Wall clock time and date at job start Tue Mar 31 2020 16:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.34768 * 120.00056 * 275.00296 * 4 2 1 6 6 O 1.21278 * 120.00079 * 359.97438 * 5 4 2 7 7 C 1.50705 * 120.00177 * 179.97438 * 5 4 2 8 8 S 1.81002 * 109.47331 * 179.97438 * 7 5 4 9 9 C 1.76197 * 99.99778 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00579 * 0.02562 * 9 8 7 11 11 C 1.38806 * 119.99871 * 179.97438 * 9 8 7 12 12 N 1.31633 * 119.99555 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99966 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47283 * 60.00188 * 13 11 9 15 15 H 1.48505 * 109.47110 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47037 * 299.99888 * 13 11 9 17 17 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 18 18 H 1.09000 * 109.46904 * 175.00284 * 17 2 1 19 19 C 1.52999 * 109.46811 * 294.99812 * 17 2 1 20 20 N 1.46496 * 109.47070 * 54.99706 * 17 2 1 21 21 C 1.38541 * 119.99914 * 155.00204 * 20 17 2 22 22 N 1.32461 * 119.18552 * 359.72702 * 21 20 17 23 23 C 1.32305 * 120.76141 * 179.76046 * 22 21 20 24 24 C 1.38779 * 119.16669 * 0.50782 * 23 22 21 25 25 F 1.35100 * 120.74439 * 179.77328 * 24 23 22 26 26 C 1.38786 * 118.51060 * 359.74669 * 24 23 22 27 27 N 1.32292 * 119.17020 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 32 32 H 1.08996 * 109.47135 * 300.00342 * 7 5 4 33 33 H 1.09000 * 109.46519 * 60.00292 * 7 5 4 34 34 H 0.97000 * 119.99541 * 179.97438 * 12 11 9 35 35 H 1.09001 * 109.47273 * 300.00152 * 19 17 2 36 36 H 1.08998 * 109.47609 * 60.00099 * 19 17 2 37 37 H 1.09002 * 109.46911 * 180.02562 * 19 17 2 38 38 H 0.97001 * 120.00360 * 335.00117 * 20 17 2 39 39 H 1.07997 * 120.41065 * 180.23681 * 23 22 21 40 40 H 1.08000 * 120.41387 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8590 1.1585 2.4115 7 6 2.6490 -0.7289 3.5877 8 16 2.7107 0.4343 4.9731 9 6 3.3139 -0.6310 6.2403 10 1 3.5232 -1.6675 6.0203 11 6 3.5210 -0.1379 7.5212 12 7 3.2663 1.1254 7.7891 13 14 4.1611 -1.2671 8.8644 14 1 5.4873 -1.8053 8.4684 15 1 4.2944 -0.5035 10.1311 16 1 3.2099 -2.3903 9.0619 17 6 2.0400 -0.7212 -1.2494 18 1 3.1263 -0.6443 -1.2952 19 6 1.6352 -2.1954 -1.1881 20 7 1.4558 -0.1035 -2.4424 21 6 2.1089 -0.1961 -3.6607 22 7 3.2633 -0.8422 -3.7273 23 6 3.9112 -0.9536 -4.8754 24 6 3.3719 -0.3742 -6.0153 25 9 4.0087 -0.4645 -7.2034 26 6 2.1633 0.2994 -5.9076 27 7 1.5665 0.3687 -4.7290 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 2.2491 -1.6318 1.1525 32 1 1.9762 -1.5508 3.8325 33 1 3.6481 -1.1213 3.3984 34 1 3.4107 1.4699 8.6843 35 1 2.0699 -2.6549 -0.3004 36 1 0.5490 -2.2724 -1.1422 37 1 1.9990 -2.7093 -2.0779 38 1 0.6117 0.3703 -2.3794 39 1 4.8502 -1.4849 -4.9240 40 1 1.7160 0.7620 -6.7750 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112910662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:24 Heat of formation + Delta-G solvation = -21.524130 kcal Electronic energy + Delta-G solvation = -24366.866345 eV Core-core repulsion = 20451.115999 eV Total energy + Delta-G solvation = -3915.750346 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.25330 -41.39173 -39.74146 -37.74956 -34.73174 -34.26890 -32.44405 -32.02674 -30.20551 -29.34079 -28.47075 -25.55659 -25.48598 -24.92138 -23.57827 -21.00971 -20.02748 -19.11473 -18.26103 -17.87323 -17.79892 -16.58853 -16.45296 -16.13090 -15.60388 -15.32961 -14.95089 -14.86209 -14.81173 -14.58999 -14.45722 -13.94401 -13.50687 -13.47241 -13.22982 -12.93554 -12.59766 -12.54633 -12.21486 -12.00990 -11.95681 -11.45176 -11.38854 -11.12634 -11.05943 -11.04973 -10.78347 -10.56885 -9.84395 -9.58424 -9.46617 -9.08784 -9.01662 -8.45463 -8.26400 -6.52022 -6.23069 -3.93903 0.52918 0.53291 2.25547 3.01333 3.04041 3.22503 3.26417 3.28454 3.30637 3.54485 3.59877 3.70673 4.12701 4.19005 4.29021 4.37156 4.46213 4.60766 4.85648 5.05563 5.11047 5.12010 5.14043 5.21306 5.38558 5.46708 5.55208 5.61583 5.75394 5.83677 5.85578 5.91315 6.10854 6.15085 6.21229 6.50722 6.58343 6.92896 7.57698 7.61992 7.76356 8.33480 8.54600 9.22152 10.84259 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.001940 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.649554 B =14432.427083 C =14784.205843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.137 3.863 3 H 0.095 0.905 4 N -0.731 5.731 5 C 0.535 3.465 6 O -0.514 6.514 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.150 3.850 18 H 0.100 0.900 19 C -0.167 4.167 20 N -0.683 5.683 21 C 0.561 3.439 22 N -0.541 5.541 23 C 0.176 3.824 24 C -0.079 4.079 25 F -0.128 7.128 26 C 0.176 3.824 27 N -0.548 5.548 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.399 0.601 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.269 0.731 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.417 0.583 39 H 0.179 0.821 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.594 -6.949 -27.583 28.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.031 3.969 3 H 0.113 0.887 4 N -0.388 5.388 5 C 0.321 3.679 6 O -0.388 6.388 7 C -0.304 4.304 8 S 0.167 5.833 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C 0.044 3.956 18 H 0.118 0.882 19 C -0.226 4.226 20 N -0.321 5.321 21 C 0.205 3.795 22 N -0.263 5.263 23 C 0.006 3.994 24 C -0.106 4.106 25 F -0.107 7.107 26 C 0.006 3.994 27 N -0.269 5.269 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.234 0.766 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.257 0.743 39 H 0.196 0.804 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.472 -4.829 -26.270 26.935 hybrid contribution 1.071 -2.438 -0.296 2.680 sum -2.402 -7.268 -26.567 27.647 Atomic orbital electron populations 1.22273 0.95162 1.02574 1.02707 1.20961 0.94508 0.97792 0.83613 0.88733 1.46066 1.69667 1.14000 1.09063 1.20334 0.76694 0.87216 0.83673 1.90707 1.48053 1.15718 1.84336 1.23536 1.03734 1.04911 0.98256 1.85402 1.86324 1.12793 0.98736 1.22825 1.51120 0.98131 0.96392 0.90953 1.24997 0.95088 0.95550 0.97964 1.70008 1.45426 1.13202 1.21629 0.86220 0.79319 0.80001 0.79936 1.19926 1.20818 1.19942 1.21154 0.99550 0.92393 0.82458 0.88168 1.22272 1.02292 0.95335 1.02652 1.44324 1.25310 1.59012 1.03449 1.19373 0.86092 0.87285 0.86756 1.68026 1.08935 1.21919 1.27404 1.23161 0.98388 0.92288 0.85570 1.19124 0.97479 1.10043 0.83999 1.91516 1.81079 1.95152 1.42999 1.23100 0.89476 0.91506 0.95334 1.67956 1.35882 1.24516 0.98556 0.90923 0.91790 0.92173 0.76550 0.89148 0.89132 0.92117 0.91209 0.91738 0.91725 0.74328 0.80426 0.80467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.00 37.16 0.33 -1.29 16 2 C 0.14 1.46 2.62 -67.93 -0.18 1.28 16 3 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 4 N -0.73 -8.88 4.99 -53.81 -0.27 -9.15 16 5 C 0.53 9.42 7.81 -10.99 -0.09 9.33 16 6 O -0.51 -11.14 15.52 5.56 0.09 -11.06 16 7 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 8 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 9 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 10 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 12 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 13 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 17 C 0.15 1.29 2.61 -67.93 -0.18 1.12 16 18 H 0.10 0.98 7.50 -51.93 -0.39 0.59 16 19 C -0.17 -1.22 9.01 37.16 0.33 -0.89 16 20 N -0.68 -5.85 5.14 -55.77 -0.29 -6.14 16 21 C 0.56 5.43 8.41 -322.70 -2.71 2.72 16 22 N -0.54 -5.05 9.20 -13.86 -0.13 -5.18 16 23 C 0.18 1.30 11.29 -17.15 -0.19 1.10 16 24 C -0.08 -0.58 7.38 -39.18 -0.29 -0.87 16 25 F -0.13 -0.97 17.30 2.25 0.04 -0.93 16 26 C 0.18 1.27 11.29 -17.15 -0.19 1.08 16 27 N -0.55 -5.08 10.46 -13.86 -0.14 -5.23 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 30 H 0.06 0.46 6.29 -51.93 -0.33 0.13 16 31 H 0.40 3.75 6.58 -40.82 -0.27 3.49 16 32 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 33 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.07 0.45 6.29 -51.93 -0.33 0.12 16 36 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.42 3.21 6.69 -40.82 -0.27 2.94 16 39 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -34.63 356.70 -9.31 -43.94 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.74 Total: 3.17 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.74 Total: -1.98 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.09 Total: -50.92 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.04 Total: -0.93 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.63 -9.31 -43.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112910662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.415 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds