Wall clock time and date at job start Tue Mar 31 2020 16:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 119.99836 * 2 1 3 5 5 C 1.38570 * 120.00194 * 275.00031 * 4 2 1 6 6 C 1.39465 * 120.51555 * 359.72624 * 5 4 2 7 7 C 1.38467 * 118.30895 * 179.80141 * 6 5 4 8 8 F 1.35103 * 120.43010 * 180.21767 * 7 6 5 9 9 N 1.32790 * 119.14297 * 0.47148 * 7 6 5 10 10 C 1.31764 * 120.95981 * 359.74687 * 9 7 6 11 11 N 1.31756 * 121.86102 * 0.02562 * 10 9 7 12 12 C 1.52995 * 109.47187 * 240.00502 * 2 1 3 13 13 H 1.09002 * 109.46830 * 299.99492 * 12 2 1 14 14 C 1.53000 * 109.47187 * 180.02562 * 12 2 1 15 15 N 1.46496 * 109.47630 * 59.99640 * 12 2 1 16 16 C 1.34777 * 120.00258 * 205.00405 * 15 12 2 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 12 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 12 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00457 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47357 * 89.99660 * 24 22 20 26 26 H 1.48495 * 109.47496 * 209.99879 * 24 22 20 27 27 H 1.48500 * 109.46916 * 330.00121 * 24 22 20 28 28 H 1.08998 * 109.47335 * 299.99191 * 1 2 3 29 29 H 1.09002 * 109.47254 * 60.00358 * 1 2 3 30 30 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99694 * 95.00601 * 4 2 1 32 32 H 1.08000 * 120.83865 * 359.97438 * 6 5 4 33 33 H 1.07994 * 119.06853 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.46821 * 299.99498 * 14 12 2 35 35 H 1.08992 * 109.47302 * 59.99702 * 14 12 2 36 36 H 1.09006 * 109.47229 * 180.02562 * 14 12 2 37 37 H 0.96999 * 119.99694 * 24.99795 * 15 12 2 38 38 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 39 39 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 40 40 H 0.97002 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1507 0.0007 2.3898 6 6 1.8275 1.3554 2.4632 7 6 1.9730 2.0002 3.6799 8 9 1.6682 3.3109 3.8005 9 7 2.4209 1.3150 4.7254 10 6 2.7213 0.0364 4.6197 11 7 2.5933 -0.6163 3.4823 12 6 2.0400 -0.7211 -1.2493 13 1 1.6767 -1.7488 -1.2493 14 6 3.5700 -0.7217 -1.2489 15 7 1.5517 -0.0306 -2.4454 16 6 1.4229 -0.7029 -3.6064 17 8 1.7118 -1.8795 -3.6610 18 6 0.9200 0.0075 -4.8367 19 16 0.8600 -1.1553 -6.2225 20 6 0.2553 -0.0905 -7.4894 21 1 0.0445 0.9455 -7.2690 22 6 0.0488 -0.5835 -8.7704 23 7 -0.4024 0.2121 -9.7169 24 14 0.4114 -2.3760 -9.1511 25 1 -0.8072 -3.1896 -8.9097 26 1 0.8207 -2.5072 -10.5725 27 1 1.5089 -2.8562 -8.2736 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2491 -1.6317 1.1525 32 1 1.4701 1.8872 1.5938 33 1 3.0827 -0.4914 5.4898 34 1 3.9337 0.3059 -1.2487 35 1 3.9330 -1.2358 -0.3590 36 1 3.9334 -1.2351 -2.1392 37 1 1.3209 0.9106 -2.4018 38 1 -0.0794 0.3991 -4.6471 39 1 1.5922 0.8298 -5.0817 40 1 -0.5464 -0.1322 -10.6123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112911223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:12 Heat of formation + Delta-G solvation = -51.178195 kcal Electronic energy + Delta-G solvation = -24536.718084 eV Core-core repulsion = 20619.681841 eV Total energy + Delta-G solvation = -3917.036243 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -50.21663 -41.97483 -40.94738 -38.88005 -36.13893 -34.66335 -34.11832 -32.87740 -31.61696 -30.66803 -29.84549 -27.83845 -25.71598 -25.19069 -24.20406 -22.19624 -21.72941 -20.01089 -19.81615 -19.22969 -18.00350 -17.56584 -17.34980 -17.08994 -16.82554 -16.56793 -16.46539 -16.22369 -15.74653 -15.67350 -15.24436 -15.03399 -14.94480 -14.81197 -14.62901 -14.33178 -13.91471 -13.55119 -13.35218 -13.27300 -13.00898 -12.84913 -12.66702 -12.57499 -12.13350 -11.93079 -11.85511 -11.70272 -11.16559 -11.01789 -10.88560 -10.54316 -10.51729 -10.22628 -9.37830 -8.97931 -8.50886 -6.21077 -0.18416 0.14065 0.98732 1.31707 1.42794 1.50312 1.57260 1.71194 2.24597 2.31433 2.40471 2.69179 2.73563 2.87542 3.21187 3.32811 3.59484 3.78804 3.87655 3.91923 4.07286 4.14920 4.26234 4.35324 4.42705 4.50595 4.58693 4.68552 4.71621 4.80487 4.91166 5.18708 5.22657 5.26012 5.40923 5.52355 5.71426 5.98055 6.12700 6.36056 6.44526 6.94591 7.06207 7.19423 8.61311 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.032497 B = 0.002065 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.423903 B =13552.953474 C =14077.945319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.150 3.850 3 H 0.113 0.887 4 N -0.685 5.685 5 C 0.464 3.536 6 C -0.314 4.314 7 C 0.368 3.632 8 F -0.108 7.108 9 N -0.617 5.617 10 C 0.376 3.624 11 N -0.596 5.596 12 C 0.143 3.857 13 H 0.081 0.919 14 C -0.160 4.160 15 N -0.703 5.703 16 C 0.542 3.458 17 O -0.558 6.558 18 C -0.112 4.112 19 S -0.177 6.177 20 C -0.527 4.527 21 H 0.063 0.937 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.263 1.263 26 H -0.262 1.262 27 H -0.236 1.236 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.417 0.583 32 H 0.174 0.826 33 H 0.237 0.763 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.419 0.581 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.602 2.200 28.494 29.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.045 3.955 3 H 0.131 0.869 4 N -0.316 5.316 5 C 0.219 3.781 6 C -0.343 4.343 7 C 0.210 3.790 8 F -0.087 7.087 9 N -0.343 5.343 10 C 0.088 3.912 11 N -0.321 5.321 12 C 0.037 3.963 13 H 0.099 0.901 14 C -0.219 4.219 15 N -0.358 5.358 16 C 0.327 3.673 17 O -0.435 6.435 18 C -0.263 4.263 19 S 0.049 5.951 20 C -0.675 4.675 21 H 0.082 0.918 22 C -0.162 4.162 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.188 1.188 26 H -0.186 1.186 27 H -0.160 1.160 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.255 0.745 32 H 0.191 0.809 33 H 0.253 0.747 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.257 0.743 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.250 0.002 28.787 29.457 hybrid contribution -0.839 1.709 -1.380 2.351 sum 5.411 1.711 27.406 27.988 Atomic orbital electron populations 1.22307 0.93819 1.03160 1.03574 1.21246 0.94808 0.97624 0.81865 0.86936 1.44446 1.68495 1.13445 1.05220 1.18329 0.85636 0.87453 0.86706 1.21950 1.16532 0.95804 1.00056 1.18241 0.91076 0.79406 0.90238 1.91651 1.89349 1.31267 1.96475 1.67888 1.21523 1.11858 1.33034 1.25180 0.86894 0.84494 0.94664 1.68081 1.23431 1.40642 0.99976 1.21000 0.94674 0.97373 0.83225 0.90099 1.22152 0.94298 1.03107 1.02293 1.45569 1.67691 1.14684 1.07849 1.19860 0.76611 0.86497 0.84316 1.90707 1.50385 1.17448 1.84975 1.23280 1.06355 1.02256 0.94421 1.84734 1.86935 1.18745 1.04641 1.22468 1.49924 0.98342 0.96746 0.91836 1.25574 0.93355 1.02185 0.95040 1.70018 1.44568 1.37707 1.03228 0.85868 0.80971 0.80081 0.79456 1.18761 1.18601 1.15982 0.91246 0.89970 0.92572 0.74526 0.80887 0.74667 0.91035 0.90330 0.93983 0.74345 0.86579 0.86750 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.31 71.98 0.67 -0.96 16 2 C 0.15 1.33 1.91 44.99 0.09 1.42 16 3 H 0.11 0.62 6.50 -2.39 -0.02 0.61 16 4 N -0.68 -6.93 4.53 -324.15 -1.47 -8.40 16 5 C 0.46 6.11 7.69 133.09 1.02 7.14 16 6 C -0.31 -3.98 8.94 22.62 0.20 -3.77 16 7 C 0.37 6.13 8.50 84.60 0.72 6.85 16 8 F -0.11 -1.91 17.30 44.97 0.78 -1.13 16 9 N -0.62 -10.71 10.45 -201.32 -2.10 -12.81 16 10 C 0.38 4.93 12.28 180.90 2.22 7.15 16 11 N -0.60 -8.72 10.47 -197.70 -2.07 -10.79 16 12 C 0.14 2.07 2.20 44.99 0.10 2.17 16 13 H 0.08 1.52 7.58 -2.39 -0.02 1.50 16 14 C -0.16 -2.41 9.33 71.98 0.67 -1.74 16 15 N -0.70 -12.12 4.38 -442.54 -1.94 -14.06 16 16 C 0.54 15.82 7.81 87.66 0.68 16.50 16 17 O -0.56 -21.17 15.53 -3.03 -0.05 -21.22 16 18 C -0.11 -3.77 6.16 71.24 0.44 -3.33 16 19 S -0.18 -8.50 18.55 -56.49 -1.05 -9.54 16 20 C -0.53 -29.68 10.04 67.96 0.68 -29.00 16 21 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 22 C 0.04 2.52 5.50 84.86 0.47 2.98 16 23 N -0.92 -54.90 13.97 21.65 0.30 -54.59 16 24 Si 0.91 44.05 27.74 68.60 1.90 45.96 16 25 H -0.26 -12.37 7.11 99.48 0.71 -11.67 16 26 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 27 H -0.24 -11.30 6.74 99.48 0.67 -10.63 16 28 H 0.07 0.62 7.81 -2.39 -0.02 0.60 16 29 H 0.08 0.73 7.45 -2.39 -0.02 0.71 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.42 4.12 8.51 -92.71 -0.79 3.33 16 32 H 0.17 1.39 6.33 -2.91 -0.02 1.37 16 33 H 0.24 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.98 7.44 -2.39 -0.02 0.96 16 36 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.42 4.40 8.39 -92.71 -0.78 3.62 16 38 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 39 H 0.11 3.51 8.14 -2.40 -0.02 3.49 16 40 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -74.80 358.64 1.77 -73.04 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -0.50 Total: 8.15 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 7.96 Total: 5.40 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -7.28 Total: -100.65 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.78 Total: -1.13 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.90 Total: 45.96 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.05 Total: -9.54 kcal Total: -74.80 1.77 -73.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112911223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.858 kcal (2) G-P(sol) polarization free energy of solvation -74.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds