Wall clock time and date at job start Tue Mar 31 2020 16:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 S 1.81003 * 109.46853 * 179.97438 * 7 5 4 9 9 C 1.76196 * 99.99846 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00030 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99637 * 180.02562 * 9 8 7 12 12 N 1.31628 * 120.00513 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99570 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46946 * 90.00549 * 13 11 9 15 15 H 1.48504 * 109.46826 * 210.00017 * 13 11 9 16 16 H 1.48496 * 109.47486 * 329.99998 * 13 11 9 17 17 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 18 18 H 1.08995 * 109.47217 * 174.99856 * 17 2 1 19 19 C 1.52999 * 109.47085 * 294.99996 * 17 2 1 20 20 N 1.46498 * 109.47082 * 54.99895 * 17 2 1 21 21 C 1.39160 * 120.00261 * 154.99998 * 20 17 2 22 22 C 1.39211 * 120.05570 * 0.02562 * 21 20 17 23 23 N 1.32001 * 119.92760 * 180.02562 * 22 21 20 24 24 C 1.32408 * 120.05990 * 359.97438 * 23 22 21 25 25 F 1.35100 * 119.94020 * 180.02562 * 24 23 22 26 26 C 1.38463 * 120.12021 * 359.97438 * 24 23 22 27 27 N 1.32219 * 120.06959 * 359.72667 * 26 24 23 28 28 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 30 30 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 31 31 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 32 32 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 33 33 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 34 34 H 0.96995 * 120.00407 * 180.02562 * 12 11 9 35 35 H 1.09001 * 109.47298 * 179.97438 * 19 17 2 36 36 H 1.09000 * 109.47061 * 300.00140 * 19 17 2 37 37 H 1.09007 * 109.47030 * 60.00202 * 19 17 2 38 38 H 0.97003 * 120.00299 * 335.00732 * 20 17 2 39 39 H 1.07999 * 120.03881 * 359.97433 * 22 21 20 40 40 H 1.07999 * 119.96939 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 16 2.7105 0.4346 4.9731 9 6 3.3121 -0.6309 6.2408 10 1 3.5201 -1.6677 6.0212 11 6 3.5178 -0.1380 7.5220 12 7 3.2629 1.1252 7.7900 13 14 4.1550 -1.2680 8.8662 14 1 5.6395 -1.2306 8.8817 15 1 3.6347 -0.8151 10.1813 16 1 3.6974 -2.6562 8.6042 17 6 2.0400 -0.7213 -1.2492 18 1 3.1263 -0.6443 -1.2951 19 6 1.6353 -2.1955 -1.1879 20 7 1.4559 -0.1037 -2.4423 21 6 2.1119 -0.1968 -3.6661 22 6 3.3231 -0.8769 -3.7579 23 7 3.9435 -0.9631 -4.9199 24 6 3.4145 -0.4040 -5.9973 25 9 4.0512 -0.4943 -7.1854 26 6 2.2094 0.2720 -5.9087 27 7 1.5808 0.3564 -4.7485 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2490 -1.6316 1.1527 32 1 1.9759 -1.5504 3.8327 33 1 3.6480 -1.1212 3.3986 34 1 3.4070 1.4697 8.6852 35 1 1.9982 -2.7093 -2.0780 36 1 2.0699 -2.6549 -0.3001 37 1 0.5489 -2.2724 -1.1420 38 1 0.6118 0.3702 -2.3794 39 1 3.7551 -1.3327 -2.8793 40 1 1.7803 0.7275 -6.7889 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112911718.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:48 Heat of formation + Delta-G solvation = -20.315021 kcal Electronic energy + Delta-G solvation = -24377.753496 eV Core-core repulsion = 20462.055581 eV Total energy + Delta-G solvation = -3915.697916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.28167 -41.52548 -39.86337 -37.97019 -35.21818 -34.41304 -32.47440 -31.95105 -30.12171 -29.39146 -28.50119 -25.64770 -25.53430 -25.07215 -23.70880 -21.14173 -20.15071 -19.10413 -18.43129 -17.96788 -17.78755 -16.66994 -16.62878 -16.22320 -15.90099 -15.36188 -15.04168 -14.84762 -14.83098 -14.55279 -14.39718 -14.05735 -13.91633 -13.59233 -13.31911 -13.03401 -12.64590 -12.60027 -12.18505 -12.13014 -12.03753 -11.88495 -11.50038 -11.28619 -11.10149 -11.06886 -10.80562 -10.64507 -9.86818 -9.72980 -9.53984 -9.15134 -9.08848 -8.34100 -8.29927 -6.55717 -6.26196 -3.97349 0.30771 0.63541 2.22695 2.94683 2.97776 3.08408 3.14004 3.19277 3.24874 3.28356 3.60865 3.76928 3.88513 4.09549 4.15955 4.30625 4.38888 4.57371 4.65252 4.90905 4.95497 5.01606 5.09186 5.09416 5.22702 5.27500 5.36610 5.55397 5.61468 5.76528 5.80101 5.82639 6.04691 6.06177 6.10870 6.44740 6.79630 6.82303 7.30079 7.52125 7.55479 8.30557 8.46835 9.19279 10.81155 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.028928 B = 0.001938 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.690300 B =14446.976465 C =14807.726486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 H 0.097 0.903 4 N -0.733 5.733 5 C 0.535 3.465 6 O -0.513 6.513 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.139 3.861 18 H 0.093 0.907 19 C -0.177 4.177 20 N -0.699 5.699 21 C 0.354 3.646 22 C 0.029 3.971 23 N -0.429 5.429 24 C 0.181 3.819 25 F -0.110 7.110 26 C 0.099 3.901 27 N -0.480 5.480 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.399 0.601 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.269 0.731 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.412 0.588 39 H 0.176 0.824 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.031 -6.628 -25.298 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.034 3.966 3 H 0.115 0.885 4 N -0.390 5.390 5 C 0.321 3.679 6 O -0.386 6.386 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.685 4.685 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.502 5.502 13 Si 0.745 3.255 14 H -0.202 1.202 15 H -0.207 1.207 16 H -0.197 1.197 17 C 0.033 3.967 18 H 0.111 0.889 19 C -0.235 4.235 20 N -0.333 5.333 21 C 0.114 3.886 22 C -0.141 4.141 23 N -0.147 5.147 24 C 0.024 3.976 25 F -0.089 7.089 26 C -0.064 4.064 27 N -0.202 5.202 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.235 0.765 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.251 0.749 39 H 0.193 0.807 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.415 -4.589 -24.965 25.764 hybrid contribution 0.694 -2.385 0.542 2.543 sum -3.721 -6.974 -24.423 25.670 Atomic orbital electron populations 1.22273 0.94951 1.02652 1.02864 1.20908 0.94702 0.97787 0.83213 0.88479 1.46085 1.69838 1.13989 1.09087 1.20351 0.76666 0.87218 0.83651 1.90715 1.47902 1.15714 1.84283 1.23538 1.03736 1.04949 0.98241 1.85417 1.86383 1.12728 0.98747 1.22856 1.51161 0.98114 0.96326 0.90889 1.24998 0.95054 0.95562 0.97979 1.70009 1.45365 1.13238 1.21614 0.86165 0.79022 0.80166 0.80127 1.20244 1.20743 1.19689 1.21295 0.98837 0.92959 0.83581 0.88883 1.22406 1.03384 0.94885 1.02844 1.44628 1.25802 1.59351 1.03549 1.19361 0.90336 0.91530 0.87333 1.22997 0.93083 1.02470 0.95551 1.67584 1.32888 1.15795 0.98454 1.18788 0.92928 1.03123 0.82740 1.91625 1.81950 1.94675 1.40676 1.23291 0.90927 0.95675 0.96484 1.68028 1.33274 1.21052 0.97806 0.91752 0.90846 0.92057 0.76548 0.89118 0.89106 0.92140 0.91702 0.90744 0.90986 0.74916 0.80687 0.80179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 9.00 37.16 0.33 -1.09 16 2 C 0.14 1.26 2.62 -67.93 -0.18 1.08 16 3 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 4 N -0.73 -7.83 4.99 -53.81 -0.27 -8.10 16 5 C 0.53 8.85 7.81 -10.98 -0.09 8.77 16 6 O -0.51 -10.63 15.52 5.56 0.09 -10.54 16 7 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 8 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 9 C -0.54 -14.83 9.50 30.94 0.29 -14.54 16 10 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 11 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 12 N -0.87 -25.65 13.22 55.49 0.73 -24.92 16 13 Si 0.92 20.95 29.55 -169.99 -5.02 15.92 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 C 0.14 0.86 2.31 -67.93 -0.16 0.70 16 18 H 0.09 0.54 6.47 -51.93 -0.34 0.20 16 19 C -0.18 -0.87 8.94 37.16 0.33 -0.54 16 20 N -0.70 -4.64 5.16 -53.81 -0.28 -4.92 16 21 C 0.35 2.89 7.65 -154.62 -1.18 1.71 16 22 C 0.03 0.24 10.01 -17.12 -0.17 0.06 16 23 N -0.43 -4.39 10.50 -13.24 -0.14 -4.53 16 24 C 0.18 1.69 8.43 -17.22 -0.15 1.55 16 25 F -0.11 -1.05 17.29 2.25 0.04 -1.01 16 26 C 0.10 0.75 11.20 -17.30 -0.19 0.56 16 27 N -0.48 -4.20 10.53 -12.16 -0.13 -4.33 16 28 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.41 6.29 -51.93 -0.33 0.08 16 31 H 0.40 3.10 6.58 -40.82 -0.27 2.83 16 32 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 33 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.06 0.31 7.69 -51.93 -0.40 -0.09 16 36 H 0.07 0.31 6.29 -51.93 -0.33 -0.02 16 37 H 0.07 0.37 6.57 -51.93 -0.34 0.03 16 38 H 0.41 2.62 6.70 -40.82 -0.27 2.35 16 39 H 0.18 1.06 6.10 -52.49 -0.32 0.74 16 40 H 0.18 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -34.65 353.21 -7.46 -42.11 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.56 Total: 1.17 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -1.03 Total: -2.42 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.08 Total: -46.79 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.04 Total: -1.01 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.65 -7.46 -42.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112911718.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.793 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds