Wall clock time and date at job start Tue Mar 31 2020 16:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.46987 * 2 1 4 4 N 1.46495 * 109.47502 * 120.00493 * 2 1 3 5 5 C 1.34781 * 120.00149 * 274.99901 * 4 2 1 6 6 O 1.21278 * 119.99589 * 359.97438 * 5 4 2 7 7 C 1.50690 * 120.00137 * 179.97438 * 5 4 2 8 8 S 1.81007 * 109.46970 * 180.02562 * 7 5 4 9 9 C 1.76208 * 99.99938 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99622 * 359.97438 * 9 8 7 11 11 C 1.38792 * 120.00012 * 180.02562 * 9 8 7 12 12 N 1.31636 * 120.00192 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00351 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47105 * 89.99506 * 13 11 9 15 15 H 1.48498 * 109.47602 * 210.00125 * 13 11 9 16 16 H 1.48503 * 109.46908 * 329.99992 * 13 11 9 17 17 C 1.53004 * 109.47080 * 240.00612 * 2 1 3 18 18 H 1.08997 * 109.47464 * 174.99755 * 17 2 1 19 19 C 1.53005 * 109.46950 * 294.99749 * 17 2 1 20 20 N 1.46501 * 109.47198 * 54.99256 * 17 2 1 21 21 C 1.39123 * 119.99551 * 154.99801 * 20 17 2 22 22 N 1.32557 * 120.11071 * 359.97438 * 21 20 17 23 23 C 1.32313 * 119.94358 * 180.02562 * 22 21 20 24 24 C 1.38064 * 120.16452 * 359.97438 * 23 22 21 25 25 N 1.32354 * 120.21924 * 0.02562 * 24 23 22 26 26 C 1.32066 * 120.05744 * 0.02562 * 25 24 23 27 27 F 1.35096 * 120.08422 * 180.02562 * 26 25 24 28 28 H 1.08996 * 109.47652 * 59.99414 * 1 2 3 29 29 H 1.09007 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47273 * 299.99245 * 1 2 3 31 31 H 0.96997 * 120.00431 * 94.99756 * 4 2 1 32 32 H 1.08999 * 109.47861 * 300.00027 * 7 5 4 33 33 H 1.09000 * 109.47302 * 60.00672 * 7 5 4 34 34 H 0.97002 * 120.00308 * 180.02562 * 12 11 9 35 35 H 1.08998 * 109.47464 * 180.02562 * 19 17 2 36 36 H 1.09001 * 109.46858 * 300.00058 * 19 17 2 37 37 H 1.08997 * 109.47032 * 59.99741 * 19 17 2 38 38 H 0.96996 * 120.00222 * 335.00875 * 20 17 2 39 39 H 1.07991 * 119.91927 * 180.02562 * 23 22 21 40 40 H 1.07995 * 119.88791 * 180.28255 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1472 -0.0184 2.3571 6 8 1.8591 1.1584 2.4115 7 6 2.6490 -0.7290 3.5875 8 16 2.7094 0.4338 4.9734 9 6 3.3128 -0.6315 6.2406 10 1 3.5221 -1.6679 6.0204 11 6 3.5181 -0.1389 7.5218 12 7 3.2625 1.1242 7.7902 13 14 4.1571 -1.2683 8.8655 14 1 5.6415 -1.2291 8.8806 15 1 3.6365 -0.8168 10.1809 16 1 3.7013 -2.6571 8.6030 17 6 2.0399 -0.7211 -1.2493 18 1 3.1262 -0.6442 -1.2953 19 6 1.6352 -2.1954 -1.1882 20 7 1.4557 -0.1035 -2.4424 21 6 2.1116 -0.1964 -3.6658 22 7 3.2655 -0.8428 -3.7543 23 6 3.8867 -0.9287 -4.9193 24 6 3.3359 -0.3472 -6.0438 25 7 2.1840 0.2998 -5.9629 26 6 1.5570 0.3917 -4.8042 27 9 0.3811 1.0515 -4.7211 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 2.2491 -1.6318 1.1525 32 1 1.9762 -1.5509 3.8325 33 1 3.6482 -1.1214 3.3984 34 1 3.4063 1.4685 8.6856 35 1 1.9989 -2.7093 -2.0779 36 1 2.0699 -2.6549 -0.3005 37 1 0.5489 -2.2723 -1.1422 38 1 0.6116 0.3703 -2.3794 39 1 4.8266 -1.4558 -4.9910 40 1 3.8445 -0.4239 -6.9934 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112963164.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:04 Heat of formation + Delta-G solvation = -47.909988 kcal Electronic energy + Delta-G solvation = -24654.345048 eV Core-core repulsion = 20737.450525 eV Total energy + Delta-G solvation = -3916.894523 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.08259 -41.98497 -40.96993 -38.88416 -36.16444 -34.70606 -34.57427 -33.01569 -31.19245 -29.97491 -29.70568 -27.65439 -26.17069 -25.32243 -24.59624 -22.11541 -21.03692 -20.04066 -19.62593 -19.04794 -18.60028 -17.97776 -17.48036 -17.14956 -16.87203 -16.55425 -16.15561 -15.98729 -15.92987 -15.45408 -15.16830 -15.03614 -14.78542 -14.50653 -14.24297 -14.21568 -13.88957 -13.35967 -13.28744 -13.15806 -12.88904 -12.88283 -12.68839 -12.65361 -12.58876 -12.02511 -11.94326 -11.71801 -11.19260 -11.13673 -10.97460 -10.29691 -10.26406 -10.20174 -8.93975 -8.65805 -8.34105 -6.11927 -0.25040 0.08888 1.25204 1.43025 1.44898 1.55098 1.59839 1.74065 2.26946 2.31256 2.46855 2.60968 3.00162 3.22787 3.24054 3.32610 3.47223 3.79831 3.95346 4.03777 4.09865 4.27065 4.32109 4.36751 4.45007 4.52689 4.53909 4.65412 4.74256 4.90169 4.90771 5.11623 5.23040 5.38779 5.42243 5.42996 5.80144 5.89148 6.20522 6.36005 6.46757 6.77286 7.07400 7.22768 8.74961 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.002060 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.946631 B =13586.526795 C =13963.575245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.069 0.931 4 N -0.704 5.704 5 C 0.537 3.463 6 O -0.562 6.562 7 C -0.130 4.130 8 S -0.152 6.152 9 C -0.545 4.545 10 H 0.084 0.916 11 C 0.012 3.988 12 N -0.912 5.912 13 Si 0.998 3.002 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.257 1.257 17 C 0.160 3.840 18 H 0.092 0.908 19 C -0.162 4.162 20 N -0.699 5.699 21 C 0.348 3.652 22 N -0.491 5.491 23 C 0.108 3.892 24 C 0.015 3.985 25 N -0.457 5.457 26 C 0.167 3.833 27 F -0.119 7.119 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.416 0.584 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.271 0.729 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.417 0.583 39 H 0.219 0.781 40 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -10.750 -28.149 30.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 H 0.087 0.913 4 N -0.361 5.361 5 C 0.323 3.677 6 O -0.440 6.440 7 C -0.281 4.281 8 S 0.075 5.925 9 C -0.692 4.692 10 H 0.102 0.898 11 C -0.193 4.193 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.181 1.181 17 C 0.054 3.946 18 H 0.110 0.890 19 C -0.220 4.220 20 N -0.335 5.335 21 C 0.107 3.893 22 N -0.215 5.215 23 C -0.053 4.053 24 C -0.145 4.145 25 N -0.177 5.177 26 C 0.003 3.997 27 F -0.098 7.098 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.255 0.745 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.258 0.742 39 H 0.235 0.765 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -0.854 -8.727 -27.760 29.112 hybrid contribution 0.002 -1.310 0.903 1.591 sum -0.852 -10.037 -26.857 28.684 Atomic orbital electron populations 1.22225 0.94173 1.03616 1.02251 1.21013 0.95196 0.96713 0.83773 0.91289 1.45765 1.67831 1.14590 1.07892 1.20057 0.76520 0.86542 0.84550 1.90701 1.50431 1.17726 1.85108 1.23373 1.05686 1.03213 0.95820 1.85605 1.86705 1.17374 1.02854 1.23206 1.50772 0.98506 0.96749 0.89788 1.26135 0.95134 0.97209 1.00806 1.70187 1.46861 1.15521 1.22262 0.84953 0.78487 0.78246 0.76293 1.19333 1.20455 1.18097 1.20954 0.98887 0.93045 0.81669 0.89044 1.22241 1.02747 0.93918 1.03142 1.44682 1.25322 1.59464 1.03999 1.19075 0.90998 0.92756 0.86457 1.68207 1.06230 1.18227 1.28808 1.24300 1.00280 0.94322 0.86376 1.23896 0.90995 0.96964 1.02694 1.67617 1.10226 1.15162 1.24659 1.18494 0.87287 1.02746 0.91195 1.91578 1.43262 1.78787 1.96202 0.90273 0.89932 0.93826 0.74460 0.87010 0.87035 0.92049 0.91763 0.90100 0.91173 0.74222 0.76493 0.77158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.00 71.98 0.65 -2.40 16 2 C 0.14 2.84 2.62 44.99 0.12 2.96 16 3 H 0.07 1.83 7.58 -2.39 -0.02 1.81 16 4 N -0.70 -16.10 4.99 -442.56 -2.21 -18.31 16 5 C 0.54 18.79 7.81 87.65 0.68 19.47 16 6 O -0.56 -25.14 15.52 -3.02 -0.05 -25.19 16 7 C -0.13 -4.91 6.16 71.23 0.44 -4.48 16 8 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 9 C -0.54 -30.63 9.50 67.95 0.65 -29.99 16 10 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 11 C 0.01 0.67 5.49 84.85 0.47 1.13 16 12 N -0.91 -55.75 13.22 21.65 0.29 -55.47 16 13 Si 1.00 43.13 29.55 68.60 2.03 45.16 16 14 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 15 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 17 C 0.16 2.48 2.64 44.99 0.12 2.60 16 18 H 0.09 1.61 7.56 -2.39 -0.02 1.59 16 19 C -0.16 -1.91 9.02 71.98 0.65 -1.27 16 20 N -0.70 -11.04 5.14 -323.88 -1.66 -12.70 16 21 C 0.35 6.15 7.48 133.09 1.00 7.14 16 22 N -0.49 -7.56 9.38 -192.42 -1.80 -9.36 16 23 C 0.11 0.97 11.21 84.58 0.95 1.92 16 24 C 0.02 0.16 11.21 84.57 0.95 1.10 16 25 N -0.46 -8.43 10.50 -195.80 -2.06 -10.49 16 26 C 0.17 3.29 8.47 84.99 0.72 4.01 16 27 F -0.12 -2.50 16.68 44.97 0.75 -1.75 16 28 H 0.08 1.15 6.29 -2.39 -0.02 1.13 16 29 H 0.08 1.23 6.56 -2.38 -0.02 1.22 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.42 6.66 6.58 -92.71 -0.61 6.05 16 32 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 33 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 34 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.76 6.29 -2.39 -0.02 0.74 16 37 H 0.07 0.77 6.56 -2.39 -0.02 0.76 16 38 H 0.42 6.02 6.07 -92.71 -0.56 5.46 16 39 H 0.22 0.07 8.06 -2.92 -0.02 0.05 16 40 H 0.21 0.43 8.06 -2.91 -0.02 0.41 16 Total: -1.00 -80.50 355.75 1.43 -79.07 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -0.07 Total: 16.32 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 7.38 Total: 2.21 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -7.45 Total: -106.33 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.05 Total: -25.19 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.75 Total: -1.75 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -80.50 1.43 -79.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112963164.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.156 kcal (2) G-P(sol) polarization free energy of solvation -80.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds