Wall clock time and date at job start Tue Mar 31 2020 16:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 S 1.81003 * 109.46853 * 179.97438 * 7 5 4 9 9 C 1.76196 * 99.99846 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00030 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99637 * 180.02562 * 9 8 7 12 12 N 1.31628 * 120.00513 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99570 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46946 * 90.00549 * 13 11 9 15 15 H 1.48504 * 109.46826 * 210.00017 * 13 11 9 16 16 H 1.48496 * 109.47486 * 329.99998 * 13 11 9 17 17 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 18 18 H 1.08995 * 109.47217 * 174.99856 * 17 2 1 19 19 C 1.52999 * 109.47085 * 294.99996 * 17 2 1 20 20 N 1.46498 * 109.47082 * 54.99895 * 17 2 1 21 21 C 1.39160 * 120.00261 * 154.99998 * 20 17 2 22 22 C 1.39211 * 120.05570 * 0.02562 * 21 20 17 23 23 N 1.32001 * 119.92760 * 180.02562 * 22 21 20 24 24 C 1.32408 * 120.05990 * 359.97438 * 23 22 21 25 25 F 1.35100 * 119.94020 * 180.02562 * 24 23 22 26 26 C 1.38463 * 120.12021 * 359.97438 * 24 23 22 27 27 N 1.32219 * 120.06959 * 359.72667 * 26 24 23 28 28 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 30 30 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 31 31 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 32 32 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 33 33 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 34 34 H 0.96995 * 120.00407 * 180.02562 * 12 11 9 35 35 H 1.09001 * 109.47298 * 179.97438 * 19 17 2 36 36 H 1.09000 * 109.47061 * 300.00140 * 19 17 2 37 37 H 1.09007 * 109.47030 * 60.00202 * 19 17 2 38 38 H 0.97003 * 120.00299 * 335.00732 * 20 17 2 39 39 H 1.07999 * 120.03881 * 359.97433 * 22 21 20 40 40 H 1.07999 * 119.96939 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 16 2.7105 0.4346 4.9731 9 6 3.3121 -0.6309 6.2408 10 1 3.5201 -1.6677 6.0212 11 6 3.5178 -0.1380 7.5220 12 7 3.2629 1.1252 7.7900 13 14 4.1550 -1.2680 8.8662 14 1 5.6395 -1.2306 8.8817 15 1 3.6347 -0.8151 10.1813 16 1 3.6974 -2.6562 8.6042 17 6 2.0400 -0.7213 -1.2492 18 1 3.1263 -0.6443 -1.2951 19 6 1.6353 -2.1955 -1.1879 20 7 1.4559 -0.1037 -2.4423 21 6 2.1119 -0.1968 -3.6661 22 6 3.3231 -0.8769 -3.7579 23 7 3.9435 -0.9631 -4.9199 24 6 3.4145 -0.4040 -5.9973 25 9 4.0512 -0.4943 -7.1854 26 6 2.2094 0.2720 -5.9087 27 7 1.5808 0.3564 -4.7485 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2490 -1.6316 1.1527 32 1 1.9759 -1.5504 3.8327 33 1 3.6480 -1.1212 3.3986 34 1 3.4070 1.4697 8.6852 35 1 1.9982 -2.7093 -2.0780 36 1 2.0699 -2.6549 -0.3001 37 1 0.5489 -2.2724 -1.1420 38 1 0.6118 0.3702 -2.3794 39 1 3.7551 -1.3327 -2.8793 40 1 1.7803 0.7275 -6.7889 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112911718.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:45 Heat of formation + Delta-G solvation = -46.193837 kcal Electronic energy + Delta-G solvation = -24378.875686 eV Core-core repulsion = 20462.055581 eV Total energy + Delta-G solvation = -3916.820105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -49.95665 -42.14720 -40.94397 -38.86131 -36.03110 -35.16679 -34.56898 -32.90642 -30.99609 -30.00603 -29.58139 -27.64420 -26.22179 -25.73454 -24.40816 -22.15616 -21.05194 -20.00020 -19.59160 -19.07143 -18.43689 -17.94931 -17.33670 -17.17013 -16.86501 -16.63025 -16.23506 -16.07309 -15.89595 -15.45716 -15.18108 -15.00312 -14.74242 -14.62911 -14.43558 -14.19427 -13.80822 -13.30710 -13.21461 -13.14663 -12.88227 -12.79898 -12.78250 -12.58170 -12.55883 -12.15973 -11.95763 -11.70944 -11.23423 -11.13065 -10.94727 -10.36458 -10.24800 -10.17439 -8.92778 -8.64401 -8.33489 -6.10803 -0.28423 -0.01360 1.26195 1.43315 1.45220 1.55056 1.62242 1.73826 2.28087 2.36475 2.47827 2.52540 3.00915 3.17453 3.32885 3.35348 3.45601 3.70194 3.78792 3.97812 4.03651 4.08898 4.31633 4.36237 4.39568 4.47893 4.55296 4.68149 4.73103 4.86178 4.95173 5.15161 5.21914 5.42048 5.43502 5.44284 5.56047 6.19518 6.21211 6.23395 6.49889 6.70704 7.08317 7.26048 8.75454 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.028928 B = 0.001938 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.690300 B =14446.976465 C =14807.726486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 H 0.073 0.927 4 N -0.704 5.704 5 C 0.538 3.462 6 O -0.562 6.562 7 C -0.131 4.131 8 S -0.153 6.153 9 C -0.544 4.544 10 H 0.084 0.916 11 C 0.012 3.988 12 N -0.911 5.911 13 Si 0.997 3.003 14 H -0.269 1.269 15 H -0.280 1.280 16 H -0.257 1.257 17 C 0.149 3.851 18 H 0.103 0.897 19 C -0.175 4.175 20 N -0.692 5.692 21 C 0.354 3.646 22 C 0.026 3.974 23 N -0.455 5.455 24 C 0.161 3.839 25 F -0.116 7.116 26 C 0.109 3.891 27 N -0.496 5.496 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.417 0.583 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.270 0.730 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.414 0.586 39 H 0.196 0.804 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.998 -9.121 -26.241 28.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.091 0.909 4 N -0.361 5.361 5 C 0.324 3.676 6 O -0.439 6.439 7 C -0.282 4.282 8 S 0.074 5.926 9 C -0.692 4.692 10 H 0.102 0.898 11 C -0.193 4.193 12 N -0.548 5.548 13 Si 0.819 3.181 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.181 1.181 17 C 0.043 3.957 18 H 0.120 0.880 19 C -0.233 4.233 20 N -0.326 5.326 21 C 0.113 3.887 22 C -0.144 4.144 23 N -0.173 5.173 24 C 0.005 3.995 25 F -0.096 7.096 26 C -0.053 4.053 27 N -0.218 5.218 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.257 0.743 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.253 0.747 39 H 0.212 0.788 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.387 -7.134 -25.955 27.273 hybrid contribution 0.636 -1.621 0.704 1.878 sum -3.752 -8.755 -25.251 26.988 Atomic orbital electron populations 1.22233 0.94252 1.03621 1.02253 1.20965 0.95181 0.96854 0.83468 0.90890 1.45748 1.67884 1.14630 1.07833 1.20023 0.76508 0.86512 0.84573 1.90709 1.50355 1.17773 1.85092 1.23385 1.05747 1.03194 0.95862 1.85602 1.86751 1.17329 1.02933 1.23208 1.50755 0.98483 0.96763 0.89771 1.26117 0.95160 0.97169 1.00808 1.70178 1.46876 1.15492 1.22258 0.84974 0.78473 0.78300 0.76364 1.19402 1.20527 1.18086 1.21225 0.99206 0.93411 0.81843 0.87953 1.22416 1.03668 0.93422 1.03821 1.44608 1.25649 1.59120 1.03211 1.19463 0.90369 0.91281 0.87570 1.23288 0.93029 1.02433 0.95605 1.67540 1.33874 1.16630 0.99276 1.18999 0.93771 1.04235 0.82533 1.91601 1.82178 1.94829 1.40986 1.23690 0.90041 0.94558 0.97053 1.68088 1.33743 1.21668 0.98288 0.89933 0.94125 0.90092 0.74308 0.87035 0.86956 0.92077 0.91009 0.89476 0.90781 0.74669 0.78764 0.77280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 9.00 71.98 0.65 -1.89 16 2 C 0.14 2.29 2.62 44.99 0.12 2.41 16 3 H 0.07 1.62 7.58 -2.39 -0.02 1.60 16 4 N -0.70 -13.53 4.99 -442.54 -2.21 -15.74 16 5 C 0.54 17.41 7.81 87.66 0.68 18.10 16 6 O -0.56 -23.83 15.52 -3.03 -0.05 -23.88 16 7 C -0.13 -4.70 6.16 71.24 0.44 -4.26 16 8 S -0.15 -8.18 20.57 -56.49 -1.16 -9.34 16 9 C -0.54 -30.10 9.50 67.96 0.65 -29.45 16 10 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 11 C 0.01 0.68 5.49 84.86 0.47 1.14 16 12 N -0.91 -55.13 13.22 21.65 0.29 -54.84 16 13 Si 1.00 42.62 29.55 68.60 2.03 44.65 16 14 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 15 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 16 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 17 C 0.15 1.43 2.31 44.99 0.10 1.53 16 18 H 0.10 0.87 6.47 -2.39 -0.02 0.85 16 19 C -0.18 -1.08 8.94 71.98 0.64 -0.44 16 20 N -0.69 -7.61 5.16 -324.16 -1.67 -9.28 16 21 C 0.35 5.08 7.65 132.95 1.02 6.10 16 22 C 0.03 0.38 10.01 84.90 0.85 1.23 16 23 N -0.45 -8.82 10.50 -195.82 -2.06 -10.88 16 24 C 0.16 2.86 8.43 84.66 0.71 3.58 16 25 F -0.12 -2.17 17.29 44.97 0.78 -1.39 16 26 C 0.11 1.49 11.20 84.69 0.95 2.44 16 27 N -0.50 -7.81 10.53 -192.40 -2.03 -9.84 16 28 H 0.08 0.97 6.57 -2.39 -0.02 0.96 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.92 6.29 -2.39 -0.02 0.91 16 31 H 0.42 4.99 6.58 -92.71 -0.61 4.38 16 32 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 33 H 0.11 3.56 8.14 -2.40 -0.02 3.54 16 34 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.07 0.42 7.69 -2.39 -0.02 0.40 16 36 H 0.09 0.34 6.29 -2.39 -0.02 0.32 16 37 H 0.07 0.48 6.57 -2.38 -0.02 0.46 16 38 H 0.41 4.35 6.70 -92.71 -0.62 3.73 16 39 H 0.20 1.84 6.10 -2.91 -0.02 1.82 16 40 H 0.21 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -78.61 353.21 1.08 -77.53 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -0.12 Total: 12.51 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 7.28 Total: 0.49 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -7.68 Total: -100.57 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.78 Total: -1.39 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.16 Total: -9.34 kcal Total: -78.61 1.08 -77.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112911718.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.333 kcal (2) G-P(sol) polarization free energy of solvation -78.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds