Wall clock time and date at job start Tue Mar 31 2020 16:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47435 * 2 1 4 4 N 1.46510 * 109.47004 * 119.99773 * 2 1 3 5 5 C 1.39150 * 119.99706 * 275.00215 * 4 2 1 6 6 C 1.39203 * 120.06590 * 359.97438 * 5 4 2 7 7 N 1.32014 * 119.93259 * 180.02562 * 6 5 4 8 8 C 1.32396 * 120.05471 * 0.02562 * 7 6 5 9 9 F 1.35098 * 119.93691 * 179.97438 * 8 7 6 10 10 C 1.38465 * 120.12671 * 0.02562 * 8 7 6 11 11 N 1.32213 * 120.06877 * 359.97438 * 10 8 7 12 12 C 1.52998 * 109.47399 * 239.99387 * 2 1 3 13 13 H 1.09001 * 109.47327 * 300.00679 * 12 2 1 14 14 C 1.52993 * 109.47399 * 179.97438 * 12 2 1 15 15 N 1.46505 * 109.46424 * 60.00369 * 12 2 1 16 16 C 1.34779 * 119.99397 * 204.99969 * 15 12 2 17 17 O 1.21280 * 120.00647 * 0.02562 * 16 15 12 18 18 C 1.50703 * 119.99557 * 180.02562 * 16 15 12 19 19 S 1.81007 * 109.47172 * 180.02562 * 18 16 15 20 20 C 1.76195 * 100.00223 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99516 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00064 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99895 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99899 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47113 * 60.00003 * 24 22 20 26 26 H 1.48500 * 109.46988 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47320 * 299.99879 * 24 22 20 28 28 H 1.08996 * 109.47468 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47189 * 300.00343 * 1 2 3 30 30 H 1.09001 * 109.47119 * 60.00095 * 1 2 3 31 31 H 0.96994 * 119.99700 * 94.99665 * 4 2 1 32 32 H 1.07997 * 120.03389 * 0.05234 * 6 5 4 33 33 H 1.07999 * 119.96939 * 179.97438 * 10 8 7 34 34 H 1.08997 * 109.47415 * 180.02562 * 14 12 2 35 35 H 1.09001 * 109.47435 * 300.00613 * 14 12 2 36 36 H 1.09001 * 109.47119 * 60.00518 * 14 12 2 37 37 H 0.96989 * 120.00551 * 25.00304 * 15 12 2 38 38 H 1.09001 * 109.47251 * 299.99791 * 18 16 15 39 39 H 1.09003 * 109.47198 * 60.00048 * 18 16 15 40 40 H 0.96993 * 119.99552 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1511 0.0037 2.3949 6 6 1.8209 1.3544 2.4587 7 7 1.9484 2.0107 3.5971 8 6 2.3903 1.3852 4.6771 9 9 2.5203 2.0592 5.8407 10 6 2.7204 0.0419 4.6160 11 7 2.5947 -0.6201 3.4785 12 6 2.0400 -0.7214 -1.2491 13 1 1.6766 -1.7490 -1.2491 14 6 3.5699 -0.7208 -1.2494 15 7 1.5517 -0.0307 -2.4453 16 6 1.4230 -0.7032 -3.6063 17 8 1.7109 -1.8800 -3.6606 18 6 0.9212 0.0074 -4.8369 19 16 0.8595 -1.1559 -6.2223 20 6 0.2564 -0.0907 -7.4897 21 1 0.0480 0.9460 -7.2698 22 6 0.0493 -0.5839 -8.7704 23 7 0.3029 -1.8475 -9.0381 24 14 -0.5893 0.5456 -10.1142 25 1 0.3629 1.6678 -10.3116 26 1 -0.7228 -0.2182 -11.3808 27 1 -1.9151 1.0851 -9.7188 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2489 -1.6317 1.1527 32 1 1.4603 1.8650 1.5779 33 1 3.0811 -0.4657 5.4984 34 1 3.9333 -1.2343 -2.1396 35 1 3.9329 0.3070 -1.2497 36 1 3.9336 -1.2344 -0.3594 37 1 1.3210 0.9104 -2.4019 38 1 -0.0779 0.4000 -4.6478 39 1 1.5942 0.8292 -5.0818 40 1 0.1578 -2.1922 -9.9330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112911715.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:33 Heat of formation + Delta-G solvation = -50.235277 kcal Electronic energy + Delta-G solvation = -24372.732987 eV Core-core repulsion = 20455.737631 eV Total energy + Delta-G solvation = -3916.995355 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.94474 -42.12435 -40.88906 -38.73831 -36.00552 -35.16578 -34.56513 -32.81326 -31.26782 -30.17106 -29.53305 -27.63318 -26.17580 -25.19165 -24.18909 -22.15962 -21.67681 -19.94261 -19.53527 -19.05520 -18.59370 -17.82815 -17.29618 -17.15389 -16.86003 -16.42310 -16.36370 -15.93336 -15.73137 -15.53622 -15.00738 -14.93663 -14.73823 -14.59392 -14.45699 -14.28419 -13.78358 -13.39293 -13.21961 -13.14606 -12.85739 -12.76760 -12.74373 -12.63320 -12.57292 -12.37321 -11.83634 -11.70579 -11.30412 -11.11246 -10.93775 -10.34291 -10.24618 -10.16123 -8.90841 -8.63827 -8.33035 -6.10311 -0.26766 0.00363 1.25965 1.44651 1.44895 1.53884 1.64004 1.73487 2.28850 2.40123 2.49727 2.54289 3.01260 3.19099 3.30879 3.35850 3.44626 3.72538 3.84371 4.00325 4.02995 4.10388 4.34426 4.37987 4.42184 4.48411 4.56316 4.71362 4.75962 4.83575 4.94785 5.20578 5.25050 5.30077 5.43034 5.43863 5.58767 6.21276 6.21585 6.23333 6.51743 6.71658 7.08679 7.27682 8.75643 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.036992 B = 0.001899 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.733378 B =14742.663445 C =15177.130774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.152 3.848 3 H 0.117 0.883 4 N -0.691 5.691 5 C 0.356 3.644 6 C 0.028 3.972 7 N -0.454 5.454 8 C 0.161 3.839 9 F -0.117 7.117 10 C 0.108 3.892 11 N -0.497 5.497 12 C 0.142 3.858 13 H 0.076 0.924 14 C -0.160 4.160 15 N -0.703 5.703 16 C 0.540 3.460 17 O -0.562 6.562 18 C -0.130 4.130 19 S -0.153 6.153 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.262 1.262 26 H -0.281 1.281 27 H -0.262 1.262 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.413 0.587 32 H 0.199 0.801 33 H 0.209 0.791 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.419 0.581 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 8.650 26.251 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.047 3.953 3 H 0.135 0.865 4 N -0.323 5.323 5 C 0.116 3.884 6 C -0.142 4.142 7 N -0.172 5.172 8 C 0.004 3.996 9 F -0.096 7.096 10 C -0.054 4.054 11 N -0.219 5.219 12 C 0.037 3.963 13 H 0.095 0.905 14 C -0.218 4.218 15 N -0.358 5.358 16 C 0.326 3.674 17 O -0.439 6.439 18 C -0.282 4.282 19 S 0.074 5.926 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.818 3.182 25 H -0.187 1.187 26 H -0.206 1.206 27 H -0.186 1.186 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.251 0.749 32 H 0.215 0.785 33 H 0.225 0.775 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.257 0.743 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.689 6.689 25.962 27.062 hybrid contribution -0.595 1.637 -0.700 1.877 sum 3.094 8.326 25.262 26.778 Atomic orbital electron populations 1.22329 0.93884 1.03095 1.03664 1.21242 0.94742 0.97611 0.81734 0.86546 1.44437 1.69676 1.13259 1.04947 1.19428 0.91251 0.90246 0.87509 1.23304 1.03911 0.90820 0.96159 1.67551 1.10436 1.39900 0.99321 1.18984 1.06970 0.90308 0.83298 1.91600 1.93797 1.81054 1.43194 1.23667 0.94889 0.89618 0.97238 1.68086 1.17539 1.37675 0.98636 1.20988 0.94587 0.97312 0.83442 0.90540 1.22147 0.94436 1.03143 1.02087 1.45573 1.67828 1.14617 1.07794 1.19971 0.76502 0.86489 0.84463 1.90709 1.50390 1.17775 1.85044 1.23382 1.05743 1.03163 0.95872 1.85590 1.86717 1.17314 1.02948 1.23180 1.50800 0.98505 0.96852 0.89800 1.26107 0.95160 0.97145 1.00785 1.70174 1.46884 1.15435 1.22282 0.85033 0.79119 0.77786 0.76256 1.18693 1.20639 1.18627 0.92833 0.90998 0.89910 0.74917 0.78484 0.77461 0.94369 0.90804 0.90387 0.74316 0.86926 0.87137 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.26 71.98 0.67 -1.00 16 2 C 0.15 1.38 1.90 44.99 0.09 1.47 16 3 H 0.12 0.54 6.47 -2.39 -0.02 0.53 16 4 N -0.69 -7.28 4.56 -324.14 -1.48 -8.76 16 5 C 0.36 4.75 7.65 132.95 1.02 5.77 16 6 C 0.03 0.36 10.02 84.90 0.85 1.21 16 7 N -0.45 -8.19 10.50 -195.82 -2.06 -10.24 16 8 C 0.16 2.71 8.43 84.66 0.71 3.43 16 9 F -0.12 -2.09 17.29 44.97 0.78 -1.31 16 10 C 0.11 1.42 11.20 84.69 0.95 2.36 16 11 N -0.50 -7.54 10.53 -192.40 -2.03 -9.57 16 12 C 0.14 2.25 2.21 44.99 0.10 2.35 16 13 H 0.08 1.60 7.58 -2.39 -0.02 1.58 16 14 C -0.16 -2.62 9.32 71.98 0.67 -1.95 16 15 N -0.70 -13.12 4.38 -442.53 -1.94 -15.06 16 16 C 0.54 17.19 7.81 87.66 0.68 17.88 16 17 O -0.56 -23.53 15.52 -3.03 -0.05 -23.57 16 18 C -0.13 -4.64 6.16 71.24 0.44 -4.21 16 19 S -0.15 -8.11 20.57 -56.49 -1.16 -9.28 16 20 C -0.55 -30.11 9.50 67.95 0.65 -29.46 16 21 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -55.01 13.22 21.65 0.29 -54.73 16 24 Si 1.00 42.53 29.55 68.60 2.03 44.56 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.60 7.69 -2.38 -0.02 0.58 16 30 H 0.08 0.74 7.45 -2.39 -0.02 0.72 16 31 H 0.41 4.50 8.51 -92.71 -0.79 3.71 16 32 H 0.20 1.43 6.10 -2.91 -0.02 1.41 16 33 H 0.21 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.08 7.45 -2.39 -0.02 1.06 16 37 H 0.42 4.68 8.39 -92.72 -0.78 3.90 16 38 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 39 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 40 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -78.02 360.92 1.20 -76.81 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -0.47 Total: 12.12 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 7.29 Total: -0.98 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -7.21 Total: -98.35 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.78 Total: -1.31 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.28 kcal Total: -78.02 1.20 -76.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112911715.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.578 kcal (2) G-P(sol) polarization free energy of solvation -78.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds