Wall clock time and date at job start Tue Mar 31 2020 16:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.46987 * 2 1 4 4 N 1.46495 * 109.47502 * 120.00493 * 2 1 3 5 5 C 1.34781 * 120.00149 * 274.99901 * 4 2 1 6 6 O 1.21278 * 119.99589 * 359.97438 * 5 4 2 7 7 C 1.50690 * 120.00137 * 179.97438 * 5 4 2 8 8 S 1.81007 * 109.46970 * 180.02562 * 7 5 4 9 9 C 1.76208 * 99.99938 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99622 * 359.97438 * 9 8 7 11 11 C 1.38792 * 120.00012 * 180.02562 * 9 8 7 12 12 N 1.31636 * 120.00192 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00351 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47105 * 89.99506 * 13 11 9 15 15 H 1.48498 * 109.47602 * 210.00125 * 13 11 9 16 16 H 1.48503 * 109.46908 * 329.99992 * 13 11 9 17 17 C 1.53004 * 109.47080 * 240.00612 * 2 1 3 18 18 H 1.08997 * 109.47464 * 174.99755 * 17 2 1 19 19 C 1.53005 * 109.46950 * 294.99749 * 17 2 1 20 20 N 1.46501 * 109.47198 * 54.99256 * 17 2 1 21 21 C 1.39123 * 119.99551 * 154.99801 * 20 17 2 22 22 N 1.32557 * 120.11071 * 359.97438 * 21 20 17 23 23 C 1.32313 * 119.94358 * 180.02562 * 22 21 20 24 24 C 1.38064 * 120.16452 * 359.97438 * 23 22 21 25 25 N 1.32354 * 120.21924 * 0.02562 * 24 23 22 26 26 C 1.32066 * 120.05744 * 0.02562 * 25 24 23 27 27 F 1.35096 * 120.08422 * 180.02562 * 26 25 24 28 28 H 1.08996 * 109.47652 * 59.99414 * 1 2 3 29 29 H 1.09007 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47273 * 299.99245 * 1 2 3 31 31 H 0.96997 * 120.00431 * 94.99756 * 4 2 1 32 32 H 1.08999 * 109.47861 * 300.00027 * 7 5 4 33 33 H 1.09000 * 109.47302 * 60.00672 * 7 5 4 34 34 H 0.97002 * 120.00308 * 180.02562 * 12 11 9 35 35 H 1.08998 * 109.47464 * 180.02562 * 19 17 2 36 36 H 1.09001 * 109.46858 * 300.00058 * 19 17 2 37 37 H 1.08997 * 109.47032 * 59.99741 * 19 17 2 38 38 H 0.96996 * 120.00222 * 335.00875 * 20 17 2 39 39 H 1.07991 * 119.91927 * 180.02562 * 23 22 21 40 40 H 1.07995 * 119.88791 * 180.28255 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1472 -0.0184 2.3571 6 8 1.8591 1.1584 2.4115 7 6 2.6490 -0.7290 3.5875 8 16 2.7094 0.4338 4.9734 9 6 3.3128 -0.6315 6.2406 10 1 3.5221 -1.6679 6.0204 11 6 3.5181 -0.1389 7.5218 12 7 3.2625 1.1242 7.7902 13 14 4.1571 -1.2683 8.8655 14 1 5.6415 -1.2291 8.8806 15 1 3.6365 -0.8168 10.1809 16 1 3.7013 -2.6571 8.6030 17 6 2.0399 -0.7211 -1.2493 18 1 3.1262 -0.6442 -1.2953 19 6 1.6352 -2.1954 -1.1882 20 7 1.4557 -0.1035 -2.4424 21 6 2.1116 -0.1964 -3.6658 22 7 3.2655 -0.8428 -3.7543 23 6 3.8867 -0.9287 -4.9193 24 6 3.3359 -0.3472 -6.0438 25 7 2.1840 0.2998 -5.9629 26 6 1.5570 0.3917 -4.8042 27 9 0.3811 1.0515 -4.7211 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 2.2491 -1.6318 1.1525 32 1 1.9762 -1.5509 3.8325 33 1 3.6482 -1.1214 3.3984 34 1 3.4063 1.4685 8.6856 35 1 1.9989 -2.7093 -2.0779 36 1 2.0699 -2.6549 -0.3005 37 1 0.5489 -2.2723 -1.1422 38 1 0.6116 0.3703 -2.3794 39 1 4.8266 -1.4558 -4.9910 40 1 3.8445 -0.4239 -6.9934 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112963164.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:05 Heat of formation + Delta-G solvation = -21.806553 kcal Electronic energy + Delta-G solvation = -24653.213119 eV Core-core repulsion = 20737.450525 eV Total energy + Delta-G solvation = -3915.762593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.39314 -41.38386 -39.78589 -37.91547 -35.27799 -33.96794 -32.45110 -32.03650 -30.20712 -29.35182 -28.48526 -25.56425 -25.46604 -24.64222 -23.88572 -20.98058 -20.04918 -19.15350 -18.40526 -17.99617 -17.87312 -16.79538 -16.57270 -16.11110 -15.55248 -15.47900 -14.88855 -14.82292 -14.75875 -14.48405 -14.42454 -14.02971 -13.64646 -13.57823 -13.25358 -13.00237 -12.61048 -12.55014 -12.13198 -12.07566 -12.02489 -11.91007 -11.25543 -11.14119 -11.08098 -11.04592 -10.78323 -10.54975 -9.84407 -9.71250 -9.47130 -9.10155 -9.02876 -8.33055 -8.26755 -6.52783 -6.23884 -3.94759 0.32667 0.67993 2.30865 2.97361 3.01725 3.07401 3.17319 3.20799 3.26468 3.30232 3.62541 3.74944 3.85422 4.18115 4.26817 4.56291 4.59221 4.70725 4.84783 5.01211 5.04640 5.11178 5.12312 5.17669 5.34288 5.44347 5.50006 5.59952 5.71971 5.78569 5.84552 5.89423 6.09843 6.13211 6.38932 6.48354 6.54808 6.94314 7.36369 7.57186 7.60807 8.32929 8.53485 9.21488 10.83483 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.002060 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.946631 B =13586.526795 C =13963.575245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.137 3.863 3 H 0.094 0.906 4 N -0.731 5.731 5 C 0.534 3.466 6 O -0.514 6.514 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.146 3.854 18 H 0.100 0.900 19 C -0.167 4.167 20 N -0.699 5.699 21 C 0.357 3.643 22 N -0.477 5.477 23 C 0.099 3.901 24 C 0.009 3.991 25 N -0.431 5.431 26 C 0.195 3.805 27 F -0.108 7.108 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.398 0.602 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.268 0.732 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.415 0.585 39 H 0.179 0.821 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 -7.723 -26.750 27.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.031 3.969 3 H 0.112 0.888 4 N -0.388 5.388 5 C 0.321 3.679 6 O -0.388 6.388 7 C -0.304 4.304 8 S 0.167 5.833 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 C 0.040 3.960 18 H 0.118 0.882 19 C -0.225 4.225 20 N -0.334 5.334 21 C 0.114 3.886 22 N -0.200 5.200 23 C -0.062 4.062 24 C -0.151 4.151 25 N -0.150 5.150 26 C 0.029 3.971 27 F -0.088 7.088 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.234 0.766 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.256 0.744 39 H 0.196 0.804 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.029 -5.662 -26.326 27.004 hybrid contribution 0.301 -2.205 0.703 2.334 sum -1.729 -7.867 -25.623 26.859 Atomic orbital electron populations 1.22274 0.95207 1.02584 1.02677 1.20965 0.94474 0.97809 0.83679 0.88753 1.46069 1.69672 1.13994 1.09070 1.20339 0.76697 0.87220 0.83676 1.90707 1.48041 1.15717 1.84331 1.23532 1.03729 1.04910 0.98250 1.85412 1.86308 1.12852 0.98736 1.22862 1.51027 0.98158 0.96334 0.90905 1.24997 0.95087 0.95564 0.97973 1.70018 1.45436 1.13244 1.21568 0.86162 0.79010 0.80170 0.80121 1.20257 1.20754 1.19696 1.21163 0.99526 0.92470 0.82805 0.88250 1.22264 1.02291 0.95337 1.02633 1.44753 1.25226 1.59137 1.04243 1.19082 0.90595 0.92325 0.86566 1.68139 1.06377 1.18076 1.27415 1.23586 0.99611 0.95526 0.87429 1.23202 0.92195 0.98741 1.01001 1.67599 1.08814 1.14097 1.24465 1.18392 0.86876 1.01239 0.90551 1.91619 1.42639 1.78391 1.96102 0.92288 0.91761 0.90873 0.76558 0.89151 0.89132 0.92166 0.91718 0.91245 0.91758 0.74449 0.80434 0.80693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.00 37.15 0.33 -1.30 16 2 C 0.14 1.45 2.62 -67.93 -0.18 1.27 16 3 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 4 N -0.73 -8.87 4.99 -53.81 -0.27 -9.14 16 5 C 0.53 9.41 7.81 -10.99 -0.09 9.32 16 6 O -0.51 -11.14 15.52 5.56 0.09 -11.05 16 7 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 8 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 9 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 10 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 11 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 12 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 13 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 C 0.15 1.23 2.64 -67.93 -0.18 1.06 16 18 H 0.10 0.95 7.56 -51.93 -0.39 0.56 16 19 C -0.17 -1.20 9.02 37.16 0.34 -0.87 16 20 N -0.70 -5.78 5.14 -53.72 -0.28 -6.06 16 21 C 0.36 3.30 7.48 -154.58 -1.16 2.15 16 22 N -0.48 -4.14 9.38 -12.17 -0.11 -4.25 16 23 C 0.10 0.59 11.21 -17.41 -0.20 0.40 16 24 C 0.01 0.05 11.21 -17.39 -0.19 -0.14 16 25 N -0.43 -4.19 10.50 -13.24 -0.14 -4.33 16 26 C 0.20 1.95 8.47 -16.93 -0.14 1.81 16 27 F -0.11 -1.10 16.68 2.25 0.04 -1.07 16 28 H 0.06 0.45 6.29 -51.93 -0.33 0.12 16 29 H 0.06 0.55 6.56 -51.93 -0.34 0.20 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.40 3.75 6.58 -40.82 -0.27 3.48 16 32 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 33 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.44 6.29 -51.93 -0.33 0.12 16 37 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 38 H 0.42 3.08 6.07 -40.82 -0.25 2.83 16 39 H 0.18 0.43 8.06 -52.49 -0.42 0.01 16 40 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -35.27 355.75 -7.58 -42.84 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.72 Total: 2.37 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.04 Total: -1.83 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.06 Total: -49.00 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.27 -7.58 -42.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112963164.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.036 kcal (2) G-P(sol) polarization free energy of solvation -35.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds