Wall clock time and date at job start Tue Mar 31 2020 16:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 N 1.46496 * 109.47535 * 185.00041 * 4 2 1 6 6 C 1.46501 * 120.00066 * 269.99923 * 5 4 2 7 7 C 1.34776 * 120.00052 * 90.00363 * 5 4 2 8 8 O 1.21284 * 119.99930 * 359.97438 * 7 5 4 9 9 C 1.50707 * 120.00234 * 180.02562 * 7 5 4 10 10 S 1.80991 * 109.47157 * 179.97438 * 9 7 5 11 11 C 1.76199 * 100.00020 * 179.97438 * 10 9 7 12 12 H 1.07995 * 119.99595 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99831 * 179.97438 * 11 10 9 14 14 N 1.31632 * 120.00615 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99723 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47339 * 90.00284 * 15 13 11 17 17 H 1.48504 * 109.47121 * 210.00135 * 15 13 11 18 18 H 1.48496 * 109.47194 * 329.99908 * 15 13 11 19 19 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 20 20 C 1.38565 * 119.99807 * 275.00125 * 19 2 1 21 21 C 1.39466 * 120.51652 * 359.71536 * 20 19 2 22 22 C 1.38470 * 118.31101 * 179.78433 * 21 20 19 23 23 F 1.35100 * 120.42959 * 180.26535 * 22 21 20 24 24 N 1.32786 * 119.13620 * 0.49162 * 22 21 20 25 25 C 1.31755 * 120.96956 * 359.74930 * 24 22 21 26 26 N 1.31767 * 121.85680 * 0.02562 * 25 24 22 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 31 31 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 32 32 H 1.09000 * 109.46659 * 90.00215 * 6 5 4 33 33 H 1.08996 * 109.47038 * 209.99571 * 6 5 4 34 34 H 1.08991 * 109.47465 * 330.00175 * 6 5 4 35 35 H 1.09005 * 109.46639 * 299.99775 * 9 7 5 36 36 H 1.08999 * 109.46919 * 59.99714 * 9 7 5 37 37 H 0.96996 * 120.00122 * 179.97438 * 14 13 11 38 38 H 0.97000 * 120.00117 * 94.99845 * 19 2 1 39 39 H 1.07994 * 120.84065 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.07559 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.3343 0.2339 -1.7613 7 6 4.0757 -1.8988 -0.6116 8 8 3.3850 -2.7764 -0.1387 9 6 5.5777 -2.0067 -0.5507 10 16 6.0387 -3.5467 0.2810 11 6 7.7946 -3.4172 0.2133 12 1 8.2551 -2.5571 -0.2498 13 6 8.5858 -4.4201 0.7561 14 7 8.0245 -5.4682 1.3211 15 14 10.4474 -4.2824 0.6850 16 1 10.9386 -3.5809 1.8981 17 1 11.0423 -5.6418 0.6244 18 1 10.8412 -3.5154 -0.5240 19 7 2.0184 -0.6906 1.1962 20 6 2.1507 0.0007 2.3898 21 6 1.8277 1.3554 2.4631 22 6 1.9728 2.0002 3.6799 23 9 1.6672 3.3107 3.8006 24 7 2.4205 1.3149 4.7254 25 6 2.7213 0.0365 4.6197 26 7 2.5937 -0.6162 3.4822 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6054 -1.7198 -1.2952 31 1 1.7517 -0.1584 -2.1369 32 1 4.5400 0.9846 -0.9983 33 1 5.2734 -0.1927 -2.1137 34 1 3.8103 0.6987 -2.5964 35 1 5.9833 -2.0042 -1.5625 36 1 5.9806 -1.1596 0.0044 37 1 8.5775 -6.1691 1.7001 38 1 2.2491 -1.6318 1.1527 39 1 1.4697 1.8871 1.5939 40 1 3.0833 -0.4912 5.4897 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115629971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:30 Heat of formation + Delta-G solvation = -18.541836 kcal Electronic energy + Delta-G solvation = -25607.786134 eV Core-core repulsion = 21692.165109 eV Total energy + Delta-G solvation = -3915.621025 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.111 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -49.26471 -40.97665 -39.87243 -37.35130 -35.35457 -33.45814 -32.45165 -31.97656 -30.05873 -29.56270 -27.44218 -25.77726 -25.32379 -24.72505 -23.60644 -21.50732 -19.53441 -18.83849 -18.26271 -17.70735 -16.84063 -16.41222 -16.31847 -16.08936 -15.98534 -15.51052 -14.89532 -14.82385 -14.69320 -14.39407 -14.09912 -13.76765 -13.63255 -13.38438 -13.12559 -13.05191 -12.65715 -12.60970 -12.42012 -12.01321 -11.99607 -11.65226 -11.19258 -11.08370 -11.05063 -10.78921 -10.76544 -9.90355 -9.84182 -9.57372 -9.45771 -9.08717 -8.78472 -8.35227 -8.26995 -6.52632 -6.23914 -3.94693 0.79857 1.16801 2.67056 2.84424 2.88986 3.20926 3.23224 3.28355 3.31655 3.52410 3.70339 4.15668 4.17602 4.38553 4.49661 4.61629 4.75436 4.81706 4.95655 4.99337 5.06970 5.11391 5.13478 5.28700 5.32349 5.39433 5.45847 5.48905 5.57392 5.63082 5.80930 5.82412 6.05299 6.15071 6.37985 6.54321 7.02230 7.29632 7.48452 7.57070 8.10487 8.32453 8.36558 9.21533 10.83418 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003492 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.303465 B = 8016.077180 C = 9276.093228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.127 3.873 3 H 0.084 0.916 4 C 0.107 3.893 5 N -0.624 5.624 6 C 0.079 3.921 7 C 0.540 3.460 8 O -0.517 6.517 9 C -0.151 4.151 10 S -0.055 6.055 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.075 3.925 14 N -0.866 5.866 15 Si 0.918 3.082 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.690 5.690 20 C 0.467 3.533 21 C -0.328 4.328 22 C 0.380 3.620 23 F -0.107 7.107 24 N -0.599 5.599 25 C 0.379 3.621 26 N -0.573 5.573 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.269 0.731 38 H 0.426 0.574 39 H 0.149 0.851 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.501 15.711 -4.514 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.020 3.980 3 H 0.102 0.898 4 C -0.017 4.017 5 N -0.360 5.360 6 C -0.064 4.064 7 C 0.329 3.671 8 O -0.392 6.392 9 C -0.302 4.302 10 S 0.172 5.828 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.134 4.134 14 N -0.501 5.501 15 Si 0.744 3.256 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.326 5.326 20 C 0.222 3.778 21 C -0.358 4.358 22 C 0.221 3.779 23 F -0.086 7.086 24 N -0.325 5.325 25 C 0.089 3.911 26 N -0.297 5.297 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.269 0.731 39 H 0.167 0.833 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -15.244 13.887 -3.204 20.868 hybrid contribution 1.816 1.665 -1.284 2.778 sum -13.428 15.552 -4.488 21.031 Atomic orbital electron populations 1.22251 0.94360 1.03399 1.02747 1.21632 0.94407 0.97322 0.84629 0.89755 1.21775 0.80861 1.02782 0.96254 1.47865 1.05766 1.22176 1.60147 1.21809 0.95989 0.90426 0.98163 1.20399 0.90477 0.80145 0.76101 1.90618 1.64405 1.38815 1.45329 1.23555 0.93269 1.07864 1.05497 1.85389 1.05703 1.17831 1.73902 1.22846 0.91085 1.09804 1.44789 0.91031 1.24972 0.99534 0.94462 0.94462 1.70009 1.35937 1.08605 1.35596 0.86186 0.83118 0.77673 0.78641 1.20231 1.20711 1.19720 1.45106 1.67697 1.14648 1.05124 1.18353 0.85314 0.87156 0.86959 1.21734 1.18347 0.96023 0.99682 1.17990 0.90874 0.79252 0.89747 1.91632 1.89394 1.31126 1.96465 1.67853 1.21150 1.11067 1.32423 1.24607 0.87472 0.84782 0.94197 1.68125 1.21860 1.40280 0.99443 0.90979 0.91845 0.91439 0.88814 0.88685 0.92827 0.90417 0.91129 0.89254 0.89395 0.92146 0.73066 0.83294 0.77600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 9.46 37.16 0.35 -0.81 16 2 C 0.13 1.12 2.58 -67.93 -0.18 0.94 16 3 H 0.08 0.65 6.50 -51.93 -0.34 0.31 16 4 C 0.11 0.97 5.19 -4.04 -0.02 0.95 16 5 N -0.62 -7.42 2.77 -181.58 -0.50 -7.92 16 6 C 0.08 0.70 10.29 59.85 0.62 1.32 16 7 C 0.54 9.26 6.99 -10.98 -0.08 9.18 16 8 O -0.52 -10.40 13.18 5.55 0.07 -10.33 16 9 C -0.15 -2.96 4.71 36.01 0.17 -2.79 16 10 S -0.05 -1.45 20.57 -107.50 -2.21 -3.66 16 11 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 12 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 13 C 0.08 2.13 5.49 -17.43 -0.10 2.03 16 14 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 15 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 N -0.69 -8.91 4.63 -53.80 -0.25 -9.16 16 20 C 0.47 6.44 7.69 -154.77 -1.19 5.25 16 21 C -0.33 -3.85 8.94 -39.04 -0.35 -4.20 16 22 C 0.38 4.93 8.50 -17.05 -0.14 4.78 16 23 F -0.11 -1.31 17.30 2.25 0.04 -1.27 16 24 N -0.60 -8.33 10.44 -14.98 -0.16 -8.48 16 25 C 0.38 5.06 12.28 -92.21 -1.13 3.92 16 26 N -0.57 -8.82 10.47 -13.84 -0.14 -8.96 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.47 7.80 -51.93 -0.41 0.06 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.99 7.42 -51.93 -0.39 0.61 16 31 H 0.09 0.53 7.89 -51.93 -0.41 0.12 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.73 6.44 -51.93 -0.33 0.40 16 34 H 0.07 0.41 7.89 -51.93 -0.41 0.00 16 35 H 0.09 1.61 7.40 -51.91 -0.38 1.23 16 36 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.43 6.77 5.95 -40.82 -0.24 6.53 16 39 H 0.15 1.35 6.33 -52.49 -0.33 1.01 16 40 H 0.21 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -34.68 355.41 -8.74 -43.42 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.90 Total: 4.17 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.75 Total: 5.76 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.32 Total: -59.68 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.07 Total: -10.33 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.68 -8.74 -43.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115629971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.874 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds