 179.76996 * 24 23 22 26 26 C 1.38782 * 118.51217 * 359.74805 * 24 23 22 27 27 N 1.32292 * 119.16925 * 359.97438 * 26 24 23 28 28 H 1.09002 * 109.46905 * 60.00758 * 1 2 3 29 29 H 1.09004 * 109.47446 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47518 * 300.00722 * 1 2 3 31 31 H 0.97001 * 120.00216 * 265.00027 * 4 2 1 32 32 H 1.08997 * 109.47235 * 299.99839 * 7 5 4 33 33 H 1.09003 * 109.47390 * 59.99463 * 7 5 4 34 34 H 0.97000 * 120.00209 * 179.97438 * 12 11 9 35 35 H 1.08993 * 109.47839 * 299.99931 * 19 17 2 36 36 H 1.09000 * 109.47160 * 60.00369 * 19 17 2 37 37 H 1.09002 * 109.46719 * 180.02562 * 19 17 2 38 38 H 0.96998 * 120.00034 * 24.99825 * 20 17 2 39 39 H 1.07993 * 120.41586 * 180.23437 * 23 22 21 40 40 H 1.08003 * 120.41358 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1472 -0.0185 -2.3571 6 8 1.8583 1.1582 -2.4118 7 6 2.6490 -0.7291 -3.5875 8 16 2.7094 0.4335 -4.9733 9 6 3.3128 -0.6317 -6.2405 10 1 3.5221 -1.6681 -6.0204 11 6 3.5181 -0.1392 -7.5219 12 7 3.2625 1.1238 -7.7902 13 14 4.1571 -1.2687 -8.8654 14 1 3.0114 -1.9066 -9.5623 15 1 4.9516 -0.4787 -9.8400 16 1 5.0163 -2.3190 -8.2620 17 6 2.0400 -0.7211 1.2494 18 1 3.1262 -0.6441 1.2953 19 6 1.6351 -2.1953 1.1882 20 7 1.4557 -0.1034 2.4424 21 6 2.1087 -0.1959 3.6607 22 7 3.2578 -0.8514 3.7296 23 6 3.9101 -0.9548 4.8759 24 6 3.3707 -0.3755 6.0158 25 9 4.0076 -0.4657 7.2039 26 6 2.1626 0.2990 5.9078 27 7 1.5663 0.3690 4.7290 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 2.2491 -1.6319 -1.1524 32 1 3.6481 -1.1216 -3.3983 33 1 1.9761 -1.5510 -3.8323 34 1 3.4063 1.4682 -8.6856 35 1 0.5489 -2.2723 1.1423 36 1 2.0698 -2.6549 0.3006 37 1 1.9980 -2.7089 2.0785 38 1 0.6116 0.3704 2.3793 39 1 4.8484 -1.4873 4.9248 40 1 1.7148 0.7610 6.7753 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112910661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:21 Heat of formation + Delta-G solvation = -21.597104 kcal Electronic energy + Delta-G solvation = -24366.926766 eV Core-core repulsion = 20451.173255 eV Total energy + Delta-G solvation = -3915.753511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.25133 -41.39160 -39.74071 -37.74928 -34.73166 -34.26929 -32.44643 -32.02603 -30.20542 -29.34083 -28.47169 -25.55673 -25.48719 -24.92252 -23.57819 -21.00977 -20.02733 -19.11471 -18.26216 -17.87484 -17.79872 -16.58886 -16.45227 -16.13009 -15.60373 -15.33122 -14.94978 -14.86192 -14.81394 -14.59061 -14.45697 -13.94642 -13.50723 -13.47145 -13.23047 -12.93570 -12.60013 -12.54627 -12.21334 -12.00947 -11.95688 -11.45316 -11.38841 -11.12545 -11.07709 -11.03980 -10.77786 -10.56802 -9.83663 -9.58424 -9.46700 -9.09529 -9.01826 -8.45500 -8.26067 -6.52130 -6.23392 -3.94097 0.52937 0.53298 2.25530 3.01250 3.03964 3.21200 3.26580 3.28847 3.31227 3.54473 3.59860 3.70692 4.12679 4.18700 4.29040 4.37180 4.46209 4.60754 4.85659 5.05547 5.11061 5.11868 5.14037 5.21358 5.38641 5.46709 5.55248 5.61526 5.75471 5.83695 5.85497 5.91322 6.10813 6.15121 6.21221 6.50730 6.58337 6.92913 7.57841 7.61934 7.76351 8.33495 8.54538 9.22012 10.83998 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.029194 B = 0.001939 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.874582 B =14434.603551 C =14786.088274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.137 3.863 3 H 0.095 0.905 4 N -0.731 5.731 5 C 0.535 3.465 6 O -0.514 6.514 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.150 3.850 18 H 0.100 0.900 19 C -0.167 4.167 20 N -0.683 5.683 21 C 0.561 3.439 22 N -0.541 5.541 23 C 0.176 3.824 24 C -0.079 4.079 25 F -0.128 7.128 26 C 0.176 3.824 27 N -0.548 5.548 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.399 0.601 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.268 0.732 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.417 0.583 39 H 0.179 0.821 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 -6.937 27.589 28.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.031 3.969 3 H 0.113 0.887 4 N -0.388 5.388 5 C 0.321 3.679 6 O -0.388 6.388 7 C -0.304 4.304 8 S 0.167 5.833 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 C 0.045 3.955 18 H 0.118 0.882 19 C -0.225 4.225 20 N -0.321 5.321 21 C 0.205 3.795 22 N -0.263 5.263 23 C 0.006 3.994 24 C -0.107 4.107 25 F -0.107 7.107 26 C 0.006 3.994 27 N -0.269 5.269 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.235 0.765 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.257 0.743 39 H 0.196 0.804 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.460 -4.831 26.282 26.946 hybrid contribution 1.065 -2.426 0.289 2.665 sum -2.396 -7.257 26.571 27.648 Atomic orbital electron populations 1.22271 0.95163 1.02575 1.02707 1.20960 0.94508 0.97790 0.83615 0.88734 1.46068 1.69670 1.13997 1.09065 1.20335 0.76697 0.87213 0.83670 1.90708 1.48037 1.15732 1.84334 1.23532 1.03742 1.04907 0.98254 1.85403 1.86318 1.12851 0.98716 1.22864 1.51022 0.98166 0.96343 0.90903 1.24998 0.95102 0.95547 0.97977 1.70015 1.45535 1.13208 1.21501 0.86163 0.78828 0.79948 0.80529 1.20277 1.20756 1.19686 1.21153 0.99534 0.92399 0.82456 0.88184 1.22271 1.02290 0.95335 1.02654 1.44325 1.25301 1.59011 1.03458 1.19374 0.86144 0.87232 0.86756 1.68026 1.09028 1.21776 1.27453 1.23161 0.98316 0.92324 0.85601 1.19128 0.97483 1.10063 0.83980 1.91519 1.81085 1.95157 1.42990 1.23099 0.89507 0.91469 0.95340 1.67956 1.35787 1.24629 0.98540 0.90924 0.91791 0.92175 0.76549 0.89126 0.89148 0.92172 0.91748 0.91207 0.91710 0.74328 0.80427 0.80467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.00 37.16 0.33 -1.29 16 2 C 0.14 1.46 2.62 -67.93 -0.18 1.28 16 3 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 4 N -0.73 -8.88 4.99 -53.81 -0.27 -9.15 16 5 C 0.53 9.42 7.81 -10.99 -0.09 9.33 16 6 O -0.51 -11.14 15.53 5.55 0.09 -11.05 16 7 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 8 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 9 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 10 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 11 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 12 N -0.87 -25.96 13.22 55.49 0.73 -25.22 16 13 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 C 0.15 1.29 2.61 -67.93 -0.18 1.12 16 18 H 0.10 0.98 7.51 -51.93 -0.39 0.59 16 19 C -0.17 -1.22 9.01 37.16 0.33 -0.89 16 20 N -0.68 -5.85 5.14 -55.77 -0.29 -6.14 16 21 C 0.56 5.43 8.41 -322.70 -2.71 2.72 16 22 N -0.54 -5.04 9.20 -13.86 -0.13 -5.17 16 23 C 0.18 1.30 11.29 -17.15 -0.19 1.10 16 24 C -0.08 -0.58 7.38 -39.18 -0.29 -0.87 16 25 F -0.13 -0.97 17.30 2.25 0.04 -0.93 16 26 C 0.18 1.27 11.29 -17.15 -0.19 1.08 16 27 N -0.55 -5.08 10.46 -13.86 -0.14 -5.23 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 30 H 0.06 0.46 6.29 -51.93 -0.33 0.13 16 31 H 0.40 3.75 6.58 -40.82 -0.27 3.49 16 32 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 33 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 36 H 0.07 0.45 6.29 -51.93 -0.33 0.12 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.42 3.21 6.69 -40.82 -0.27 2.94 16 39 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.18 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -34.65 356.71 -9.31 -43.96 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.74 Total: 3.13 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.74 Total: -1.97 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.09 Total: -50.91 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.04 Total: -0.93 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.65 -9.31 -43.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112910661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.359 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds