Wall clock time and date at job start Tue Mar 31 2020 16:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 119.99836 * 2 1 3 5 5 C 1.38570 * 120.00194 * 275.00031 * 4 2 1 6 6 C 1.39465 * 120.51555 * 359.72624 * 5 4 2 7 7 C 1.38467 * 118.30895 * 179.80141 * 6 5 4 8 8 F 1.35103 * 120.43010 * 180.21767 * 7 6 5 9 9 N 1.32790 * 119.14297 * 0.47148 * 7 6 5 10 10 C 1.31764 * 120.95981 * 359.74687 * 9 7 6 11 11 N 1.31756 * 121.86102 * 0.02562 * 10 9 7 12 12 C 1.52995 * 109.47187 * 240.00502 * 2 1 3 13 13 H 1.09002 * 109.46830 * 299.99492 * 12 2 1 14 14 C 1.53000 * 109.47187 * 180.02562 * 12 2 1 15 15 N 1.46496 * 109.47630 * 59.99640 * 12 2 1 16 16 C 1.34777 * 120.00258 * 205.00405 * 15 12 2 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 12 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 12 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00457 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47357 * 89.99660 * 24 22 20 26 26 H 1.48495 * 109.47496 * 209.99879 * 24 22 20 27 27 H 1.48500 * 109.46916 * 330.00121 * 24 22 20 28 28 H 1.08998 * 109.47335 * 299.99191 * 1 2 3 29 29 H 1.09002 * 109.47254 * 60.00358 * 1 2 3 30 30 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99694 * 95.00601 * 4 2 1 32 32 H 1.08000 * 120.83865 * 359.97438 * 6 5 4 33 33 H 1.07994 * 119.06853 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.46821 * 299.99498 * 14 12 2 35 35 H 1.08992 * 109.47302 * 59.99702 * 14 12 2 36 36 H 1.09006 * 109.47229 * 180.02562 * 14 12 2 37 37 H 0.96999 * 119.99694 * 24.99795 * 15 12 2 38 38 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 39 39 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 40 40 H 0.97002 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1507 0.0007 2.3898 6 6 1.8275 1.3554 2.4632 7 6 1.9730 2.0002 3.6799 8 9 1.6682 3.3109 3.8005 9 7 2.4209 1.3150 4.7254 10 6 2.7213 0.0364 4.6197 11 7 2.5933 -0.6163 3.4823 12 6 2.0400 -0.7211 -1.2493 13 1 1.6767 -1.7488 -1.2493 14 6 3.5700 -0.7217 -1.2489 15 7 1.5517 -0.0306 -2.4454 16 6 1.4229 -0.7029 -3.6064 17 8 1.7118 -1.8795 -3.6610 18 6 0.9200 0.0075 -4.8367 19 16 0.8600 -1.1553 -6.2225 20 6 0.2553 -0.0905 -7.4894 21 1 0.0445 0.9455 -7.2690 22 6 0.0488 -0.5835 -8.7704 23 7 -0.4024 0.2121 -9.7169 24 14 0.4114 -2.3760 -9.1511 25 1 -0.8072 -3.1896 -8.9097 26 1 0.8207 -2.5072 -10.5725 27 1 1.5089 -2.8562 -8.2736 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2491 -1.6317 1.1525 32 1 1.4701 1.8872 1.5938 33 1 3.0827 -0.4914 5.4898 34 1 3.9337 0.3059 -1.2487 35 1 3.9330 -1.2358 -0.3590 36 1 3.9334 -1.2351 -2.1392 37 1 1.3209 0.9106 -2.4018 38 1 -0.0794 0.3991 -4.6471 39 1 1.5922 0.8298 -5.0817 40 1 -0.5464 -0.1322 -10.6123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112911223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:16 Heat of formation + Delta-G solvation = -27.883411 kcal Electronic energy + Delta-G solvation = -24535.707946 eV Core-core repulsion = 20619.681841 eV Total energy + Delta-G solvation = -3916.026106 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -49.56539 -41.39245 -39.90977 -38.07625 -35.30164 -33.41874 -32.49268 -32.09103 -30.75269 -30.11668 -28.69066 -25.67232 -25.16178 -24.56576 -23.50466 -21.47552 -20.68196 -19.27197 -18.69358 -17.92896 -16.91760 -16.71360 -16.62699 -16.17476 -15.81613 -15.54434 -15.28150 -15.10874 -15.01811 -14.71202 -14.29019 -14.09068 -13.96738 -13.76235 -13.49543 -13.03728 -12.85113 -12.75348 -12.35353 -12.16733 -11.87793 -11.51396 -11.33395 -11.29412 -11.11621 -11.05640 -10.67479 -10.29935 -9.94063 -9.91607 -9.68053 -9.25653 -9.05282 -8.81945 -8.57493 -6.98711 -6.34104 -4.06655 0.39128 0.73242 2.13821 2.71972 2.81899 2.94396 3.24103 3.27278 3.29476 3.45447 3.57226 3.71722 3.94190 4.14338 4.27829 4.37330 4.47928 4.63592 4.64260 4.69894 4.97556 5.04663 5.05724 5.07616 5.19009 5.22599 5.28557 5.43407 5.62753 5.66376 5.74304 5.78040 5.91546 5.96345 6.05873 6.33158 6.54513 6.89741 7.40341 7.62404 7.88779 8.32314 8.36284 9.11818 10.75033 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.032497 B = 0.002065 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.423903 B =13552.953474 C =14077.945319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.139 3.861 3 H 0.092 0.908 4 N -0.691 5.691 5 C 0.469 3.531 6 C -0.320 4.320 7 C 0.385 3.615 8 F -0.102 7.102 9 N -0.595 5.595 10 C 0.377 3.623 11 N -0.583 5.583 12 C 0.140 3.860 13 H 0.096 0.904 14 C -0.165 4.165 15 N -0.730 5.730 16 C 0.535 3.465 17 O -0.515 6.515 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.523 4.523 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.879 5.879 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.236 1.236 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.415 0.585 32 H 0.155 0.845 33 H 0.208 0.792 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.400 0.600 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.159 2.196 26.853 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.033 3.967 3 H 0.110 0.890 4 N -0.323 5.323 5 C 0.224 3.776 6 C -0.350 4.350 7 C 0.227 3.773 8 F -0.081 7.081 9 N -0.320 5.320 10 C 0.088 3.912 11 N -0.309 5.309 12 C 0.034 3.966 13 H 0.114 0.886 14 C -0.224 4.224 15 N -0.385 5.385 16 C 0.321 3.679 17 O -0.389 6.389 18 C -0.275 4.275 19 S 0.086 5.914 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.515 5.515 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.160 1.160 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.252 0.748 32 H 0.172 0.828 33 H 0.224 0.776 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.235 0.765 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.808 -0.047 27.110 27.725 hybrid contribution -0.711 1.620 -1.027 2.046 sum 5.098 1.573 26.083 26.623 Atomic orbital electron populations 1.22311 0.93971 1.03695 1.03007 1.21348 0.94920 0.97170 0.83287 0.89016 1.44487 1.68834 1.13393 1.05544 1.18208 0.85635 0.87246 0.86493 1.21836 1.17158 0.95959 1.00015 1.18010 0.90323 0.79438 0.89536 1.91671 1.89181 1.30813 1.96392 1.67867 1.20722 1.10984 1.32458 1.24553 0.87710 0.84941 0.93982 1.68028 1.22992 1.40301 0.99548 1.20954 0.94619 0.97905 0.83152 0.88569 1.22210 0.94575 1.02540 1.03027 1.45885 1.69595 1.13992 1.09013 1.20297 0.76741 0.87196 0.83646 1.90711 1.48138 1.15723 1.84279 1.23282 1.04523 1.03575 0.96144 1.84809 1.87175 1.16724 1.02729 1.22301 1.50510 0.98807 0.95391 0.89351 1.24722 0.93344 0.98308 0.94968 1.69936 1.43192 1.35824 1.02593 0.86732 0.81087 0.84796 0.79210 1.19199 1.19909 1.15952 0.91908 0.90429 0.91437 0.74771 0.82756 0.77596 0.92300 0.91686 0.91122 0.76518 0.88392 0.88349 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 9.31 37.16 0.35 -0.72 16 2 C 0.14 0.83 1.91 -67.94 -0.13 0.70 16 3 H 0.09 0.45 6.50 -51.93 -0.34 0.12 16 4 N -0.69 -4.38 4.53 -53.81 -0.24 -4.62 16 5 C 0.47 3.64 7.69 -154.76 -1.19 2.45 16 6 C -0.32 -2.41 8.94 -39.04 -0.35 -2.76 16 7 C 0.38 3.49 8.50 -17.05 -0.14 3.34 16 8 F -0.10 -0.95 17.30 2.25 0.04 -0.91 16 9 N -0.59 -5.54 10.45 -14.98 -0.16 -5.70 16 10 C 0.38 2.80 12.28 -92.21 -1.13 1.67 16 11 N -0.58 -4.84 10.47 -13.84 -0.14 -4.98 16 12 C 0.14 1.17 2.20 -67.94 -0.15 1.02 16 13 H 0.10 0.97 7.58 -51.93 -0.39 0.58 16 14 C -0.17 -1.42 9.33 37.16 0.35 -1.07 16 15 N -0.73 -7.25 4.38 -53.81 -0.24 -7.49 16 16 C 0.54 8.26 7.81 -10.98 -0.09 8.18 16 17 O -0.51 -9.95 15.53 5.56 0.09 -9.87 16 18 C -0.12 -2.19 6.16 36.01 0.22 -1.97 16 19 S -0.14 -3.40 18.55 -107.50 -1.99 -5.40 16 20 C -0.52 -14.59 10.04 30.94 0.31 -14.28 16 21 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 22 C 0.10 2.73 5.50 -17.43 -0.10 2.63 16 23 N -0.88 -26.02 13.97 55.49 0.78 -25.24 16 24 Si 0.86 21.29 27.74 -169.99 -4.72 16.57 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 28 H 0.06 0.37 7.81 -51.93 -0.41 -0.03 16 29 H 0.08 0.47 7.45 -51.93 -0.39 0.08 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.41 2.50 8.51 -40.82 -0.35 2.15 16 32 H 0.15 0.88 6.33 -52.49 -0.33 0.55 16 33 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.48 7.44 -51.93 -0.39 0.09 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.40 2.85 8.39 -40.82 -0.34 2.50 16 38 H 0.10 1.58 8.14 -51.92 -0.42 1.16 16 39 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -34.03 358.64 -8.28 -42.32 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.05 Total: 0.72 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -2.05 Total: -0.81 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.01 Total: -48.03 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.04 Total: -0.91 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.72 Total: 16.57 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.03 -8.28 -42.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112911223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.434 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds