Wall clock time and date at job start Tue Mar 31 2020 16:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46986 * 2 1 4 4 N 1.46493 * 109.47394 * 239.99378 * 2 1 3 5 5 C 1.34782 * 120.00241 * 85.00227 * 4 2 1 6 6 O 1.21284 * 119.99646 * 359.97438 * 5 4 2 7 7 C 1.50691 * 120.00171 * 180.02562 * 5 4 2 8 8 S 1.80993 * 109.47237 * 179.97438 * 7 5 4 9 9 C 1.76196 * 100.00332 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00211 * 0.02562 * 9 8 7 11 11 C 1.38804 * 120.00460 * 179.97438 * 9 8 7 12 12 N 1.31629 * 119.99631 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00365 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47418 * 90.00222 * 13 11 9 15 15 H 1.48504 * 109.47288 * 210.00218 * 13 11 9 16 16 H 1.48506 * 109.47035 * 330.00220 * 13 11 9 17 17 C 1.53006 * 109.47021 * 119.99190 * 2 1 3 18 18 H 1.08993 * 109.46955 * 185.00420 * 17 2 1 19 19 C 1.52999 * 109.46626 * 64.99947 * 17 2 1 20 20 N 1.46504 * 109.46883 * 305.00485 * 17 2 1 21 21 C 1.38539 * 119.99641 * 204.99773 * 20 17 2 22 22 N 1.32465 * 119.18708 * 359.72459 * 21 20 17 23 23 C 1.32298 * 120.76198 * 179.75721 * 22 21 20 24 24 C 1.38787 * 119.16547 * 0.51174 * 23 22 21 25 25 F 1.35108 * 120.74015 * 179.76996 * 24 23 22 26 26 C 1.38782 * 118.51217 * 359.74805 * 24 23 22 27 27 N 1.32292 * 119.16925 * 359.97438 * 26 24 23 28 28 H 1.09002 * 109.46905 * 60.00758 * 1 2 3 29 29 H 1.09004 * 109.47446 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47518 * 300.00722 * 1 2 3 31 31 H 0.97001 * 120.00216 * 265.00027 * 4 2 1 32 32 H 1.08997 * 109.47235 * 299.99839 * 7 5 4 33 33 H 1.09003 * 109.47390 * 59.99463 * 7 5 4 34 34 H 0.97000 * 120.00209 * 179.97438 * 12 11 9 35 35 H 1.08993 * 109.47839 * 299.99931 * 19 17 2 36 36 H 1.09000 * 109.47160 * 60.00369 * 19 17 2 37 37 H 1.09002 * 109.46719 * 180.02562 * 19 17 2 38 38 H 0.96998 * 120.00034 * 24.99825 * 20 17 2 39 39 H 1.07993 * 120.41586 * 180.23437 * 23 22 21 40 40 H 1.08003 * 120.41358 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1472 -0.0185 -2.3571 6 8 1.8583 1.1582 -2.4118 7 6 2.6490 -0.7291 -3.5875 8 16 2.7094 0.4335 -4.9733 9 6 3.3128 -0.6317 -6.2405 10 1 3.5221 -1.6681 -6.0204 11 6 3.5181 -0.1392 -7.5219 12 7 3.2625 1.1238 -7.7902 13 14 4.1571 -1.2687 -8.8654 14 1 3.0114 -1.9066 -9.5623 15 1 4.9516 -0.4787 -9.8400 16 1 5.0163 -2.3190 -8.2620 17 6 2.0400 -0.7211 1.2494 18 1 3.1262 -0.6441 1.2953 19 6 1.6351 -2.1953 1.1882 20 7 1.4557 -0.1034 2.4424 21 6 2.1087 -0.1959 3.6607 22 7 3.2578 -0.8514 3.7296 23 6 3.9101 -0.9548 4.8759 24 6 3.3707 -0.3755 6.0158 25 9 4.0076 -0.4657 7.2039 26 6 2.1626 0.2990 5.9078 27 7 1.5663 0.3690 4.7290 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 2.2491 -1.6319 -1.1524 32 1 3.6481 -1.1216 -3.3983 33 1 1.9761 -1.5510 -3.8323 34 1 3.4063 1.4682 -8.6856 35 1 0.5489 -2.2723 1.1423 36 1 2.0698 -2.6549 0.3006 37 1 1.9980 -2.7089 2.0785 38 1 0.6116 0.3704 2.3793 39 1 4.8484 -1.4873 4.9248 40 1 1.7148 0.7610 6.7753 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112910661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:18 Heat of formation + Delta-G solvation = -44.508029 kcal Electronic energy + Delta-G solvation = -24367.920258 eV Core-core repulsion = 20451.173255 eV Total energy + Delta-G solvation = -3916.747003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -49.83199 -42.01867 -40.93881 -38.74040 -35.70752 -34.88056 -34.57390 -33.03350 -31.19277 -29.98630 -29.70615 -27.64960 -26.13514 -25.66032 -24.29382 -22.13813 -21.03179 -19.98951 -19.63633 -18.85792 -18.38838 -17.97585 -17.26138 -16.99631 -16.86910 -16.55479 -16.11875 -16.06562 -15.92495 -15.49992 -15.24260 -15.06970 -14.76489 -14.45829 -14.19751 -14.05975 -13.78144 -13.37522 -13.24219 -13.15298 -12.91000 -12.88434 -12.72305 -12.57927 -12.19327 -12.07939 -11.91637 -11.71413 -11.23021 -11.13379 -10.96119 -10.25929 -10.21948 -10.17400 -9.08908 -8.65205 -8.33813 -6.11394 -0.07509 -0.03848 1.25138 1.43099 1.44140 1.54325 1.60706 1.70698 2.27589 2.34633 2.67158 2.97777 3.00440 3.06548 3.32752 3.47844 3.60697 3.80450 3.83718 3.89735 3.96734 4.10334 4.32183 4.37116 4.46684 4.53573 4.62870 4.67928 4.77556 4.92210 4.93172 5.14298 5.26670 5.40646 5.42928 5.43646 5.59500 5.93550 6.20871 6.29078 6.47978 7.07725 7.13339 7.23873 8.75258 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.029194 B = 0.001939 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.874582 B =14434.603551 C =14786.088274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.069 0.931 4 N -0.705 5.705 5 C 0.538 3.462 6 O -0.562 6.562 7 C -0.130 4.130 8 S -0.152 6.152 9 C -0.545 4.545 10 H 0.084 0.916 11 C 0.012 3.988 12 N -0.911 5.911 13 Si 0.998 3.002 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.257 1.257 17 C 0.164 3.836 18 H 0.090 0.910 19 C -0.162 4.162 20 N -0.682 5.682 21 C 0.548 3.452 22 N -0.557 5.557 23 C 0.173 3.827 24 C -0.079 4.079 25 F -0.129 7.129 26 C 0.174 3.826 27 N -0.564 5.564 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.416 0.584 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.271 0.729 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.419 0.581 39 H 0.204 0.796 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 -9.460 28.932 30.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.034 3.966 3 H 0.088 0.912 4 N -0.361 5.361 5 C 0.324 3.676 6 O -0.439 6.439 7 C -0.281 4.281 8 S 0.076 5.924 9 C -0.693 4.693 10 H 0.102 0.898 11 C -0.193 4.193 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.181 1.181 17 C 0.058 3.942 18 H 0.108 0.892 19 C -0.220 4.220 20 N -0.321 5.321 21 C 0.191 3.809 22 N -0.279 5.279 23 C 0.004 3.996 24 C -0.107 4.107 25 F -0.108 7.108 26 C 0.005 3.995 27 N -0.286 5.286 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.255 0.745 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.260 0.740 39 H 0.220 0.780 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.127 -7.403 27.689 28.831 hybrid contribution 0.960 -1.649 0.081 1.910 sum -2.167 -9.052 27.770 29.288 Atomic orbital electron populations 1.22219 0.94000 1.03618 1.02335 1.21003 0.95308 0.96659 0.83613 0.91238 1.45769 1.67840 1.14592 1.07905 1.20045 0.76522 0.86534 0.84533 1.90701 1.50419 1.17714 1.85107 1.23376 1.05673 1.03240 0.95856 1.85588 1.86705 1.17350 1.02805 1.23209 1.50786 0.98509 0.96774 0.89809 1.26131 0.95154 0.97190 1.00798 1.70184 1.46933 1.15475 1.22203 0.84956 0.78418 0.77768 0.76858 1.19335 1.20452 1.18129 1.20938 0.98818 0.92991 0.81415 0.89159 1.22241 1.02813 0.93907 1.03070 1.44260 1.25362 1.59244 1.03218 1.19559 0.86541 0.87707 0.87094 1.68061 1.09178 1.22361 1.28316 1.23604 0.98919 0.91973 0.85114 1.19164 0.97543 1.10002 0.83957 1.91521 1.81098 1.95157 1.43001 1.23571 0.89436 0.90937 0.95540 1.67996 1.36371 1.25187 0.99051 0.93852 0.89974 0.90058 0.74474 0.87101 0.86975 0.92050 0.91020 0.90055 0.91970 0.73992 0.77959 0.77788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.00 71.98 0.65 -2.31 16 2 C 0.14 2.84 2.62 44.99 0.12 2.96 16 3 H 0.07 1.82 7.58 -2.39 -0.02 1.81 16 4 N -0.70 -16.09 4.99 -442.54 -2.21 -18.30 16 5 C 0.54 18.77 7.81 87.65 0.68 19.46 16 6 O -0.56 -25.05 15.53 -3.04 -0.05 -25.10 16 7 C -0.13 -4.94 6.16 71.23 0.44 -4.50 16 8 S -0.15 -8.28 20.57 -56.49 -1.16 -9.45 16 9 C -0.54 -30.69 9.50 67.96 0.65 -30.05 16 10 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 11 C 0.01 0.68 5.49 84.86 0.47 1.14 16 12 N -0.91 -55.73 13.22 21.65 0.29 -55.44 16 13 Si 1.00 43.21 29.55 68.60 2.03 45.23 16 14 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 15 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 17 C 0.16 2.58 2.61 44.99 0.12 2.70 16 18 H 0.09 1.65 7.51 -2.39 -0.02 1.63 16 19 C -0.16 -1.96 9.01 71.98 0.65 -1.31 16 20 N -0.68 -10.86 5.14 -330.36 -1.70 -12.56 16 21 C 0.55 9.95 8.41 261.45 2.20 12.15 16 22 N -0.56 -9.62 9.20 -197.77 -1.82 -11.44 16 23 C 0.17 2.27 11.29 84.75 0.96 3.22 16 24 C -0.08 -1.03 7.38 22.53 0.17 -0.86 16 25 F -0.13 -1.71 17.30 44.97 0.78 -0.93 16 26 C 0.17 2.24 11.29 84.75 0.96 3.19 16 27 N -0.56 -9.76 10.46 -197.77 -2.07 -11.83 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 1.19 6.56 -2.38 -0.02 1.18 16 30 H 0.08 1.12 6.29 -2.39 -0.02 1.11 16 31 H 0.42 6.69 6.58 -92.71 -0.61 6.08 16 32 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 33 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 34 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.07 0.79 6.56 -2.39 -0.02 0.77 16 36 H 0.08 0.78 6.29 -2.39 -0.02 0.77 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.42 5.95 6.69 -92.71 -0.62 5.33 16 39 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -77.71 356.71 2.01 -75.70 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -0.12 Total: 18.32 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 8.05 Total: 5.79 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -7.51 Total: -109.58 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.05 Total: -25.10 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.78 Total: -0.93 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.45 kcal Total: -77.71 2.01 -75.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112910661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.196 kcal (2) G-P(sol) polarization free energy of solvation -77.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds