Wall clock time and date at job start Tue Mar 31 2020 16:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47435 * 2 1 4 4 N 1.46510 * 109.47004 * 119.99773 * 2 1 3 5 5 C 1.39150 * 119.99706 * 275.00215 * 4 2 1 6 6 C 1.39203 * 120.06590 * 359.97438 * 5 4 2 7 7 N 1.32014 * 119.93259 * 180.02562 * 6 5 4 8 8 C 1.32396 * 120.05471 * 0.02562 * 7 6 5 9 9 F 1.35098 * 119.93691 * 179.97438 * 8 7 6 10 10 C 1.38465 * 120.12671 * 0.02562 * 8 7 6 11 11 N 1.32213 * 120.06877 * 359.97438 * 10 8 7 12 12 C 1.52998 * 109.47399 * 239.99387 * 2 1 3 13 13 H 1.09001 * 109.47327 * 300.00679 * 12 2 1 14 14 C 1.52993 * 109.47399 * 179.97438 * 12 2 1 15 15 N 1.46505 * 109.46424 * 60.00369 * 12 2 1 16 16 C 1.34779 * 119.99397 * 204.99969 * 15 12 2 17 17 O 1.21280 * 120.00647 * 0.02562 * 16 15 12 18 18 C 1.50703 * 119.99557 * 180.02562 * 16 15 12 19 19 S 1.81007 * 109.47172 * 180.02562 * 18 16 15 20 20 C 1.76195 * 100.00223 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99516 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00064 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99895 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99899 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47113 * 60.00003 * 24 22 20 26 26 H 1.48500 * 109.46988 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47320 * 299.99879 * 24 22 20 28 28 H 1.08996 * 109.47468 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47189 * 300.00343 * 1 2 3 30 30 H 1.09001 * 109.47119 * 60.00095 * 1 2 3 31 31 H 0.96994 * 119.99700 * 94.99665 * 4 2 1 32 32 H 1.07997 * 120.03389 * 0.05234 * 6 5 4 33 33 H 1.07999 * 119.96939 * 179.97438 * 10 8 7 34 34 H 1.08997 * 109.47415 * 180.02562 * 14 12 2 35 35 H 1.09001 * 109.47435 * 300.00613 * 14 12 2 36 36 H 1.09001 * 109.47119 * 60.00518 * 14 12 2 37 37 H 0.96989 * 120.00551 * 25.00304 * 15 12 2 38 38 H 1.09001 * 109.47251 * 299.99791 * 18 16 15 39 39 H 1.09003 * 109.47198 * 60.00048 * 18 16 15 40 40 H 0.96993 * 119.99552 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1511 0.0037 2.3949 6 6 1.8209 1.3544 2.4587 7 7 1.9484 2.0107 3.5971 8 6 2.3903 1.3852 4.6771 9 9 2.5203 2.0592 5.8407 10 6 2.7204 0.0419 4.6160 11 7 2.5947 -0.6201 3.4785 12 6 2.0400 -0.7214 -1.2491 13 1 1.6766 -1.7490 -1.2491 14 6 3.5699 -0.7208 -1.2494 15 7 1.5517 -0.0307 -2.4453 16 6 1.4230 -0.7032 -3.6063 17 8 1.7109 -1.8800 -3.6606 18 6 0.9212 0.0074 -4.8369 19 16 0.8595 -1.1559 -6.2223 20 6 0.2564 -0.0907 -7.4897 21 1 0.0480 0.9460 -7.2698 22 6 0.0493 -0.5839 -8.7704 23 7 0.3029 -1.8475 -9.0381 24 14 -0.5893 0.5456 -10.1142 25 1 0.3629 1.6678 -10.3116 26 1 -0.7228 -0.2182 -11.3808 27 1 -1.9151 1.0851 -9.7188 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2489 -1.6317 1.1527 32 1 1.4603 1.8650 1.5779 33 1 3.0811 -0.4657 5.4984 34 1 3.9333 -1.2343 -2.1396 35 1 3.9329 0.3070 -1.2497 36 1 3.9336 -1.2344 -0.3594 37 1 1.3210 0.9104 -2.4019 38 1 -0.0779 0.4000 -4.6478 39 1 1.5942 0.8292 -5.0818 40 1 0.1578 -2.1922 -9.9330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112911715.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:34 Heat of formation + Delta-G solvation = -24.899548 kcal Electronic energy + Delta-G solvation = -24371.634347 eV Core-core repulsion = 20455.737631 eV Total energy + Delta-G solvation = -3915.896716 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.29643 -41.52889 -39.78993 -37.88358 -35.19989 -34.42877 -32.47503 -31.87272 -30.46604 -29.42023 -28.47104 -25.59826 -25.53075 -24.55966 -23.46353 -21.41919 -20.54913 -19.02697 -18.43799 -18.03210 -17.81666 -16.67809 -16.57222 -16.19312 -15.68282 -15.25750 -15.11366 -14.89570 -14.84414 -14.43820 -14.18505 -14.05125 -13.93451 -13.69439 -13.33561 -12.91846 -12.69847 -12.55352 -12.20592 -12.14307 -12.02912 -11.88217 -11.64961 -11.13400 -11.09029 -11.07336 -10.81054 -10.72772 -9.87840 -9.74504 -9.54458 -9.14433 -9.08189 -8.33859 -8.30546 -6.55888 -6.26186 -3.97442 0.29429 0.62256 2.19829 2.95296 2.98464 3.07261 3.12743 3.20287 3.24699 3.27707 3.61679 3.75568 3.86927 4.05390 4.16049 4.31495 4.46427 4.57970 4.64649 4.90590 4.97688 5.09068 5.12655 5.15278 5.28422 5.32149 5.45983 5.56872 5.72190 5.79281 5.79974 5.82581 6.03240 6.05945 6.10710 6.44759 6.79152 6.80611 7.28999 7.52116 7.55127 8.30280 8.46754 9.19173 10.81124 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.036992 B = 0.001899 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.733378 B =14742.663445 C =15177.130774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.140 3.860 3 H 0.090 0.910 4 N -0.697 5.697 5 C 0.356 3.644 6 C 0.027 3.973 7 N -0.429 5.429 8 C 0.180 3.820 9 F -0.110 7.110 10 C 0.100 3.900 11 N -0.480 5.480 12 C 0.140 3.860 13 H 0.096 0.904 14 C -0.165 4.165 15 N -0.732 5.732 16 C 0.536 3.464 17 O -0.513 6.513 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.412 0.588 32 H 0.176 0.824 33 H 0.181 0.819 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.399 0.601 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 6.282 25.291 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.034 3.966 3 H 0.108 0.892 4 N -0.330 5.330 5 C 0.116 3.884 6 C -0.142 4.142 7 N -0.147 5.147 8 C 0.023 3.977 9 F -0.089 7.089 10 C -0.063 4.063 11 N -0.202 5.202 12 C 0.034 3.966 13 H 0.114 0.886 14 C -0.223 4.223 15 N -0.387 5.387 16 C 0.322 3.678 17 O -0.386 6.386 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.250 0.750 32 H 0.193 0.807 33 H 0.198 0.802 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.233 0.767 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.044 4.270 24.948 25.632 hybrid contribution -0.737 2.370 -0.535 2.539 sum 3.307 6.640 24.414 25.516 Atomic orbital electron populations 1.22330 0.94091 1.03754 1.02910 1.21333 0.94816 0.96994 0.83421 0.89176 1.44462 1.70066 1.13246 1.05195 1.19331 0.91553 0.90075 0.87415 1.22972 1.04369 0.90861 0.96015 1.67581 1.09690 1.38921 0.98540 1.18782 1.05846 0.89610 0.83443 1.91624 1.93633 1.80838 1.42855 1.23295 0.96073 0.90229 0.96717 1.68038 1.16791 1.37222 0.98105 1.20940 0.94550 0.97948 0.83176 0.88588 1.22206 0.94671 1.02451 1.02996 1.45933 1.69805 1.13899 1.09068 1.20323 0.76661 0.87204 0.83573 1.90714 1.47962 1.15726 1.84243 1.23537 1.03725 1.04951 0.98236 1.85409 1.86356 1.12723 0.98763 1.22818 1.51215 0.98109 0.96394 0.90943 1.24993 0.95049 0.95551 0.97966 1.70002 1.45363 1.13188 1.21685 0.86221 0.79317 0.80008 0.79943 1.19927 1.20802 1.19921 0.91397 0.92007 0.90416 0.75016 0.80746 0.80192 0.91128 0.92368 0.91757 0.76682 0.89120 0.89119 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 9.26 37.15 0.34 -0.73 16 2 C 0.14 0.84 1.90 -67.93 -0.13 0.72 16 3 H 0.09 0.42 6.47 -51.93 -0.34 0.08 16 4 N -0.70 -4.50 4.56 -53.81 -0.25 -4.74 16 5 C 0.36 2.79 7.65 -154.62 -1.18 1.60 16 6 C 0.03 0.21 10.02 -17.12 -0.17 0.04 16 7 N -0.43 -4.22 10.50 -13.25 -0.14 -4.36 16 8 C 0.18 1.63 8.43 -17.22 -0.15 1.48 16 9 F -0.11 -1.02 17.29 2.25 0.04 -0.98 16 10 C 0.10 0.74 11.20 -17.30 -0.19 0.54 16 11 N -0.48 -4.09 10.53 -12.17 -0.13 -4.21 16 12 C 0.14 1.23 2.21 -67.93 -0.15 1.08 16 13 H 0.10 1.03 7.58 -51.93 -0.39 0.64 16 14 C -0.16 -1.49 9.32 37.15 0.35 -1.14 16 15 N -0.73 -7.66 4.38 -53.81 -0.24 -7.90 16 16 C 0.54 8.76 7.81 -10.98 -0.09 8.68 16 17 O -0.51 -10.52 15.52 5.56 0.09 -10.43 16 18 C -0.15 -2.83 6.16 36.01 0.22 -2.61 16 19 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 20 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 21 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.61 13.22 55.49 0.73 -24.87 16 24 Si 0.92 20.91 29.55 -169.99 -5.02 15.89 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.36 7.69 -51.93 -0.40 -0.04 16 30 H 0.08 0.48 7.45 -51.93 -0.39 0.09 16 31 H 0.41 2.62 8.51 -40.82 -0.35 2.27 16 32 H 0.18 0.96 6.10 -52.49 -0.32 0.64 16 33 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.50 7.45 -51.93 -0.39 0.11 16 37 H 0.40 2.99 8.39 -40.82 -0.34 2.64 16 38 H 0.09 1.52 8.14 -51.91 -0.42 1.10 16 39 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -34.43 360.92 -7.63 -42.06 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.99 Total: 0.77 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.95 Total: -2.90 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.01 Total: -46.09 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.43 -7.63 -42.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112911715.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.158 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds