Wall clock time and date at job start Tue Mar 31 2020 16:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.34768 * 120.00056 * 275.00296 * 4 2 1 6 6 O 1.21278 * 120.00079 * 359.97438 * 5 4 2 7 7 C 1.50705 * 120.00177 * 179.97438 * 5 4 2 8 8 S 1.81002 * 109.47331 * 179.97438 * 7 5 4 9 9 C 1.76197 * 99.99778 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00579 * 0.02562 * 9 8 7 11 11 C 1.38806 * 119.99871 * 179.97438 * 9 8 7 12 12 N 1.31633 * 119.99555 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99966 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47283 * 60.00188 * 13 11 9 15 15 H 1.48505 * 109.47110 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47037 * 299.99888 * 13 11 9 17 17 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 18 18 H 1.09000 * 109.46904 * 175.00284 * 17 2 1 19 19 C 1.52999 * 109.46811 * 294.99812 * 17 2 1 20 20 N 1.46496 * 109.47070 * 54.99706 * 17 2 1 21 21 C 1.38541 * 119.99914 * 155.00204 * 20 17 2 22 22 N 1.32461 * 119.18552 * 359.72702 * 21 20 17 23 23 C 1.32305 * 120.76141 * 179.76046 * 22 21 20 24 24 C 1.38779 * 119.16669 * 0.50782 * 23 22 21 25 25 F 1.35100 * 120.74439 * 179.77328 * 24 23 22 26 26 C 1.38786 * 118.51060 * 359.74669 * 24 23 22 27 27 N 1.32292 * 119.17020 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 32 32 H 1.08996 * 109.47135 * 300.00342 * 7 5 4 33 33 H 1.09000 * 109.46519 * 60.00292 * 7 5 4 34 34 H 0.97000 * 119.99541 * 179.97438 * 12 11 9 35 35 H 1.09001 * 109.47273 * 300.00152 * 19 17 2 36 36 H 1.08998 * 109.47609 * 60.00099 * 19 17 2 37 37 H 1.09002 * 109.46911 * 180.02562 * 19 17 2 38 38 H 0.97001 * 120.00360 * 335.00117 * 20 17 2 39 39 H 1.07997 * 120.41065 * 180.23681 * 23 22 21 40 40 H 1.08000 * 120.41387 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8590 1.1585 2.4115 7 6 2.6490 -0.7289 3.5877 8 16 2.7107 0.4343 4.9731 9 6 3.3139 -0.6310 6.2403 10 1 3.5232 -1.6675 6.0203 11 6 3.5210 -0.1379 7.5212 12 7 3.2663 1.1254 7.7891 13 14 4.1611 -1.2671 8.8644 14 1 5.4873 -1.8053 8.4684 15 1 4.2944 -0.5035 10.1311 16 1 3.2099 -2.3903 9.0619 17 6 2.0400 -0.7212 -1.2494 18 1 3.1263 -0.6443 -1.2952 19 6 1.6352 -2.1954 -1.1881 20 7 1.4558 -0.1035 -2.4424 21 6 2.1089 -0.1961 -3.6607 22 7 3.2633 -0.8422 -3.7273 23 6 3.9112 -0.9536 -4.8754 24 6 3.3719 -0.3742 -6.0153 25 9 4.0087 -0.4645 -7.2034 26 6 2.1633 0.2994 -5.9076 27 7 1.5665 0.3687 -4.7290 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 2.2491 -1.6318 1.1525 32 1 1.9762 -1.5508 3.8325 33 1 3.6481 -1.1213 3.3984 34 1 3.4107 1.4699 8.6843 35 1 2.0699 -2.6549 -0.3004 36 1 0.5490 -2.2724 -1.1422 37 1 1.9990 -2.7093 -2.0779 38 1 0.6117 0.3703 -2.3794 39 1 4.8502 -1.4849 -4.9240 40 1 1.7160 0.7620 -6.7750 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112910662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:24 Heat of formation + Delta-G solvation = -44.423796 kcal Electronic energy + Delta-G solvation = -24367.859349 eV Core-core repulsion = 20451.115999 eV Total energy + Delta-G solvation = -3916.743351 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.83406 -42.01905 -40.94004 -38.74074 -35.70797 -34.88045 -34.57148 -33.03414 -31.19290 -29.98611 -29.70583 -27.64608 -26.13697 -25.65920 -24.29412 -22.13825 -21.03213 -19.98815 -19.63549 -18.85701 -18.38877 -17.97560 -17.26145 -16.99772 -16.86603 -16.55525 -16.11850 -16.06651 -15.92377 -15.49894 -15.24254 -15.07003 -14.76465 -14.45502 -14.19759 -14.06001 -13.78164 -13.37439 -13.24340 -13.15652 -12.90953 -12.85564 -12.72635 -12.59519 -12.19226 -12.07894 -11.91911 -11.72841 -11.23087 -11.11748 -10.96084 -10.26260 -10.22011 -10.17414 -9.08890 -8.65150 -8.33481 -6.11225 -0.07532 -0.03893 1.25124 1.44124 1.44743 1.53464 1.60626 1.70681 2.27953 2.34630 2.67117 2.97774 3.00628 3.06540 3.32855 3.47838 3.60688 3.80415 3.83731 3.89721 3.96727 4.10314 4.32235 4.37123 4.46657 4.53574 4.62839 4.67870 4.77494 4.92192 4.93179 5.14222 5.26677 5.40571 5.42795 5.43555 5.59494 5.93564 6.20800 6.29047 6.48009 7.07861 7.13328 7.23891 8.75326 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.001940 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.649554 B =14432.427083 C =14784.205843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.069 0.931 4 N -0.705 5.705 5 C 0.538 3.462 6 O -0.562 6.562 7 C -0.130 4.130 8 S -0.151 6.151 9 C -0.546 4.546 10 H 0.084 0.916 11 C 0.012 3.988 12 N -0.911 5.911 13 Si 0.998 3.002 14 H -0.262 1.262 15 H -0.280 1.280 16 H -0.262 1.262 17 C 0.164 3.836 18 H 0.090 0.910 19 C -0.162 4.162 20 N -0.682 5.682 21 C 0.548 3.452 22 N -0.557 5.557 23 C 0.173 3.827 24 C -0.079 4.079 25 F -0.129 7.129 26 C 0.174 3.826 27 N -0.564 5.564 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.416 0.584 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.271 0.729 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.419 0.581 39 H 0.204 0.796 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 -9.481 -28.924 30.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.034 3.966 3 H 0.088 0.912 4 N -0.361 5.361 5 C 0.324 3.676 6 O -0.439 6.439 7 C -0.281 4.281 8 S 0.076 5.924 9 C -0.694 4.694 10 H 0.102 0.898 11 C -0.193 4.193 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.187 1.187 15 H -0.205 1.205 16 H -0.186 1.186 17 C 0.058 3.942 18 H 0.108 0.892 19 C -0.220 4.220 20 N -0.321 5.321 21 C 0.191 3.809 22 N -0.279 5.279 23 C 0.004 3.996 24 C -0.107 4.107 25 F -0.108 7.108 26 C 0.005 3.995 27 N -0.286 5.286 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.255 0.745 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.260 0.740 39 H 0.220 0.780 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.140 -7.410 -27.675 28.822 hybrid contribution 0.967 -1.659 -0.091 1.923 sum -2.173 -9.070 -27.766 29.291 Atomic orbital electron populations 1.22221 0.93995 1.03621 1.02336 1.21003 0.95310 0.96658 0.83612 0.91246 1.45767 1.67836 1.14595 1.07903 1.20043 0.76521 0.86537 0.84536 1.90700 1.50436 1.17701 1.85108 1.23380 1.05668 1.03238 0.95858 1.85588 1.86715 1.17303 1.02832 1.23180 1.50874 0.98508 0.96820 0.89803 1.26133 0.95135 0.97193 1.00793 1.70181 1.46846 1.15471 1.22283 0.85010 0.79102 0.77755 0.76176 1.18651 1.20548 1.18620 1.20938 0.98830 0.92991 0.81415 0.89152 1.22243 1.02819 0.93900 1.03073 1.44259 1.25371 1.59245 1.03209 1.19557 0.86486 0.87759 0.87095 1.68061 1.09081 1.22517 1.28271 1.23604 0.98994 0.91932 0.85082 1.19160 0.97539 1.09982 0.83976 1.91519 1.81093 1.95153 1.43009 1.23572 0.89404 0.90973 0.95534 1.67996 1.36469 1.25069 0.99067 0.93853 0.89968 0.90056 0.74474 0.86980 0.87099 0.92048 0.90057 0.91006 0.91975 0.73992 0.77960 0.77786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.00 71.98 0.65 -2.31 16 2 C 0.14 2.84 2.62 44.99 0.12 2.96 16 3 H 0.07 1.82 7.58 -2.39 -0.02 1.81 16 4 N -0.70 -16.10 4.99 -442.54 -2.21 -18.31 16 5 C 0.54 18.78 7.81 87.66 0.68 19.47 16 6 O -0.56 -25.07 15.52 -3.02 -0.05 -25.11 16 7 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 8 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 9 C -0.55 -30.76 9.50 67.96 0.65 -30.11 16 10 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 11 C 0.01 0.69 5.49 84.86 0.47 1.15 16 12 N -0.91 -55.74 13.22 21.65 0.29 -55.46 16 13 Si 1.00 43.17 29.55 68.60 2.03 45.19 16 14 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 17 C 0.16 2.58 2.61 44.99 0.12 2.70 16 18 H 0.09 1.65 7.50 -2.39 -0.02 1.63 16 19 C -0.16 -1.96 9.01 71.98 0.65 -1.31 16 20 N -0.68 -10.87 5.14 -330.37 -1.70 -12.57 16 21 C 0.55 9.96 8.41 261.45 2.20 12.15 16 22 N -0.56 -9.64 9.20 -197.77 -1.82 -11.46 16 23 C 0.17 2.27 11.29 84.75 0.96 3.22 16 24 C -0.08 -1.03 7.38 22.53 0.17 -0.86 16 25 F -0.13 -1.71 17.30 44.97 0.78 -0.93 16 26 C 0.17 2.24 11.29 84.75 0.96 3.19 16 27 N -0.56 -9.77 10.46 -197.77 -2.07 -11.83 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 1.19 6.56 -2.39 -0.02 1.18 16 30 H 0.08 1.13 6.29 -2.38 -0.02 1.11 16 31 H 0.42 6.69 6.58 -92.71 -0.61 6.08 16 32 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 33 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 34 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.08 0.78 6.29 -2.39 -0.02 0.77 16 36 H 0.07 0.79 6.56 -2.39 -0.02 0.77 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.42 5.95 6.69 -92.71 -0.62 5.33 16 39 H 0.20 1.41 8.06 -2.91 -0.02 1.38 16 40 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -77.71 356.70 2.01 -75.70 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.12 Total: 18.45 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 8.05 Total: 5.76 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -7.51 Total: -109.62 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.05 Total: -25.11 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.78 Total: -0.93 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -77.71 2.01 -75.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112910662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.275 kcal (2) G-P(sol) polarization free energy of solvation -77.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds